EMSegmenter-Tasks:MRI-Human-Brain-Parcellation

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Description

MRI Human Head pipeline for a finer-grained parcellation

Anatomical Tree

Legend:
BG: background
LT: left temporal
RT: right temporal
GM: grey matter
WM: white matter
CSF: cerebrospinal fluid

Tree:

  • Root
    • BG
    • GM
      • LTGM
        • LTGM1
        • LTGM2
        • LTGM3
        • LTGM4
      • RTGM
        • RTGM1
        • RTGM2
        • RTGM3
        • RTGM4
      • SUBGM
    • WM
      • LTWM
        • LTWM1
        • LTWM2
        • LTWM3
        • LTWM4
      • RTWM
        • RTWM1
        • RTWM2
        • RTWM3
        • RTWM4
      • SUBWM
    • CSF

Pre-Processing

Pre procssing includes atlas-to-target registration, image inhomogeneity correction, and automatic mean/covariance calculation.

Result

MRIHumanBrainParcellation.png

Collaborators

Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH)