Difference between revisions of "EMSegmenter-Tasks:MRI-Human-Brain-Parcellation"
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==Anatomical Tree== | ==Anatomical Tree== | ||
| − | + | The anatomical tree represents the structures to be segmented. Node labels displayed below contain a human readable structure name and in parentheses the internally used structure name. | |
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* Root | * Root | ||
| − | ** BG | + | ** background (BG) |
| − | ** GM | + | ** grey matter (GM) |
| − | *** LTGM | + | *** left temporal grey matter (LTGM) |
| − | **** LTGM1 | + | **** left temporal grey matter - region 1 (LTGM1) |
| − | **** LTGM2 | + | **** left temporal grey matter - region 2 (LTGM2) |
| − | **** LTGM3 | + | **** left temporal grey matter - region 3 (LTGM3) |
| − | **** LTGM4 | + | **** left temporal grey matter - region 4 (LTGM4) |
| − | *** RTGM | + | *** right temporal grey matter (RTGM) |
| − | **** RTGM1 | + | **** right temporal grey matter - region 1 (RTGM1) |
| − | **** RTGM2 | + | **** right temporal grey matter - region 2 (RTGM2) |
| − | **** RTGM3 | + | **** right temporal grey matter - region 3 (RTGM3) |
| − | **** RTGM4 | + | **** right temporal grey matter - region 4 (RTGM4) |
| − | *** SUBGM | + | *** '''TODO''' (SUBGM) |
| − | ** WM | + | ** white matter (WM) |
| − | *** LTWM | + | *** left temporal white matter (LTWM) |
| − | **** LTWM1 | + | **** left temporal white matter - region 1 (LTWM1) |
| − | **** LTWM2 | + | **** left temporal white matter - region 2 (LTWM2) |
| − | **** LTWM3 | + | **** left temporal white matter - region 3 (LTWM3) |
| − | **** LTWM4 | + | **** left temporal white matter - region 4 (LTWM4) |
| − | *** RTWM | + | *** right temporal white matter (RTWM) |
| − | **** RTWM1 | + | **** right temporal white matter - region 1 (RTWM1) |
| − | **** RTWM2 | + | **** right temporal white matter - region 2 (RTWM2) |
| − | **** RTWM3 | + | **** right temporal white matter - region 3 (RTWM3) |
| − | **** RTWM4 | + | **** right temporal white matter - region 4 (RTWM4) |
| − | *** SUBWM | + | *** '''TODO''' (SUBWM) |
| − | ** CSF | + | ** cerebrospinal fluid (CSF) |
==Atlas== | ==Atlas== | ||
Revision as of 16:27, 30 November 2010
Home < EMSegmenter-Tasks:MRI-Human-Brain-ParcellationDescription
MRI Human Head pipeline for a finer-grained parcellation
Anatomical Tree
The anatomical tree represents the structures to be segmented. Node labels displayed below contain a human readable structure name and in parentheses the internally used structure name.
- Root
- background (BG)
- grey matter (GM)
- left temporal grey matter (LTGM)
- left temporal grey matter - region 1 (LTGM1)
- left temporal grey matter - region 2 (LTGM2)
- left temporal grey matter - region 3 (LTGM3)
- left temporal grey matter - region 4 (LTGM4)
- right temporal grey matter (RTGM)
- right temporal grey matter - region 1 (RTGM1)
- right temporal grey matter - region 2 (RTGM2)
- right temporal grey matter - region 3 (RTGM3)
- right temporal grey matter - region 4 (RTGM4)
- TODO (SUBGM)
- left temporal grey matter (LTGM)
- white matter (WM)
- left temporal white matter (LTWM)
- left temporal white matter - region 1 (LTWM1)
- left temporal white matter - region 2 (LTWM2)
- left temporal white matter - region 3 (LTWM3)
- left temporal white matter - region 4 (LTWM4)
- right temporal white matter (RTWM)
- right temporal white matter - region 1 (RTWM1)
- right temporal white matter - region 2 (RTWM2)
- right temporal white matter - region 3 (RTWM3)
- right temporal white matter - region 4 (RTWM4)
- TODO (SUBWM)
- left temporal white matter (LTWM)
- cerebrospinal fluid (CSF)
Atlas
Image Dimension = 256 x 256 x 220
Image Spacing = 0.9375 x 0.9375 x 0.9375
Pre-Processing
Pre procssing includes atlas-to-target registration, image inhomogeneity correction, and automatic mean/covariance calculation.
Result
Collaborators
Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH)
