Difference between revisions of "Documentation/Nightly/SlicerApplication/SupportedDataFormat"

From Slicer Wiki
Jump to: navigation, search
(Replaced content with "<noinclude>{{documentation/versioncheck}} </noinclude> {{documentation/banner | text = [https://slicer.readthedocs.io/en/latest/user_guide/supported_data_formats.html Th...")
Tags: 2017 source edit, Replaced
 
(23 intermediate revisions by 8 users not shown)
Line 1: Line 1:
−
<!-- ---------------------------- -->
+
<noinclude>{{documentation/versioncheck}}
−
{{documentation/{{documentation/version}}/slicerapplication-header}}
+
</noinclude>
−
<!-- ---------------------------- -->
 
−
=File formats supported by Slicer {{documentation/version}}=
 
−
{| style="margin: 1em auto 1em auto; border: 1px solid darkgray;"
 
−
|-
 
−
!Format
 
−
!File Name Extensions
 
−
!Read
 
−
!Write
 
−
!Module
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Scenes
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Data|Data]]
 
−
|-
 
−
| MRML (Medical Reality Markup Language File)
 
−
| .mrml
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|MRML file is a xml-formatted text file with scene metadata and pointers to externally stored data files.  [[Documentation/{{documentation/version}}/Developers/MRML|Data Model]]
 
−
|-
 
−
| MRB (Medical Reality Bundle)
 
−
| .mrb, .zip
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes (.mrb extension only)
 
−
|MRB is a binary format encapsulating all scene data (bulk data and metadata).  Internally it uses zip format.  Any .zip file that contains a self-contained data tree including a .mrml file can be opened.
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small>
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]]
 
−
|-
 
−
| [http://medical.nema.org/ DICOM]
 
−
| .dcm ...
 
−
|bgcolor="LightGreen" align="center"|yes<ref>For a number of dMRI formats we recommend use of the [[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|DICOM to NRRD converter]] before loading the data into Slicer.</ref>
 
−
|bgcolor="#f34a33" align="center"|no<ref>Limited support for writing image volumes in DICOM format is provided by the [[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] module</ref>
 
−
|[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]], [[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|DICOMToNRRDConverter]], [[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|CreateDICOMSeries]]
 
−
|-
 
−
| [http://teem.sourceforge.net/nrrd/format.html NRRD]
 
−
| .nrrd, .nhdr
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| [http://www.itk.org/Wiki/MetaIO/Documentation MetaImage]
 
−
| .mhd, .mha
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK]
 
−
| .vtk
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| [http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm Analyze]
 
−
| .hdr, .img, .img.gz
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| [http://nifti.nimh.nih.gov/nifti-1/ NifTI]
 
−
| .nia, .nii, .nii.gz
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| BMP
 
−
| .bmp
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| BioRad
 
−
| .pic
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| Brains2
 
−
| .mask
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| GIPL
 
−
| .gipl .gipl.gz
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| JPEG
 
−
| .jpg, .jpeg
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| LSM
 
−
| .lsm
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| PNG
 
−
| .png
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| Stimulate
 
−
| .spr
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| TIFF
 
−
| .tif, .tiff
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| MGH-NMR
 
−
| .mgz
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Models
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Models|Models]]
 
−
|-
 
−
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK Polygonal Data]
 
−
| .vtk
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| [http://www.vtk.org/VTK/img/file-formats.pdf VTK XML Polygonal Data]
 
−
| .vtp
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| STL
 
−
| .stl
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| OBJ
 
−
| .obj
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="#f34a33" align="center"|no
 
−
|
 
−
|-
 
−
| Others (to be tested)
 
−
|  .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="#f34a33" align="center"|no
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Fiducials
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]]
 
−
|-
 
−
| CSV
 
−
| .fcsv
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| Text
 
−
| .txt
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transforms
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]]
 
−
|-
 
−
| [http://www.itk.org/ItkSoftwareGuide.pdf Transform]
 
−
| .tfm, .mat
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| Text
 
−
| .txt
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transfer Functions
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]]
 
−
|-
 
−
| Volume Rendering properties
 
−
| .vp
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
| Text
 
−
| .txt
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Lookup tables
 
−
! scope="col"| [[Documentation/{{documentation/version}}/Modules/Colors|Colors]]
 
−
|-
 
−
| [[Documentation/{{documentation/version}}/Modules/Colors#File_format|Text]]
 
−
| .txt, .ctbl
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|-
 
−
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Double Arrays
 
−
!
 
−
|-
 
−
| CSV
 
−
| .csv
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|bgcolor="LightGreen" align="center"|yes
 
−
|
 
−
|}
 
  
−
<references/>
+
{{documentation/banner
−
 
+
| text  = [https://slicer.readthedocs.io/en/latest/user_guide/supported_data_formats.html This page has been moved to read-the-docs.]
−
=References=
+
| background-color = 8FBC8F }}
−
* [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats]
 
−
 
 
−
<!-- ---------------------------- -->
 
−
{{documentation/{{documentation/version}}/slicerapplication-footer}}
 
−
<!-- ---------------------------- -->
 

Latest revision as of 16:45, 21 August 2020

Home < Documentation < Nightly < SlicerApplication < SupportedDataFormat


For the latest Slicer documentation, visit the read-the-docs.



This page has been moved to read-the-docs.

Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/Nightly/SlicerApplication/SupportedDataFormat&oldid=63389"