Difference between revisions of "Documentation/Nightly/ScriptRepository"

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{{documentation/banner
=Community-contributed modules=
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| text  = [https://slicer.readthedocs.io/en/latest/developer_guide/script_repository.html This page has been moved to read-the-docs.]
 
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Usage: save the .py file to a directory, add the directory to the additional module paths in the Slicer application settings.
 
 
 
==Segmentation==
 
* [https://subversion.assembla.com/svn/slicerrt/trunk/SlicerRt/sandbox/FillRoiModule/FillRoi.py FillRoi.py]: Fill a region of interest in a labelmap volume with a constant value. This can be used after an automatic segmentation for removing certain regions of a volume.
 
 
 
==Filters==
 
* [https://raw.github.com/pieper/VolumeMasker/master/VolumeMasker.py VolumeMasker.py]: Update a target volume with the results of setting all input volume voxels to 0 except for those that correspond to a selected label value in an input label map (Used for example in the volume rendering in [https://www.youtube.com/watch?v=dfu2gugHLHs this video).
 
 
 
==DICOM==
 
* [https://gist.github.com/pieper/6186477 dicom header browser] to easily scroll through dicom files using dcmdump.
 
 
 
=Community-contributed examples=
 
 
 
Usage: Copy-paste the shown code lines or linked .py file contents into Python console in Slicer.
 
 
 
==Capture==
 
* Get a MRML node in the scene based on the node name and call methods of that object. For the MRHead sample data:
 
  vol=slicer.util.getNode('MR*')
 
  vol.GetImageData().GetDimensions()
 
* Capture the full Slicer screen and save it into a file
 
  img = qt.QPixmap.grabWidget(slicer.util.mainWindow()).toImage()
 
  img.save('c:/tmp/test.png')
 
* [https://subversion.assembla.com/svn/slicerrt/trunk/SlicerRt/sandbox/CaptureRotationVideo/CaptureRotationVideo.py CaptureRotationVideo.py]: Capture a video of the scene rotating in the 3D view
 
 
 
==Launching Slicer==
 
* How to open an .mrb file with Slicer at the command line?
 
  Slicer.exe --python-code "slicer.util.loadScene( 'f:/2013-08-23-Scene.mrb' )"
 
* How to run a script in the Slicer environment in batch mode (without showing any graphical user interface)?
 
  Slicer.exe --python-code "doSomething; doSomethingElse; etc." --testing --no-splash --no-main-window
 

Latest revision as of 04:06, 24 April 2021

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