Documentation/Nightly/Modules/TractographyDICOMSave

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Home < Documentation < Nightly < Modules < TractographyDICOMSave

For the stable Slicer documentation, visit the 4.10 page.

Introduction and Acknowledgements


Title: Tractography DICOM Save
Author(s)/Contributor(s): Isaiah Norton (BWH)
License: 3D Slicer Contribution and Software License Agreement
Acknowledgements: This work is funded by the National Institutes of Health through the National Cancer Institute Information Technology for Cancer Research program, Grant CA199459

Contact: <email>slicer-users@bwh.harvard.edu</email>
Website: http://slicerdmri.github.io/

SlicerDMRI  
Surgical Planning Laboratory  
NAC  

Module Description

Utility for conversion of Slicer-style VTK tractography to DICOM TrackSet.


Use Cases

Most frequently used for these scenarios:

  • Use Case 1: Load DICOM format tractography files into 3D Slicer.

Tutorials

Links to tutorials that use this module

Panels and their use

Parameters:

  • IO: Input/output parameters
    • Fiber Bundle (vtk_fiberbundle): Input FiberBundle/VTK for conversion to DICOM TrackSet
    • Reference DICOM File (reference_dicom): Reference diffusion-weighted DICOM Files to associate with TrackSet.
    • Output Directory (output_directory): Output DICOM TrackSet Directory
    • Output Filename (output_filename): Output DICOM TrackSet File
  • Advanced:
    • RAS to LPS (RAS_to_LPS): Change coordinate system from RAS (Slicer) to LPS (DICOM)
    • Algorithm Family (AlgorithmFamily): Supplement 181: MR Diffusion Tractography Algorithm Family
    • Laterality (Laterality): Track set laterality
    • Algorithm Name (AlgorithmName): Algorithm name
    • Algorithm Version (AlgorithmVersion): Algorithm version


List of parameters generated transforming this XML file using this XSL file. To update the URL of the XML file, edit this page.


Similar Modules

References

Information for Developers