Difference between revisions of "Documentation/Nightly/Modules/SlicerModuleConnectedThreshold"

From Slicer Wiki
Jump to: navigation, search
(Changed logo)
m
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 +
<noinclude>{{documentation/versioncheck}}</noinclude>
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-header}}
 
{{documentation/{{documentation/version}}/module-header}}
Line 7: Line 8:
 
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
Author: Salma Bengali, CARMA Center, University of Utah<br>
+
Author: Umme Salma Bengali, CARMA Center, University of Utah<br>
 
Contributors: Alan Morris, Josh Cates, Rob MacLeod, CARMA Center, University of Utah<br>
 
Contributors: Alan Morris, Josh Cates, Rob MacLeod, CARMA Center, University of Utah<br>
Contacts: Salma Bengali: <email>salma.bengali@carma.utah.edu</email> <br>
+
Contacts: Umme Salma Bengali: <email>salma.bengali@carma.utah.edu</email> <br>
 
{{documentation/{{documentation/version}}/module-introduction-row}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
+
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
[[Image:CMRToolkit_UofU_logo.jpg‎|center|280px]]
+
|{{collaborator|logo|uofu}}|{{collaborator|longname|uofu}}
|}
+
}}
 
{{documentation/{{documentation/version}}/module-introduction-end}}
 
{{documentation/{{documentation/version}}/module-introduction-end}}
  
Line 36: Line 37:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-section|Tutorials}}
 
{{documentation/{{documentation/version}}/module-section|Tutorials}}
[[Media:Carma_Connected_Threshold_Filter_Tutorial.pptx|CARMA Connected Threshold Filter Tutorial]]
+
[[Media:Carma_Connected_Threshold_Filter_Tutorial.pptx|Connected Threshold Filter Tutorial]]
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Latest revision as of 02:44, 12 August 2015

Home < Documentation < Nightly < Modules < SlicerModuleConnectedThreshold


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements

Author: Umme Salma Bengali, CARMA Center, University of Utah
Contributors: Alan Morris, Josh Cates, Rob MacLeod, CARMA Center, University of Utah
Contacts: Umme Salma Bengali: <email>salma.bengali@carma.utah.edu</email>

The University of Utah Health Sciences  

Module Description

This module uses a single seed point to segment an image. The seed point (fiducial) is placed within the region to be segmented. The upper and lower thresholds are entered by the user. The segmented region will contain pixels that are connected to this seed, and lie in between this range. Multiple seed points can be used.

Use Cases

This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images.

Bottom Left:Segmentation overlaid on LGE-MRI image, Center: Segmentation output

Tutorials

Connected Threshold Filter Tutorial

Panels and their use

  • Input image
  • Output image
  • Lower threshold
  • Upper threshold
  • Seed/s: User placed fiducial/s inside the region to be segmented

Similar Modules

N/A

References

N/A

Information for Developers

The source code for this module can be found at the CARMA GitHub repository.