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| − | {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} | + | | text = [https://slicer.readthedocs.io/en/latest/user_guide/modules/markups.html This page has been moved to read-the-docs.] |
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| − | This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
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| − | Author: Nicole Aucoin, SPL, BWH<br>
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| − | Contact: Nicole Aucoin, <email>nicole@bwh.harvard.edu</email><br>
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| − | {{documentation/{{documentation/version}}/module-section|Module Description}}
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| − | This module is used to manage markups in Slicer.
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| − | It is based on the functionality in the Slicer 3.6 Fiducials module, with elements from the Slicer 4.2 Annotations module.
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| − | Currently, only fiducials are supported.
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| − | Development history can be found in the [[documentation/{{documentation/version}}/Modules/{{documentation/modulename}}#References|references]].
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| − | This module allows you to add new markups, edit markups in a list, delete markups and modify display properties of markups. | |
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| − | Markups can be passed to command line modules (CLIs) using the <pre>--point</pre> argument.
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| − | The Mouse mode tool bar can be used to place new markups by positioning the mouse and right clicking in the viewers.
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| − | N/A
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| − | {{documentation/{{documentation/version}}/module-section|Similar Modules}}
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| − | *[[Documentation/Nightly/Modules/Annotations | Annotations]] module is similar, and will be deprecated as the functionality is moved to the Markups module.
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| − | {{documentation/{{documentation/version}}/module-section|References}}
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| − | *[http://wiki.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:MarkupsModuleSummer2013 Summer 2013 Project Week project page]
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| − | *[http://wiki.na-mic.org/Wiki/index.php/2013_Project_Week:MarkupsModule Winter 2013 Project Week project page]
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| − | *[http://wiki.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:AnnotationModule Summer 2012 Project Week project page]
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| − | {{documentation/{{documentation/version}}/module-section|Information for Developers}}
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| − | == Python ==
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| − | Markups fiducials can be added to the currently active list from the python console by using the following module logic command:
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| − | slicer.modules.markups.logic().AddFiducial()
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| − | The command with no arguments will place a new fiducial at the origin. You can also pass it an initial location:
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| − | slicer.modules.markups.logic().AddFiducial(1.0, -2.0, 3.3)
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| − | Each vtkMRMLMarkupsFiducialNode has a vector of points in it which can be accessed from python:
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| − | fidNode = getNode("vtkMRMLMarkupsFiducialNode1")
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| − | n = fidNode.AddFiducial(4.0, 5.5, -6.0)
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| − | fidNode.SetNthFiducialLabel(n, "new label")
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| − | # each markup is given a unique id which can be accessed from the superclass level
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| − | id1 = fidNode.GetNthMarkupID()
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