Difference between revisions of "Documentation/Nightly/Modules/LineMarkerRegistration"

From Slicer Wiki
Jump to: navigation, search
Line 44: Line 44:
  
 
[[Image:LineMarkerRegistration_Screenshot_LoadData.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_LoadData.png|400px]]
 +
 +
You will see the model and the image in the 2D/3D viewer.
 
[[Image:LineMarkerRegistration_Screenshot_VisualizeData.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_VisualizeData.png|400px]]
 +
 +
From the Modules menu, go to "IGT" > "LineMarkerRegistration. The panel of the CLI looks:
 +
 
[[Image:LineMarkerRegistration_Screenshot_GUI.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_GUI.png|400px]]
 +
 +
 
[[Image:LineMarkerRegistration_Screenshot_LoadCSV.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_LoadCSV.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_Segmented.png|400px]]
 
[[Image:LineMarkerRegistration_Screenshot_Segmented.png|400px]]

Revision as of 16:01, 9 January 2013

Home < Documentation < Nightly < Modules < LineMarkerRegistration

Introduction and Acknowledgements

This work is part of the National Center for Image Guided Therapy (NCIGT) (P41 EB015898), National Alliance for Medical Image Computing (NA-MIC) (U54 EB005149), and other research grants (R01 CA111288, R01 CA138586) funded by National Institutes of Health and CIMIT.
Author: Junichi Tokuda, BWH
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>

Surgical Planning Laboratory (SPL)  

Module Description

The Line Marker Registration CLI automatically detects a fiducial marker consisting of multiple lines on a 3D image and register the marker to the image coordinate system. The users can configure the CLI to use their own fiducial marker design by creating a marker configuration file formatted in CSV.

Use Cases

N/A

Tutorials

Installation

Currently this CLI is not available in Slicer Extension. Please obtain the source code from Git repository and build it by following the instruction.

Example Data

Example fiducial marker data (MR-visible z-frame) comes with the source code. There are three files in the "Examples" directory:

  • zframe-config.csv (Example fiducial marker configuration file)
  • zframe-image.nrrd (MR image of example fiducial marker)
  • zframe-model.vtk (VTK model of fiducial marker)

Step by step instruction

First, load the MR image and the VTK model to the Scene.

LineMarkerRegistration Screenshot LoadData.png

You will see the model and the image in the 2D/3D viewer. LineMarkerRegistration Screenshot VisualizeData.png

From the Modules menu, go to "IGT" > "LineMarkerRegistration. The panel of the CLI looks:

LineMarkerRegistration Screenshot GUI.png


LineMarkerRegistration Screenshot LoadCSV.png LineMarkerRegistration Screenshot Segmented.png LineMarkerRegistration Screenshot DataModule.png LineMarkerRegistration Screenshot ApplyTransform.png LineMarkerRegistration Screenshot Confirmation.png


Panels and their use

N/A

Similar Modules

N/A

References

N/A

Information for Developers