Documentation/Nightly/Modules/FiberTractMeasurements

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Introduction and Acknowledgements

This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the NA-MIC website. Author: Alex Yarmarkovich, Fan Zhang, Lauren O'Donnell, SPL, LMI, PNL, Brigham and Women's Hospital, Harvard Medical School Contributor: Alex Yarmarkovich, Fan Zhang, Lauren O'Donnell Contact: Lauren O'Donnell <email> odonnell@bwh.harvard.edu </email>

Surgical Planning Laboratory   NAC

Module Description

Compute whole-fiber scalar measurements from a directory of VTK fiber bundle files. Files must have tensors stored in as cell data Slicer tensor convention.

Use Cases

• Use Case 1:

Tutorials

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Panels and their use

Parameters:

• IO: Input/output parameters
  • Select Input Type (inputType): Type of input: MRML Hierarchy, or directory containing VTK polydata files.
  • Fibers Hierarchy (FiberHierarchyNode): Fibers top hierarchy node
  • Fibers File Folder (InputDirectory): Directory from which to read fibers
  • Output Text File (outputFile): Output measurement file
  • Select Output Format (outputFormat): Output format: print statistics along column vs. row.
  • Output Field Separator (outputSeparator): Output file field separator (Comma, Space, or Tab).
  • Print statistics for all clusters and children. (printAllStatistics): Print statistics for all clusters and children. In hierarchy mode, by default this module only prints statistics for specified cluster(s).
• Advanced Settings: Advanced settings
  • Output more statistics (moreStatistics): Output additional statistics, including maximum, minimum, median, variance.

List of parameters generated transforming this XML file using this XSL file. To update the URL of the XML file, edit this page.

Similar Modules

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References

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