Difference between revisions of "Documentation/Nightly/Modules/DistanceMapBasedRegistration"
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|This module was originally developed to enable registration between segmented MRI and transrectal ultrasound (TRUS) images of the prostate. The registration approach is based on hierarchical deformable registration of the smoothed distance maps of the segmentation masks (see details in the publication provided in the references section), and thus is not modality- or organ-specific, and can be applied in other applications. | |This module was originally developed to enable registration between segmented MRI and transrectal ultrasound (TRUS) images of the prostate. The registration approach is based on hierarchical deformable registration of the smoothed distance maps of the segmentation masks (see details in the publication provided in the references section), and thus is not modality- or organ-specific, and can be applied in other applications. | ||
− | | [[File: | + | | [[File:DistanceMapBasedRegistration_GUI.png|thumb|400px| Module control panel.]] |
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{{documentation/{{documentation/version}}/module-section|Tutorials}} | {{documentation/{{documentation/version}}/module-section|Tutorials}} | ||
None at this time ... stay tuned! | None at this time ... stay tuned! | ||
+ | |||
+ | The module is also intended to be used for conducting registration in batch mode. Instructions to be developed. | ||
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{{documentation/{{documentation/version}}/module-section|Panels and their use}} | {{documentation/{{documentation/version}}/module-section|Panels and their use}} | ||
+ | {| | ||
+ | | | ||
+ | *'''Fixed image''' (optional): image that should be used as reference in registration | ||
+ | *'''Segmentation of the fixed image''' | ||
+ | *'''Moving image''' (optional): image to be registered | ||
+ | *'''Segmentation of the moving image''' | ||
+ | *'''Registration affine transform''': transform to store the result of affine registration | ||
+ | *'''Registration deformable transform''': transform to store the result of deformable registration | ||
+ | *'''Visualization''': initializes slice viewers to show overlay of the fixed and moving images (before or after registration), outline of the fixed image segmentation and the registration transform grid and visualization of the fixed and moving segmentation label surfaces in 3d view | ||
+ | | | ||
See module description | See module description | ||
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Revision as of 20:09, 17 April 2015
Home < Documentation < Nightly < Modules < DistanceMapBasedRegistration
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
This module is part of the SlicerProstate extension. Acknowledgments: This work is/was supported in part the National Institutes of Health, National Cancer Institute through the following grants:
Authors: Andrey Fedorov (SPL), Andras Lasso (Queen's University) License: Slicer License
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Module Description
This module was originally developed to enable registration between segmented MRI and transrectal ultrasound (TRUS) images of the prostate. The registration approach is based on hierarchical deformable registration of the smoothed distance maps of the segmentation masks (see details in the publication provided in the references section), and thus is not modality- or organ-specific, and can be applied in other applications. |
Use Cases
- MRI-ultrasound fusion biopsy of the prostate (primary)
- therapy planning
- treatment response assessment
Tutorials
None at this time ... stay tuned!
The module is also intended to be used for conducting registration in batch mode. Instructions to be developed.
Panels and their use
|
See module description Similar ModulesAdd registration modules here References[1] Fedorov A, Khallaghi S, Antonio Sánchez C, Lasso A, Fels S, Tuncali K, Neubauer Sugar E, Kapur T, Zhang C, Wells W, Nguyen PL, Abolmaesumi P, Tempany C. (2015) Open-source image registration for MRI–TRUS fusion-guided prostate interventions. Int J CARS: 1–10. Available: http://link.springer.com/article/10.1007/s11548-015-1180-7. [2] Fedorov A, Nguyen PL, Tuncali K, Tempany C. (2015). Annotated MRI and ultrasound volume images of the prostate. Zenodo. http://doi.org/10.5281/zenodo.16396 Information for Developers
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