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| − | {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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| − | {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
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| − | This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
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| − | Author: Franklin King (PerkLab, Queen's University)<br>
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| − | Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br>
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| − | Contact: Franklin King, <email>franklin.king@queensu.ca</email><br>
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| − | {{documentation/{{documentation/version}}/module-section|Module Description}}
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| − | The {{documentation/modulename}} module visualizes deformation fields using various visualization options.
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| − | {{documentation/{{documentation/version}}/module-section|Use Cases}}
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| − | Visualize deformation fields
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| − | {|align="center"
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| − | |[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Deformation Field Visualizer module UI with glyph visualization mode active]]
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| − | |[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Deformation Field Visualizer modes]]
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| − | |}
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| − | {{documentation/{{documentation/version}}/module-section|Panels and their use}}
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| − | * IO
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| − | ** Input
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| − | *** Deformation: The deformation field which will be visualized. The deformation field can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.
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| − | *** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.
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| − | ** Output
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| − | *** Output Model: A model to be selected or created that will contain the output.
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| − | * Visualization Mode
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| − | ** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude
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| − | ** Grid: Generates a cube grid that is warped by the deformation field
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| − | ** Block: Generates a rectangular model that is then warped by the deformation field
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| − | ** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field
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| − | ** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude
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| − | ** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field
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| − | * Parameters
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| − | ** Glyph Options
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| − | *** Number of Glyphs: Number of randomly placed glyphs to create
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| − | *** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph
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| − | *** Scaling
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| − | **** Scale Factor: Multiplier for size of glyph relative to vector magnitude
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| − | **** Directional Scaling: Scale glyph only along the vector direction
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| − | **** Isotropic Scaling: Scale glyph in all directions
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| − | *** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options
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| − | *** Random Seed: Seed used for random placement of glyphs
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| − | ** Grid Options
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| − | *** Scale Factor: Multiplier for the scale of the deformation
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| − | *** Spacing: Line spacing used to generate a cube grid
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| − | ** Block Options
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| − | *** Scale Factor: Multiplier for the scale of the deformation
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| − | ** Contour Options
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| − | *** Number of Contours: Number of contours to generate between the specified range values
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| − | *** Range: Range to create contours within
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| − | *** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)
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| − | ** Glyph Slice Options
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| − | *** Slice: Slice view to orient and project the glyphs to
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| − | *** Number of Glyphs: Number of randomly placed glyphs to create in total
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| − | *** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph
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| − | *** Scale Factor: Multiplier for size of glyph relative to vector magnitude
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| − | *** Random Seed: Seed used for random placement of glyphs
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| − | ** Grid Slice Options
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| − | *** Slice: Slice view to orient and project the glyphs to
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| − | *** Scale Factor: Multiplier for size of glyph relative to vector magnitude
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| − | *** Spacing: Line spacing used to generate a square grid
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