Difference between revisions of "Documentation/Nightly/Modules/Calculator"

From Slicer Wiki
Jump to: navigation, search
(Created page with "<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- --------------------...")
 
 
(7 intermediate revisions by the same user not shown)
Line 8: Line 8:
 
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
−
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
+
 
−
Author: FIRSTNAME LASTNAME, AFFILIATION<br>
+
<br>
−
Contributor1: FIRSTNAME LASTNAME, AFFILIATION<br>
+
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer
−
Contributor2: FIRSTNAME LASTNAME, AFFILIATION<br>
+
 
−
Contact: FIRSTNAME LASTNAME, <email>john@doe.org</email><br>
+
Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email><br>
 +
 
 +
'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]
 +
 
 
{{documentation/{{documentation/version}}/module-introduction-row}}
 
{{documentation/{{documentation/version}}/module-introduction-row}}
−
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
 
−
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
 
−
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}  <-Replace this logo with yours
 
−
}}
 
 
{{documentation/{{documentation/version}}/module-introduction-end}}
 
{{documentation/{{documentation/version}}/module-introduction-end}}
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-section|Module Description}}
 
{{documentation/{{documentation/version}}/module-section|Module Description}}
−
N/A
 
 
<!--
 
<!--
 
Here comes a description what the module is good for. Explain briefly how it works and point to the [[documentation/{{documentation/version}}/Modules/{{documentation/modulename}}#References|references]] giving more details on the algorithm.
 
Here comes a description what the module is good for. Explain briefly how it works and point to the [[documentation/{{documentation/version}}/Modules/{{documentation/modulename}}#References|references]] giving more details on the algorithm.
−
 
−
If you are documenting a CLI, the description should be extracted from the corresponding XML description. This could be done automatically using the following wiki template:<pre>{{documentation/{{documentation/version}}/module-description}}
 
  
 
{{documentation/{{documentation/version}}/module-description}}
 
{{documentation/{{documentation/version}}/module-description}}
 
-->
 
-->
 +
{|
 +
|[[File:calculator.png|thumb|left]]
 +
|“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
 +
|}
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
Line 37: Line 37:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-section|Tutorials}}
 
{{documentation/{{documentation/version}}/module-section|Tutorials}}
−
N/A
+
 
 +
Below, we describe the Instructions Guide to use Calculator:
 +
 
 +
# Open 3DSlicer and download “Calculator” using the “Extension Manager”
 +
# Import DICOM data from a CT-scan (better with non-enhanced series)
 +
# Open “Crop Volume” module
 +
#* “Create a new annotation ROI” (Region Of Interest)
 +
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
 +
#* Create a new volume (name will be: “name cropped”)
 +
#* Click “Apply” button
 +
# Open “Calculator” module:
 +
#* Select volume: “name cropped”
 +
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
 +
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
 +
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
 +
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
 +
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
 +
 
 +
{|
 +
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
 +
|}
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Latest revision as of 16:51, 7 November 2019

Home < Documentation < Nightly < Modules < Calculator


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements


Authors: Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email>

License: Slicer License

Module Description

Calculator.png
“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.

Use Cases

N/A

Tutorials

Below, we describe the Instructions Guide to use Calculator:

  1. Open 3DSlicer and download “Calculator” using the “Extension Manager”
  2. Import DICOM data from a CT-scan (better with non-enhanced series)
  3. Open “Crop Volume” module
    • “Create a new annotation ROI” (Region Of Interest)
    • Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
    • Create a new volume (name will be: “name cropped”)
    • Click “Apply” button
  4. Open “Calculator” module:
    • Select volume: “name cropped”
    • Choose threshold (houndfields units) minimum and maximun to fit to the stone
    • If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
    • Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
    • Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
    • Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
Screenshot

Panels and their use

N/A

Similar Modules

N/A

References

N/A

Information for Developers

Work in progress
 Section under construction.


Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/Calculator&oldid=61531"