Revision as of 21:08, 18 April 2017

Home < Documentation < Nightly < ModuleExtensionListing

Modules by category

46 categories:

Astronomy
Cardiac
Cardiac MRI Toolkit
Chest Imaging Platform
- Toolkit
CIP
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
- Segment Editor Extensions
- Utils
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Import and Export
- Process
- Quantify
- Tractography
  - Region-based
- Utilities
Editor Effects
Editor Effect
Endoscopy
Examples
Exporter
Filter
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
- Converters
Legacy
- Converters
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Libraries
Machine Learning
Margin Calculator
Mesh Generation
Mesh Generation
Microscopy
Multi Volume Support
Pathology
Perk Tutor
Plastimatch
- Registration
- Utilities
Quantification
- Change Quantification
Radiology
Radiotherapy
Registration
- CMF Registration
  - Voxelbase Registration
- Label Registration
- Specialized
Segmentation
- Specialized
Sequences
Slicelets
Slicer Prostate
Surface Models
Test Cases
Testing
- IGT Tests
- Slicer RT Tests
- Test Cases
Ultrasound
Uncategorized
Utilities
- BRAINS
Vascular Modeling Toolkit
Web System Tools
Wizards
XNATSlicer

Astronomy

Astro Volume (loadable, bundled in Slicer Astro extension)
Astro Smoothing (loadable, bundled in Slicer Astro extension)
Astro Sample Data (scripted, bundled in Slicer Astro extension)
Astro Modeling (loadable, bundled in Slicer Astro extension)
Astro Welcome (loadable, bundled in Slicer Astro extension)
Slicer Astro Data Probe (scripted, bundled in Slicer Astro extension)

Cardiac

Philips4d Us Dicom Patcher (scripted, bundled in Slicer Heart extension)
Valve View (scripted, bundled in Slicer Heart extension)

Cardiac MRI Toolkit

CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)

Chest Imaging Platform

CIP MIPViewer (scripted, bundled in Chest Imaging Platform extension)
CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
CIP Trachea Stent Planning (scripted, bundled in Chest Imaging Platform extension)
CIP Lesion Model (scripted, bundled in Chest Imaging Platform extension)
Airway Inspector (loadable, bundled in Chest Imaging Platform extension)
CIP PAARatio (scripted, bundled in Chest Imaging Platform extension)
CIP Calcium Scoring (scripted, bundled in Chest Imaging Platform extension)
CIP Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
CIP Parenchyma Subtype Training (scripted, bundled in Chest Imaging Platform extension)
CIP Points Labelling (scripted, bundled in Chest Imaging Platform extension)

Toolkit

CIP

CIP (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)

Converters

Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
Crop Volume (loadable, built-in)
Orient Scalar Volume (cli, built-in)
Convert VTK (cli, bundled in UKFTractography extension)
Vector To Scalar Volume (scripted, built-in)
Create DICOMSeries (cli, built-in)
Particles Display (loadable, bundled in Chest Imaging Platform extension)
Region Type (loadable, bundled in Chest Imaging Platform extension)

Developer Tools

Cameras (loadable, built-in)
Execution Model Tour (cli, built-in)
Node Modified Statistics (scripted, bundled in Debugging Tools extension)
Py Dev Remote Debug (scripted, bundled in Debugging Tools extension)
Extension Wizard (scripted, built-in)
Node Info (scripted, bundled in Debugging Tools extension)
Image Maker (cli, bundled in Image Maker extension)
Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
Event Broker
Double Arrays (loadable, built-in)

DICOM Plugins

DICOMParametric Map Plugin
Dicom Ultrasound Plugin
DICOMSegmentation Plugin
DICOMSlicer Data Bundle Plugin
DICOMTID1500Plugin
DICOMPETSUVPlugin
DICOMScalar Volume Plugin
DICOMDiffusion Volume Plugin
DICOMLongitudinal PETCTPlugin
Dicom Sro Import Plugin
DICOMRWVMPlugin
Dicom Rt Import Export Plugin
Multi Volume Importer Plugin

Editor Extensions

Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Quick TCGAEffect (scripted, bundled in Slicer Pathology extension)
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Binary Watershed Effect (scripted, bundled in IASEM extension)
Double Threshold Effect (scripted, bundled in IASEM extension)
Short Cut Effect (scripted, bundled in Slicer Pathology extension)

Matlab

Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Matlab Commander (cli, bundled in Matlab Bridge extension)

Segment Editor Extensions

Segment Editor PETTumor (scripted, bundled in PETTumor Segmentation extension)

Utils

Slicer Prostate (scripted, bundled in Slicer Prostate extension)

Diffusion

DMRIInstall (scripted, built-in)

Diffusion Data Conversion

DWIConvert (cli, built-in)

Diffusion Tensor Images

Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)

Diffusion Weighted Images

BRAINSDWICleanup (cli, built-in)

Import and Export

DWIConvert (cli, built-in)
DICOMTract to VTK (cli, bundled in Slicer DMRI extension)
VTK to DICOMTract (cli, bundled in Slicer DMRI extension)

Process

Diffusion Weighted Volume Masking (cli, bundled in Slicer DMRI extension)
DWITo DTIEstimation (cli, bundled in Slicer DMRI extension)

Quantify

Diffusion Tensor Scalar Measurements (cli, bundled in Slicer DMRI extension)
Fiber Tract Measurements (cli, bundled in Slicer DMRI extension)

Tractography

Tractography Interactive Seeding (loadable, bundled in Slicer DMRI extension)
Tractography Display (loadable, bundled in Slicer DMRI extension)
UKFTractography (cli, bundled in UKFTractography extension)

Region-based

Tractography Label Map Seeding (cli, bundled in Slicer DMRI extension)
Fiber Bundle Label Select (cli, bundled in Slicer DMRI extension)

Utilities

BRAINSDWICleanup (cli, built-in)
Resample DTIVolume (cli, built-in)
Fiber Bundle To Label Map (scripted, bundled in Slicer DMRI extension)
Resample Scalar Vector DWIVolume (cli, built-in)
DICOM2Full Brain Tractography (scripted, bundled in Slicer DMRI extension)

Editor Effects

Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

Endoscopy (scripted, built-in)

Examples

Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Quick TCGA (loadable, bundled in Slicer Pathology extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Short Cut Core (loadable, bundled in Slicer Pathology extension)
Graph Cut Interactive Segmenter (loadable, bundled in Graph Cut Segment extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Filter

Island Removal (cli, built-in)

Filtering

Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
N4ITKBias Field Correction (cli, built-in)
Image Label Combine (cli, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Checker Board Filter (cli, built-in)
Astro Smoothing (loadable, bundled in Slicer Astro extension)
Extract Skeleton (cli, built-in)
Simple Filters (scripted, built-in)
Threshold Scalar Volume (cli, built-in)
Histogram Matching (cli, built-in)

Arithmetic

Multiply Scalar Volumes (cli, built-in)
Add Scalar Volumes (cli, built-in)
Mask Scalar Volume (cli, built-in)
Subtract Scalar Volumes (cli, built-in)
Cast Scalar Volume (cli, built-in)
Blend Vector Volumes (cli, bundled in Open CVExample extension)

Denoising

Curvature Anisotropic Diffusion (cli, built-in)
Gradient Anisotropic Diffusion (cli, built-in)
Median Image Filter (cli, built-in)
Gaussian Blur Image Filter (cli, built-in)

Morphology

Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)

IGT

Viewpoint (scripted, bundled in Slicer IGT extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Plus Model Catalog Browser (scripted, bundled in Slicer IGT extension)
Create Models (loadable, bundled in Slicer IGT extension)
Needle Finder (scripted, bundled in Needle Finder extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Breach Warning (loadable, bundled in Slicer IGT extension)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Model Registration (scripted, bundled in Slicer IGT extension)
Resection Volume (scripted, bundled in Resection Planner extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Open IGTLink IF (loadable, built-in)
Markups To Model (loadable, bundled in Slicer IGT extension)
i Gyne (scripted, bundled in i Gyne extension)
Plus Remote (scripted, bundled in Slicer IGT extension)

Informatics

tid1500writer (cli, bundled in DCMQI extension)
mp Review Preprocessor (scripted, bundled in mp Review extension)
SEG2NRRD (cli)
TCIABrowser (scripted, bundled in TCIABrowser extension)
segimage2itkimage (cli, bundled in DCMQI extension)
mp Review (scripted, bundled in mp Review extension)
Tables (loadable, built-in)
Data (loadable, built-in)
Dump SEGFrame (cli)
tid1500reader (cli, bundled in DCMQI extension)
Terminologies (loadable, built-in)
Units (loadable, built-in)
DICOM (scripted, built-in)
Sample Data (scripted, built-in)
Colors (loadable, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Annotations (loadable, built-in)
Markups (loadable, built-in)
Subject Hierarchy (loadable, built-in)
Quantitative Reporting (scripted, bundled in Quantitative Reporting extension)

Converters

itkimage2paramap (cli, bundled in DCMQI extension)
paramap2itkimage (cli, bundled in DCMQI extension)
itkimage2segimage (cli, bundled in DCMQI extension)
Encode SEG (cli)

Legacy

Converters

BSpline To Deformation Field (cli, built-in)

Filtering

Otsu Threshold Image Filter (cli, built-in)
Resample Scalar Volume (cli, built-in)

Registration

Test Grid Transform Registration (cli, built-in)
Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test (cli, built-in)

Libraries

Open CV (loadable, bundled in Slicer Open CV extension)

Machine Learning

Deep Infer (scripted, bundled in Deep Infer extension)

Margin Calculator

Margin Calculator (scripted, bundled in Margin Calculator extension)
Dose Morphology (loadable, bundled in Margin Calculator extension)
Synthetic RTDose (scripted, bundled in Margin Calculator extension)

Mesh Generation

Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

IASEMImport Series (cli, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)
Bin Shrink (cli, bundled in IASEM extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

MultiVolume Support

Multi Volume Importer (scripted, built-in)
Multi Volume Explorer (loadable, built-in)

Pathology

Slicer Pathology (scripted, bundled in Slicer Pathology extension)

Perk Tutor

Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Plastimatch

Dicom Sro Export (scripted, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)

Registration

plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
PETLiver Uptake Measurement (cli, bundled in PETLiver Uptake Measurement extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
Q3DC (scripted, bundled in Q3DC extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
Shape Quantifier (scripted, bundled in Shape Quantifier extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
PETStandard Uptake Value Computation (cli, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Segment Statistics (scripted, built-in)
Label Statistics (scripted, built-in)
Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
DWModeling (cli, bundled in Slicer Prostate extension)
BRAINSLabel Stats (cli, built-in)
Pk Modeling (cli, bundled in Pk Modeling extension)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Data Probe (scripted, built-in)
Model To Model Distance (cli, bundled in Model To Model Distance extension)
T1Mapping (cli, bundled in T1Mapping extension)
Slicer Astro Data Probe (scripted, bundled in Slicer Astro extension)
Angle Planes (scripted, bundled in Shape Quantifier extension)
d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
Quantitative Reporting (scripted, bundled in Quantitative Reporting extension)
Dice Computation (loadable, bundled in Dice Computation extension)

ChangeQuantification

Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiology

Slice Tracker (scripted, bundled in Slice Tracker extension)
Slice Tracker Registration (scripted, bundled in Slice Tracker extension)
Slice Tracker ZFrame Registration (scripted, bundled in Slice Tracker extension)

Radiotherapy

Beams (loadable, bundled in Slicer RT extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
External Beam Planning (loadable, bundled in Slicer RT extension)
Segment Comparison (loadable, bundled in Slicer RT extension)
Planar Image (loadable, bundled in Slicer RT extension)
Isodose (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Segment Morphology (loadable, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)

Registration

Transforms (loadable, built-in)
BRAINSResize (cli, built-in)
Perform Metric Test (cli, built-in)
Landmark Registration (scripted, built-in)
PBNRR (cli, bundled in PBNRR extension)
BRAINSResample (cli, built-in)
BRAINSFit (cli, built-in)

CMF Registration

Apply Matrix (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Surface Registration (scripted, bundled in CMFreg extension)

Voxelbase Registration

Non Growing (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)

Label Registration

Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)

Specialized

ACPCTransform (cli, built-in)
Fiducial Registration (cli, built-in)
BRAINSDemon Warp (cli, built-in)
Reformat (loadable, built-in)
Scattered Transform (cli, bundled in Scattered Transform extension)
VBRAINSDemon Warp (cli, built-in)

Segmentation

ROBEXBrain Extraction (cli, bundled in ROBEXBrain Extraction extension)
EMSegment Quick (loadable, built-in)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
ABC (cli, bundled in ABC extension)
Volume Clip To Label (scripted, bundled in Slice Tracker extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segment Editor (scripted, built-in)
Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Skull Stripper (cli, bundled in Skull Stripper extension)
Segment Editor Fast Marching (scripted, bundled in Segment Editor Extra Effects extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Segment CAD (scripted, bundled in Open CAD extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Segment Editor Flood Filling (scripted, bundled in Segment Editor Extra Effects extension)
Wasp (scripted, bundled in Wasp extension)
Editor (scripted, built-in)
Simple Region Growing Segmentation (cli, built-in)
EMSegment (loadable, built-in)
Quantitative Reporting (scripted, bundled in Quantitative Reporting extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Segment Editor Watershed (scripted, bundled in Segment Editor Extra Effects extension)

Specialized

BRAINSROIAuto (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
EMSegment Command Line (cli, built-in)

Sequences

Sequences (loadable, bundled in Sequences extension)
Sequence Browser (loadable, bundled in Sequences extension)
Metafile Importer (loadable, bundled in Sequences extension)

Slicelets

Film Dosimetry Analysis (scripted, bundled in Film Dosimetry Analysis extension)
Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

SlicerProstate

ZFrame Calibration (cli, bundled in Slice Tracker extension)

Surface Models

Surface Toolbox (scripted, built-in)
Grayscale Model Maker (cli, built-in)
Model Maker (cli, built-in)
Model To Label Map (cli, built-in)
Merge Models (cli, built-in)
Easy Clip (scripted, bundled in Easy Clip extension)
Label Map Smoothing (cli, built-in)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Probe Volume With Model (cli, built-in)
Texture Model (scripted, bundled in Slicer IGT extension)

TestCases

SEGExporter Self Test

Testing

CLI4Test
Threshold Threading Test
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Slicer MRBSave Restore Check Paths Test
CLIROITest (cli, built-in)
Performance Tests
Slicer MRBMultiple Save Restore Test
Slicer MRBTest
SEGExporter Self Test
Self Tests
Slicer MRBMultiple Save Restore Loop Test

IGT Tests

Breach Warning Self Test
Watchdog Self Test

SlicerRT Tests

IGRTWorkflow Self Test
Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)

TestCases

Atlas Tests
Add Storable Data After Scene View Test
test tractography display
Slicer Transform Interaction Test1
RSNAQuant Tutorial
Neurosurgical Planning Tutorial Markups Self Test
Change Tracker Self Test
Fiducial Layout Switch Bug1914
Graph Cut Segment Self Test
Slicer Bounds Test
Util Test
Charting (scripted, built-in)
Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
fiber visibility crash2438
RSNAVis Tutorial
JRC2013Vis
Add Many Markups Fiducial Test
Crop Volume Self Test
Slice Link Logic (scripted, built-in)
Volume Rendering Scene Close (scripted, built-in)
slicer Close Crash Bug2590
CLIEvent Test
Nsg Plan Tracto (scripted, bundled in Slicer DMRI extension)
Markups Widgets Self Test
Tables Self Test
Slicer Orientation Selector Test
Markups In Views Self Test
Two CLIs In Parallel Test
Subject Hierarchy Core Plugins Self Test
Subject Hierarchy Generic Self Test
Scene Performance (scripted, built-in)
Markups In Compare Viewers Self Test
scene Import2428
RSNA2012Prostate Demo
DTINot Reproducible Issue3977
Two CLIs In ARow Test
Colors Scalar Bar Self Test
BRAINSFit Rigid Registration Crash Issue4139
Slicer4Minute (scripted, built-in)
View Controllers Slice Interpolation Bug1926

Ultrasound

Scan Convert Curvilinear Array (cli, bundled in Slicer ITKUltrasound extension)
Scan Convert Phased Array3D (cli, bundled in Slicer ITKUltrasound extension)
Scan Convert Slice Series (cli, bundled in Slicer ITKUltrasound extension)

Uncategorized

Shape Quantifier Core (scripted, bundled in Shape Quantifier extension)
Database Interactor Lib (scripted, bundled in Database Interactor extension)

Utilities

Screen Capture (scripted, built-in)
Data Store (loadable, built-in)
DICOMPatcher (scripted, built-in)
BRAINSStrip Rotation (cli, built-in)
EMSegment Transform To New Format (cli, built-in)

BRAINS

BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Centerline Computation (scripted, bundled in VMTK extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Vesselness Filtering (scripted, bundled in VMTK extension)

Web System Tools

Database Interactor (scripted, bundled in Database Interactor extension)

Wizards

Compare Volumes (scripted, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)

XNATSlicer

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by name

367 modules:

ABC (cli, bundled in ABC extension)
ACPCTransform (cli, built-in)
Add Scalar Volumes (cli, built-in)
Airway Inspector (loadable, bundled in Chest Imaging Platform extension)
Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Angle Planes (scripted, bundled in Shape Quantifier extension)
Annotations (loadable, built-in)
Apply Matrix (cli, bundled in CMFreg extension)
Astro Modeling (loadable, bundled in Slicer Astro extension)
Astro Sample Data (scripted, bundled in Slicer Astro extension)
Astro Smoothing (loadable, bundled in Slicer Astro extension)
Astro Volume (loadable, bundled in Slicer Astro extension)
Astro Welcome (loadable, bundled in Slicer Astro extension)
Beams (loadable, bundled in Slicer RT extension)
Bin Shrink (cli, bundled in IASEM extension)
Blend Vector Volumes (cli, bundled in Open CVExample extension)
Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BRAINSDemon Warp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabel Stats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSStrip Rotation (cli, built-in)
BRAINSTransform Convert (cli, built-in)
Breach Warning (loadable, bundled in Slicer IGT extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)
Cast Scalar Volume (cli, built-in)
Centerline Computation (scripted, bundled in VMTK extension)
Change Tracker (scripted, bundled in Change Tracker extension)
Checker Board Filter (cli, built-in)
CIP (scripted, bundled in Chest Imaging Platform extension)
CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Calcium Scoring (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)
CIP Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
CIP Lesion Model (scripted, bundled in Chest Imaging Platform extension)
CIP MIPViewer (scripted, bundled in Chest Imaging Platform extension)
CIP PAARatio (scripted, bundled in Chest Imaging Platform extension)
CIP Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
CIP Parenchyma Subtype Training (scripted, bundled in Chest Imaging Platform extension)
CIP Points Labelling (scripted, bundled in Chest Imaging Platform extension)
CIP Trachea Stent Planning (scripted, bundled in Chest Imaging Platform extension)
Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
Cleaver CLI (cli, bundled in Cleaver Extension extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Colors (loadable, built-in)
Compare Volumes (scripted, built-in)
Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
Convert Dicom (cli, bundled in Chest Imaging Platform extension)
Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Convert VTK (cli, bundled in UKFTractography extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Create DICOMSeries (cli, built-in)
Create Models (loadable, bundled in Slicer IGT extension)
Crop Lung (cli, bundled in Chest Imaging Platform extension)
Crop Volume (loadable, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Data (loadable, built-in)
Database Interactor (scripted, bundled in Database Interactor extension)
Database Interactor Lib (scripted, bundled in Database Interactor extension)
Data Probe (scripted, built-in)
Data Store (loadable, built-in)
Deep Infer (scripted, bundled in Deep Infer extension)
Dice Computation (loadable, bundled in Dice Computation extension)
DICOM (scripted, built-in)
DICOM2Full Brain Tractography (scripted, bundled in Slicer DMRI extension)
DICOMPatcher (scripted, built-in)
Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
Dicom Sro Export (scripted, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
DICOMTract to VTK (cli, bundled in Slicer DMRI extension)
Diffusion Tensor Scalar Measurements (cli, bundled in Slicer DMRI extension)
Diffusion Weighted Volume Masking (cli, bundled in Slicer DMRI extension)
Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
DMRIInstall (scripted, built-in)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Dose Morphology (loadable, bundled in Margin Calculator extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Downsize (cli, bundled in CMFreg extension)
d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
Dump SEGFrame (cli)
Dvh Comparison (scripted, bundled in Slicer RT extension)
DWIConvert (cli, built-in)
DWITo DTIEstimation (cli, bundled in Slicer DMRI extension)
DWModeling (cli, bundled in Slicer Prostate extension)
Easy Clip (scripted, bundled in Easy Clip extension)
Editor (scripted, built-in)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
EMSegment Quick (loadable, built-in)
EMSegment Transform To New Format (cli, built-in)
Encode SEG (cli)
Endoscopy (scripted, built-in)
Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
Execute System Command (cli, bundled in Chest Imaging Platform extension)
External Beam Planning (loadable, bundled in Slicer RT extension)
Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
Extract Fissure Boundary From Lobe Map (cli, bundled in Chest Imaging Platform extension)
Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Extract Skeleton (cli, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Fiber Bundle Label Select (cli, bundled in Slicer DMRI extension)
Fiber Bundle To Label Map (scripted, bundled in Slicer DMRI extension)
Fiber Tract Measurements (cli, bundled in Slicer DMRI extension)
Fiducial Registration (cli, built-in)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Film Dosimetry Analysis (scripted, bundled in Film Dosimetry Analysis extension)
Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
Find Patch Match (cli, bundled in Chest Imaging Platform extension)
Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
Gaussian Blur Image Filter (cli, built-in)
Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
Generate Model (cli, bundled in Chest Imaging Platform extension)
Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
Generate Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Simple Lung Mask (cli, bundled in Chest Imaging Platform extension)
Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
Gradient Anisotropic Diffusion (cli, built-in)
Graph Cut Interactive Segmenter (loadable, bundled in Graph Cut Segment extension)
Graph Cuts Optimization (cli, bundled in Chest Imaging Platform extension)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
Histogram Matching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
i Gyne (scripted, bundled in i Gyne extension)
Image Label Combine (cli, built-in)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Island Removal (cli, built-in)
Isodose (loadable, bundled in Slicer RT extension)
itkimage2paramap (cli, bundled in DCMQI extension)
itkimage2segimage (cli, bundled in DCMQI extension)
KUtil (scripted, bundled in Carrera Slice extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Label Map Smoothing (cli, built-in)
Label Object Statistics (scripted, bundled in IASEM extension)
Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Label Statistics (scripted, built-in)
Landmark Registration (scripted, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Margin Calculator (scripted, bundled in Margin Calculator extension)
Markups (loadable, built-in)
Markups To Model (loadable, bundled in Slicer IGT extension)
Mask Creation (cli, bundled in CMFreg extension)
Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
Mask Scalar Volume (cli, built-in)
Median Image Filter (cli, built-in)
Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
Merge Models (cli, built-in)
Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Metafile Importer (loadable, bundled in Sequences extension)
Model Maker (cli, built-in)
Model Registration (scripted, bundled in Slicer IGT extension)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Model To Model Distance (cli, bundled in Model To Model Distance extension)
mp Review (scripted, bundled in mp Review extension)
mp Review Preprocessor (scripted, bundled in mp Review extension)
Multiply Scalar Volumes (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
Needle Finder (scripted, bundled in Needle Finder extension)
Non Growing (cli, bundled in CMFreg extension)
Open CV (loadable, bundled in Slicer Open CV extension)
Open IGTLink IF (loadable, built-in)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Orient Scalar Volume (cli, built-in)
paramap2itkimage (cli, bundled in DCMQI extension)
Particles Display (loadable, bundled in Chest Imaging Platform extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
PBNRR (cli, bundled in PBNRR extension)
Perform Metric Test (cli, built-in)
Perform Morphological (cli, bundled in Chest Imaging Platform extension)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
Perturb Particles (cli, bundled in Chest Imaging Platform extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
PETLiver Uptake Measurement (cli, bundled in PETLiver Uptake Measurement extension)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Philips4d Us Dicom Patcher (scripted, bundled in Slicer Heart extension)
Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Planar Image (loadable, bundled in Slicer RT extension)
plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Plastimatch Py (loadable, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)
Plus Model Catalog Browser (scripted, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Probe Volume With Model (cli, built-in)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Q3DC (scripted, bundled in Q3DC extension)
Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
Quality Control (cli, bundled in Chest Imaging Platform extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Quantitative Reporting (scripted, bundled in Quantitative Reporting extension)
Quick TCGA (loadable, bundled in Slicer Pathology extension)
Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Reformat (loadable, built-in)
Region Type (loadable, bundled in Chest Imaging Platform extension)
Region Type Locations To ROIVolume (cli, bundled in Chest Imaging Platform extension)
Register CT (cli, bundled in Chest Imaging Platform extension)
Register Label Maps (cli, bundled in Chest Imaging Platform extension)
Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
Remap Label Map (cli, bundled in Chest Imaging Platform extension)
Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
Resample CT (cli, bundled in Chest Imaging Platform extension)
Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
Resample DTIVolume (cli, built-in)
Resample Label Map (cli, bundled in Chest Imaging Platform extension)
Resample Scalar Vector DWIVolume (cli, built-in)
Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
Resection Volume (scripted, bundled in Resection Planner extension)
ROBEXBrain Extraction (cli, bundled in ROBEXBrain Extraction extension)
Robust Statistics Segmenter (cli, built-in)
Sample Data (scripted, built-in)
Scan Convert Curvilinear Array (cli, bundled in Slicer ITKUltrasound extension)
Scan Convert Phased Array3D (cli, bundled in Slicer ITKUltrasound extension)
Scan Convert Slice Series (cli, bundled in Slicer ITKUltrasound extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
Scattered Transform (cli, bundled in Scattered Transform extension)
Scene Views (loadable, built-in)
Screen Capture (scripted, built-in)
SEG2NRRD (cli)
segimage2itkimage (cli, bundled in DCMQI extension)
Segmentations (loadable, built-in)
Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
Segment CAD (scripted, bundled in Open CAD extension)
Segment Comparison (loadable, bundled in Slicer RT extension)
Segment Editor (scripted, built-in)
Segment Editor Fast Marching (scripted, bundled in Segment Editor Extra Effects extension)
Segment Editor Flood Filling (scripted, bundled in Segment Editor Extra Effects extension)
Segment Editor Watershed (scripted, bundled in Segment Editor Extra Effects extension)
Segment Lung Airways (cli, bundled in Chest Imaging Platform extension)
Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
Segment Morphology (loadable, bundled in Slicer RT extension)
Segment Statistics (scripted, built-in)
Sequence Browser (loadable, bundled in Sequences extension)
Sequences (loadable, bundled in Sequences extension)
Shape Quantifier (scripted, bundled in Shape Quantifier extension)
Shape Quantifier Core (scripted, bundled in Shape Quantifier extension)
Short Cut Core (loadable, bundled in Slicer Pathology extension)
Simple Filters (scripted, built-in)
Simple Region Growing Segmentation (cli, built-in)
Skull Stripper (cli, bundled in Skull Stripper extension)
Slicer Astro Data Probe (scripted, bundled in Slicer Astro extension)
Slicer Pathology (scripted, bundled in Slicer Pathology extension)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Slice Tracker (scripted, bundled in Slice Tracker extension)
Slice Tracker Registration (scripted, bundled in Slice Tracker extension)
Slice Tracker ZFrame Registration (scripted, bundled in Slice Tracker extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
Subject Hierarchy (loadable, built-in)
Subtract Scalar Volumes (cli, built-in)
Surface Registration (scripted, bundled in CMFreg extension)
Surface Toolbox (scripted, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Synthetic RTDose (scripted, bundled in Margin Calculator extension)
T1Mapping (cli, bundled in T1Mapping extension)
Tables (loadable, built-in)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Terminologies (loadable, built-in)
Texture Model (scripted, bundled in Slicer IGT extension)
Threshold Scalar Volume (cli, built-in)
tid1500reader (cli, bundled in DCMQI extension)
tid1500writer (cli, bundled in DCMQI extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Tractography Display (loadable, bundled in Slicer DMRI extension)
Tractography Interactive Seeding (loadable, bundled in Slicer DMRI extension)
Tractography Label Map Seeding (cli, bundled in Slicer DMRI extension)
Transfer Region And Type Indices To From Points (cli, bundled in Chest Imaging Platform extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Transforms (loadable, built-in)
UKFTractography (cli, bundled in UKFTractography extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Units (loadable, built-in)
Valve View (scripted, bundled in Slicer Heart extension)
VBRAINSDemon Warp (cli, built-in)
Vector To Scalar Volume (scripted, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)
Vff File Reader (loadable, bundled in Slicer RT extension)
View Controllers (loadable, built-in)
Viewpoint (scripted, bundled in Slicer IGT extension)
Volume Clip To Label (scripted, bundled in Slice Tracker extension)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Volume Rendering (loadable, built-in)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Volumes (loadable, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
VTK to DICOMTract (cli, bundled in Slicer DMRI extension)
Wasp (scripted, bundled in Wasp extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Welcome (loadable, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Xnat Slicer (scripted, bundled in XNATSlicer extension)
ZFrame Calibration (cli, bundled in Slice Tracker extension)

@@ Line 2: / Line 2: @@
 <noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude>
 = Modules by category =
 categories:
+* [[#Modules_by_category_Astronomy|Astronomy]]
 * [[#Modules_by_category_Cardiac|Cardiac]]
 * [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 * [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]
-* [[#Modules_by_category_ML|Machine Learning]]
-** [[#Modules_by_category_Chest_Imaging_Platform_Modules|Modules]]
 ** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]]
 *** [[#Modules_by_category_Toolkit_Particles|Particles]]
@@ Line 21: / Line 20: @@
 ** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
 ** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
+** [[#Modules_by_category_Developer_Tools_Segment_Editor_Extensions|Segment Editor Extensions]]
+** [[#Modules_by_category_Developer_Tools_Utils|Utils]]
 * [[#Modules_by_category_Diffusion|Diffusion]]
 ** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 ** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
 ** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
+** [[#Modules_by_category_Diffusion_Import_and_Export|Import and Export]]
 ** [[#Modules_by_category_Diffusion_Process|Process]]
 ** [[#Modules_by_category_Diffusion_Quantify|Quantify]]
 ** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
-*** [[#Modules_by_category_Diffusion_Tractography_Region_based|Region-based]]
+*** [[#Modules_by_category_Tractography_Region-based|Region-based]]
 ** [[#Modules_by_category_Diffusion_Utilities|Utilities]]
 * [[#Modules_by_category_Editor_Effects|Editor Effects]]
@@ Line 50: / Line 52: @@
 *** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 **** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
+* [[#Modules_by_category_Libraries|Libraries]]
+* [[#Modules_by_category_Machine_Learning|Machine Learning]]
 * [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 * [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
@@ Line 55: / Line 59: @@
 * [[#Modules_by_category_Microscopy|Microscopy]]
 * [[#Modules_by_category_MultiVolume_Support|Multi Volume Support]]
+* [[#Modules_by_category_Pathology|Pathology]]
+* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 * [[#Modules_by_category_Plastimatch|Plastimatch]]
 ** [[#Modules_by_category_Plastimatch_Registration|Registration]]
@@ Line 60: / Line 66: @@
 * [[#Modules_by_category_Quantification|Quantification]]
 ** [[#Modules_by_category_Quantification_ChangeQuantification|Change Quantification]]
+* [[#Modules_by_category_Radiology|Radiology]]
 * [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 * [[#Modules_by_category_Registration|Registration]]
@@ Line 69: / Line 76: @@
 ** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 * [[#Modules_by_category_Sequences|Sequences]]
-* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 * [[#Modules_by_category_Slicelets|Slicelets]]
+* [[#Modules_by_category_SlicerProstate|Slicer Prostate]]
 * [[#Modules_by_category_Surface_Models|Surface Models]]
 * [[#Modules_by_category_TestCases|Test Cases]]
@@ Line 77: / Line 84: @@
 ** [[#Modules_by_category_Testing_SlicerRT_Tests|Slicer RT Tests]]
 ** [[#Modules_by_category_Testing_TestCases|Test Cases]]
+* [[#Modules_by_category_Ultrasound|Ultrasound]]
+* [[#Modules_by_category_Uncategorized|Uncategorized]]
 * [[#Modules_by_category_Utilities|Utilities]]
 ** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 * [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
+* [[#Modules_by_category_Web_System_Tools|Web System Tools]]
 * [[#Modules_by_category_Wizards|Wizards]]
+* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
+<span id='Modules_by_category_Astronomy'></span>
+== Astronomy ==
+* [[Documentation/Nightly/Modules/AstroVolume|Astro Volume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Modules/AstroSmoothing|Astro Smoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Astro Sample Data]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Modules/AstroModeling|Astro Modeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Astro Welcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro Data Probe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
 <span id='Modules_by_category_Cardiac'></span>
 == Cardiac ==
@@ Line 100: / Line 119: @@
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-<span id='Modules_by_category_ML'></span>
-== Machine Learning ==
-* [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]]
 <span id='Modules_by_category_Chest_Imaging_Platform'></span>
 == Chest Imaging Platform ==
-* [http://www.chestimagingplatform.org Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [http://www.chestimagingplatform.org Airway Inspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-<span id='Modules_by_category_Chest_Imaging_Platform_Modules'></span>
-=== Modules ===
 * [http://www.chestimagingplatform.org CIP MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Trachea Stent Planning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Lesion Model]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Airway Inspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Calcium Scoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Parenchyma Analysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Parenchyma Subtype Training]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Points Labelling]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 <span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span>
 === Toolkit ===
@@ Line 123: / Line 139: @@
 * [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 140: / Line 156: @@
 * [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 147: / Line 164: @@
 * [http://www.chestimagingplatform.org Extract Fissure Boundary From Lobe Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Graph Cuts Optimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 161: / Line 178: @@
 * [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 <span id='Modules_by_category_Toolkit_Registration'></span>
@@ Line 173: / Line 190: @@
 ==== Segmentation ====
 * [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Segment Lung Airways]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Simple Lung Mask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 183: / Line 202: @@
 * [http://www.chestimagingplatform.org Region Type Locations To ROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Model]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Execute System Command]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 198: / Line 218: @@
 <span id='Modules_by_category_CIP'></span>
 == CIP ==
+* [http://www.chestimagingplatform.org CIP ]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 <span id='Modules_by_category_Converters'></span>
@@ Line 216: / Line 237: @@
 * [[Documentation/Nightly/Extensions/DebuggingTools|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small>
 * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Extensions/DebuggingTools|Node Info]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small>
 * [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
 * [[Documentation/Nightly/Modules/ExtensionStats|Extension Stats]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small>
@@ Line 223: / Line 245: @@
 <span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 === DICOM Plugins ===
+* DICOMParametric Map Plugin
 * Dicom Ultrasound Plugin
 * DICOMSegmentation Plugin
 * DICOMSlicer Data Bundle Plugin
+* DICOMTID1500Plugin
 * [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
+* DICOMScalar Volume Plugin
 * DICOMDiffusion Volume Plugin
 * DICOMLongitudinal PETCTPlugin
 * Dicom Sro Import Plugin
-* DICOMScalar Volume Plugin
 * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 * Dicom Rt Import Export Plugin
@@ Line 238: / Line 262: @@
 * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Quick TCGAEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Short Cut Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 <span id='Modules_by_category_Developer_Tools_Matlab'></span>
 === Matlab ===
 * [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 * [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+<span id='Modules_by_category_Developer_Tools_Segment_Editor_Extensions'></span>
+=== Segment Editor Extensions ===
+* [[Documentation/Nightly/Extensions/PETTumorSegmentation|Segment Editor PETTumor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+<span id='Modules_by_category_Developer_Tools_Utils'></span>
+=== Utils ===
+* [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 <span id='Modules_by_category_Diffusion'></span>
 == Diffusion ==
+* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
 <span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 === Diffusion Data Conversion ===
-* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]   <small>(cli, built-in)</small>
+* DWIConvert    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 === Diffusion Tensor Images ===
 * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]] extension)</small>
 <span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 === Diffusion Weighted Images ===
 * BRAINSDWICleanup    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
-* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+=== Import and Export ===
+* DWIConvert    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract to VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK to DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 <span id='Modules_by_category_Diffusion_Process'></span>
 === Process ===
-* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Brain Masking]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/DWIToDTIEstimation|Diffusion Tensor Estimation]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 <span id='Modules_by_category_Diffusion_Quantify'></span>
 === Quantify ===
-* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberTractMeasurements|Fiber Tract Measurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 <span id='Modules_by_category_Diffusion_Tractography'></span>
 === Tractography ===
-* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Interactive Seeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Seeding]]     <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
-<span id='Modules_by_category_Diffusion_Tractography_Region_based'></span>
+<span id='Modules_by_category_Tractography_Region-based'></span>
 ==== Region-based ====
-* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography ROI Seeding]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Tractography ROI Selection]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Fiber Bundle Label Select]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 <span id='Modules_by_category_Diffusion_Utilities'></span>
 === Utilities ===
-* [[Documentation/Nightly/Modules/TractographyDICOMLoad|Tractography DICOM Load]] <small>(cli, built-in)</small>
+* BRAINSDWICleanup    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Modules/TractographyDICOMSave|Tractography DICOM Save]] <small>(cli, built-in)</small>
-* DWI to Full Brain Tractography    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2Full Brain Tractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 <span id='Modules_by_category_Editor_Effects'></span>
 == Editor Effects ==
 * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
@@ Line 304: / Line 330: @@
 == Examples ==
 * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Quick TCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Short Cut Core]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
+* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
-* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
 <span id='Modules_by_category_Exporter'></span>
 == Exporter ==
@@ Line 320: / Line 348: @@
 * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/AstroSmoothing|Astro Smoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
 * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
@@ Line 331: / Line 360: @@
 * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/OpenCVExample|Blend Vector Volumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|Open CVExample]] extension)</small>
 <span id='Modules_by_category_Filtering_Denoising'></span>
 === Denoising ===
@@ Line 343: / Line 373: @@
 <span id='Modules_by_category_IGT'></span>
 == IGT ==
-* [https://github.com/SlicerIGT/LumpNav Viewpoint]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [https://github.com/SlicerIGT/LumpNav Lump Nav]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Plus Model Catalog Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
@@ Line 353: / Line 383: @@
 * [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
 * [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 <span id='Modules_by_category_Informatics'></span>
 == Informatics ==
+* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 * [[Documentation/Nightly/Extensions/mpReview|mp Review Preprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
-* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 * [[Documentation/Nightly/Extensions/mpReview|mp Review]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
+* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
+* Dump SEGFrame    <small>(cli)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* Terminologies    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
@@ Line 382: / Line 418: @@
 * [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] extension)</small>
 <span id='Modules_by_category_Informatics_Converters'></span>
 === Converters ===
+* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]]    <small>(cli)</small>
 <span id='Modules_by_category_Legacy'></span>
 == Legacy ==
 <span id='Modules_by_category_Legacy_Converters'></span>
@@ Line 405: / Line 445: @@
 ===== Test =====
 * Diffusion Tensor Test    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Libraries'></span>
+== Libraries ==
+* [[Documentation/Nightly/Extensions/SlicerOpenCV|Open CV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|Slicer Open CV]] extension)</small>
+<span id='Modules_by_category_Machine_Learning'></span>
+== Machine Learning ==
+* [[Documentation/Nightly/Modules/DeepInfer|Deep Infer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|Deep Infer]] extension)</small>
 <span id='Modules_by_category_Margin_Calculator'></span>
 == Margin Calculator ==
 * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 <span id='Modules_by_category_Mesh_Generation'></span>
 == Mesh Generation ==
@@ Line 419: / Line 462: @@
 == MeshGeneration ==
 * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
-* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 <span id='Modules_by_category_Microscopy'></span>
 == Microscopy ==
@@ Line 431: / Line 473: @@
 * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+<span id='Modules_by_category_Pathology'></span>
+== Pathology ==
+* [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
+<span id='Modules_by_category_Perk_Tutor'></span>
+== Perk Tutor ==
+* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 <span id='Modules_by_category_Plastimatch'></span>
 == Plastimatch ==
@@ Line 445: / Line 496: @@
 == Quantification ==
 * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
+* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]] extension)</small>
 * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
-* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
+* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
 * [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+* [[Documentation/Nightly/Modules/ShapeQuantifier|Shape Quantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
 * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
@@ Line 453: / Line 506: @@
 * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* Segment Statistics    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/MeshStatistics|Mesh Statistics]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 * [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 * BRAINSLabel Stats    <small>(cli, built-in)</small>
@@ Line 459: / Line 514: @@
 * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 * [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 * [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro Data Probe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Modules/AnglePlanes|Angle Planes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
 * [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [[Documentation/Nightly/Modules/PickAndPaint|Pick And Paint]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] extension)</small>
 * [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
 <span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 === ChangeQuantification ===
 * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+<span id='Modules_by_category_Radiology'></span>
+== Radiology ==
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker ZFrame Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
 <span id='Modules_by_category_Radiotherapy'></span>
 == Radiotherapy ==
 * [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Dicom Rt Import Export]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|External Beam Planning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 <span id='Modules_by_category_Registration'></span>
@@ Line 492: / Line 556: @@
 === CMF Registration ===
 * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 <span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 ==== Voxelbase Registration ====
@@ Line 510: / Line 574: @@
 * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]] extension)</small>
 * VBRAINSDemon Warp    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Segmentation'></span>
 == Segmentation ==
+* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrain Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrain Extraction]] extension)</small>
 * EMSegment Quick    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 * [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Volume Clip To Label]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
 * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
-* [[Documentation/Nightly/Modules/SegmentEditor|Segment Editor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/SegmentEditor|Segment Editor]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 * [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Fast Marching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
+* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
 * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Flood Filling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
 * [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 * [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] extension)</small>
 * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Watershed]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
 <span id='Modules_by_category_Segmentation_Specialized'></span>
 === Specialized ===
@@ Line 535: / Line 607: @@
 * EMSegment Command Line    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Sequences'></span>
 == Sequences ==
 * [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
-<span id='Modules_by_category_Shape_Analysis'></span>
-== Shape Analysis ==
-* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 <span id='Modules_by_category_Slicelets'></span>
 == Slicelets ==
+* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis] extension)</small>
 * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+<span id='Modules_by_category_SlicerProstate'></span>
+== SlicerProstate ==
+* [[Documentation/Nightly/Extensions/SliceTracker|ZFrame Calibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
 <span id='Modules_by_category_Surface_Models'></span>
 == Surface Models ==
@@ Line 554: / Line 626: @@
 * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
+* [[Documentation/Nightly/Modules/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 * [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Texture Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 <span id='Modules_by_category_TestCases'></span>
 == TestCases ==
@@ Line 581: / Line 654: @@
 === SlicerRT Tests ===
 * IGRTWorkflow Self Test
-* Dicom Rt Import Self Test
 * [[Documentation/Nightly/Extensions/SlicerRT|Batch Structure Set Conversion]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 <span id='Modules_by_category_Testing_TestCases'></span>
@@ Line 588: / Line 660: @@
 * Add Storable Data After Scene View Test
 * test tractography display
+* Slicer Transform Interaction Test1
 * RSNAQuant Tutorial
 * Neurosurgical Planning Tutorial Markups Self Test
@@ Line 593: / Line 666: @@
 * Fiducial Layout Switch Bug1914
 * Graph Cut Segment Self Test
+* Slicer Bounds Test
+* Util Test
 * Charting    <small>(scripted, built-in)</small>
 * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] extension)</small>
@@ Line 599: / Line 674: @@
 * JRC2013Vis
 * Add Many Markups Fiducial Test
-* Slicer4Minute    <small>(scripted, built-in)</small>
 * Crop Volume Self Test
 * Slice Link Logic    <small>(scripted, built-in)</small>
@@ Line 605: / Line 679: @@
 * slicer Close Crash Bug2590
 * CLIEvent Test
+* [[Documentation/Nightly/Extensions/SlicerDMRI|Nsg Plan Tracto]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * Markups Widgets Self Test
 * Tables Self Test
+* Slicer Orientation Selector Test
 * Markups In Views Self Test
 * Two CLIs In Parallel Test
@@ Line 619: / Line 695: @@
 * Colors Scalar Bar Self Test
 * BRAINSFit Rigid Registration Crash Issue4139
+* Slicer4Minute    <small>(scripted, built-in)</small>
 * View Controllers Slice Interpolation Bug1926
+<span id='Modules_by_category_Ultrasound'></span>
+== Ultrasound ==
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Curvilinear Array]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Phased Array3D]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Slice Series]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
+<span id='Modules_by_category_Uncategorized'></span>
+== Uncategorized ==
+* [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier Core]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
+* [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor Lib]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small>
 <span id='Modules_by_category_Utilities'></span>
 == Utilities ==
+* [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+* DICOMPatcher    <small>(scripted, built-in)</small>
 * BRAINSStrip Rotation    <small>(cli, built-in)</small>
 * EMSegment Transform To New Format    <small>(cli, built-in)</small>
@@ Line 631: / Line 719: @@
 == Vascular Modeling Toolkit ==
 * [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
-* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+<span id='Modules_by_category_Web_System_Tools'></span>
+== Web System Tools ==
+* [[Documentation/Nightly/Modules/DatabaseInteractor|Database Interactor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small>
 <span id='Modules_by_category_Wizards'></span>
 == Wizards ==
 * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+<span id='Modules_by_category_XNATSlicer'></span>
+== XNATSlicer ==
+* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 = Modules by name =
 modules:
 * [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
@@ Line 646: / Line 739: @@
 * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+* [[Documentation/Nightly/Modules/AnglePlanes|Angle Planes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
 * [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/AstroModeling|Astro Modeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Astro Sample Data]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Modules/AstroSmoothing|Astro Smoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Modules/AstroVolume|Astro Volume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Astro Welcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+* [[Documentation/Nightly/Extensions/OpenCVExample|Blend Vector Volumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|Open CVExample]] extension)</small>
 * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
@@ Line 662: / Line 761: @@
 * BRAINSTransform Convert    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
@@ Line 668: / Line 766: @@
 * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+* [http://www.chestimagingplatform.org CIP ]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Calcium Scoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Lesion Model]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Parenchyma Analysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Parenchyma Subtype Training]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Points Labelling]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org CIP Trachea Stent Planning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 708: / Line 811: @@
 * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
 * [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/DatabaseInteractor|Database Interactor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small>
+* [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor Lib]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small>
 * [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/DeepInfer|Deep Infer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|Deep Infer]] extension)</small>
 * [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
 * [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
-* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2Full Brain Tractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
+* DICOMPatcher    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Dicom Rt Import Export]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract to VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
+* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
 * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
+* Dump SEGFrame    <small>(cli)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * DWIConvert    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
-* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
+* [[Documentation/Nightly/Modules/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 * [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
@@ Line 737: / Line 846: @@
 * EMSegment Quick    <small>(loadable, built-in)</small>
 * EMSegment Transform To New Format    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]]    <small>(cli)</small>
 * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 * [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Execute System Command]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|External Beam Planning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Extract Fissure Boundary From Lobe Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 747: / Line 858: @@
 * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
-* Fiber Bundle Label Select    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Fiber Bundle Label Select]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/FiberTractMeasurements|Fiber Tract Measurements]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/FiberTractMeasurements|Fiber Tract Measurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis] extension)</small>
 * [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 758: / Line 870: @@
 * [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Find Patch Match]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
-* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 * [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
@@ Line 771: / Line 881: @@
 * [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Model]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Simple Lung Mask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 783: / Line 895: @@
 * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
+* [http://www.chestimagingplatform.org Graph Cuts Optimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
@@ Line 796: / Line 909: @@
 * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
-* [http://www.chestimagingplatform.org Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * Island Removal    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
@@ Line 811: / Line 925: @@
 * [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
-* [https://github.com/SlicerIGT/LumpNav Lump Nav]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
@@ Line 822: / Line 935: @@
 * [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
 * [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
-* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+* [[Documentation/Nightly/Modules/MeshStatistics|Mesh Statistics]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
@@ Line 830: / Line 943: @@
 * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
-* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/Nightly/Extensions/mpReview|mp Review]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
 * [[Documentation/Nightly/Extensions/mpReview|mp Review Preprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
@@ Line 840: / Line 951: @@
 * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerOpenCV|Open CV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|Slicer Open CV]] extension)</small>
 * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 * [http://www.chestimagingplatform.org Particles Display]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
@@ Line 848: / Line 961: @@
 * Perform Metric Test    <small>(cli, built-in)</small>
 * [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 * [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]] extension)</small>
 * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [[Documentation/Nightly/Modules/PickAndPaint|Pick And Paint]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
@@ Line 862: / Line 977: @@
 * [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Plus Model Catalog Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
+* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
 * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 * [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Quick TCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 * [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
@@ Line 890: / Line 1,009: @@
 * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 * [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [[Documentation/Nightly/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
+* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrain Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrain Extraction]] extension)</small>
 * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Curvilinear Array]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Phased Array3D]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
+* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Slice Series]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small>
 * [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]] extension)</small>
 * [[Documentation/Nightly/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Extensions/SlicerRT|Segment Editor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/SegmentEditor|Segment Editor]]    <small>(scripted, built-in)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Fast Marching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Flood Filling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
+* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Watershed]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small>
+* [http://www.chestimagingplatform.org Segment Lung Airways]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* Segment Statistics    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+* [[Documentation/Nightly/Modules/ShapeQuantifier|Shape Quantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
+* [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier Core]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Short Cut Core]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro Data Probe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small>
 * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker ZFrame Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
+* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
@@ Line 920: / Line 1,062: @@
 * [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
+* Terminologies    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Texture Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
+* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 * [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
-* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Interactive Seeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
-* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [http://www.chestimagingplatform.org Transfer Region And Type Indices To From Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 * [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
@@ Line 937: / Line 1,084: @@
 * [[Documentation/Nightly/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
-* [https://github.com/SlicerIGT/LumpNav Viewpoint]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|Volume Clip To Label]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>
 * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
@@ Line 944: / Line 1,092: @@
 * [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK to DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small>
 * [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 * [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+* [[Documentation/Nightly/Extensions/SliceTracker|ZFrame Calibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small>

Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"

Revision as of 21:08, 18 April 2017

Modules by category

Astronomy

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

Editor Extensions

Matlab

Segment Editor Extensions

Utils

Diffusion

Diffusion Data Conversion

Diffusion Tensor Images

Diffusion Weighted Images

Import and Export

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test

Libraries

Machine Learning

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Pathology

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiology

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Slicelets

SlicerProstate

Surface Models

TestCases