Documentation/Nightly/FAQ/Viewing and Resampling
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For the stable Slicer documentation, visit the 4.10 page.
Viewing and Resampling
What coordinate systems does Slicer use?
How can I use the reformat widget view to resample my images?
You can do something like this in the python console:
red = getNodes('vtkMRMLSliceNode*')['Red'] m = vtk.vtkMatrix4x4() m.DeepCopy(red.GetSliceToRAS()) m.Invert() t = slicer.vtkMRMLLinearTransformNode() t.SetAndObserveMatrixTransformToParent(m)
Then put your volume under “t" or provide "t" as the transform to one of the Resample modules.