|
|
| (47 intermediate revisions by 4 users not shown) |
| Line 1: |
Line 1: |
| − | <noinclude>{{documentation/versioncheck}}</noinclude> | + | <noinclude>{{documentation/versioncheck}} |
| − | <!-- ---------------------------- -->
| + | </noinclude> |
| − | {{documentation/{{documentation/version}}/module-header}}
| |
| − | <!-- ---------------------------- -->
| |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
| |
| − | {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
| |
| − | {{documentation/{{documentation/version}}/module-introduction-row}}
| |
| − | Extension: [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIABrowser]]<br>
| |
| − | Acknowledgments:
| |
| − | This work is funded by the National Institutes of Health, National Cancer Institute through the Grant [http://qiicr.org Quantitative Image Informatics for Cancer Reasearch (QIICR)] (U24 CA180918) (PIs Kikinis and Fedorov).<br>
| |
| − | Authors: Alireza Mehrtash({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}})<br>
| |
| − | Contact: Alireza Mehrtash, mehrtash at bwh dot harvard dot edu<br>
| |
| − | | |
| − | License: [http://www.slicer.org/pages/LicenseText Slicer License]
| |
| − | | |
| − | {{documentation/{{documentation/version}}/module-introduction-logo-gallery
| |
| − | |{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
| |
| − | |{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
| |
| − | |{{collaborator|logo|namic}}|{{collaborator|longname|namic}}
| |
| − | }}
| |
| − | | |
| − | {{documentation/{{documentation/version}}/module-introduction-end}}
| |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Module Description}}
| |
| − | The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public through a programmatic interface (REST API). TCIA Browser is a Slicer module by which the user can connect to the TCIA archive, browse different collections, patients, studies and series, download the images and visualize them in 3D Slicer.
| |
| − | | |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | | |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Tutorials}}
| |
| − | Not available at this time.
| |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Panels and their use}}
| |
| − | | |
| − | {|
| |
| − | * '''Step 1: Connect to the server'''
| |
| − | Press connect button to connect to TCIA archive with 3D Slicer unique API-KEY. TCIA will provide a list of available collections and the browser will pop up automatically.
| |
| − | If you have your own unique API and want to use that you can add your own API using the "+" button and then select it using the combo box.
| |
| − |
| |
| − | |[[Image:Tcia-browser-1.png|thumb|360px|Module GUI]]
| |
| − | |}
| |
| − | | |
| − | {|
| |
| − | * '''Step 2: Browse the collections'''
| |
| − | |[[Image:Tcia-browser-4.png|thumb|820px|Module GUI]]
| |
| − | |}
| |
| − | | |
| − | {|
| |
| − | * '''Step 3: Download a Series'''
| |
| − | |[[Image:Tcia-browser-5.png|thumb|720px|Module GUI]]
| |
| − | |
| |
| − | | |
| − | |}
| |
| − | | |
| − | | |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Similar Modules}}
| |
| − | * [[Documentation/4.3/Extensions/XNATSlicer|XNATSlicer]]
| |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|References}}
| |
| − | | |
| − | * [http://qiicr.org/ Quantitative Image Informatics for Cancer Research (QIICR)]
| |
| − | * [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin Quantitative Imaging Network (QIN)]
| |
| − | * [http://cancerimagingarchive.net/ TCIA Home Page]
| |
| − | * [https://wiki.cancerimagingarchive.net/display/Public/TCIA+Programmatic+Interface+%28REST+API%29+Usage+Guide TCIA Rest API Documentation]
| |
| − | * [http://www.na-mic.org/Wiki/index.php/2014_Project_Week:TCIA_Browser_Extension_in_Slicer Project page at NAMIC 2014 Project Week]
| |
| − | | |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-section|Information for Developers}}
| |
| − | * [https://github.com/QIICR/TCIABrowser Source Code]
| |
| − | {{documentation/{{documentation/version}}/module-developerinfo}}
| |
| − | | |
| − | <!-- ---------------------------- -->
| |
| − | {{documentation/{{documentation/version}}/module-footer}}
| |
| | [[Category:Documentation/{{documentation/version}}/Modules/Informatics]] | | [[Category:Documentation/{{documentation/version}}/Modules/Informatics]] |
| − | <!-- ---------------------------- -->
| + | '''Please see documentation of this module here: https://github.com/QIICR/TCIABrowser''' |
