Difference between revisions of "Documentation/Nightly/Extensions/SlicerRT"

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{{documentation/{{documentation/version}}/module-header}}
 
{{documentation/{{documentation/version}}/module-header}}
 
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[[File:LogoCco.png|Cancer Care Ontario]]
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[[{{collaborator|logo|cco}}]] &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
[[File:Logo-SparKit.png|SparKit]]
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[[{{collaborator|logo|sparkit}}]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
[[File:LogoOCAIRO.jpg|OCAIRO]]
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[[{{collaborator|logo|ocairo}}]]
 
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
Authors: <b>Csaba Pinter</b> (PerkLab, Queen's University), <b>Andras Lasso</b> (PerkLab, Queen's University), <b>Kevin Wang</b> (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
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Authors: <b>Csaba Pinter</b> (PerkLab, Queen's University), <b>Andras Lasso</b> (PerkLab, Queen's University)<br>
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)<br>
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Contributors: Greg Sharp (Massachusetts General Hospital), <b>Kevin Wang</b> (Princess Margaret Hospital, UHN Toronto), Steve Pieper (Isomics)<br>
 
Contacts:
 
Contacts:
 
* Csaba Pinter, <email>csaba.pinter@queensu.ca</email>
 
* Csaba Pinter, <email>csaba.pinter@queensu.ca</email>
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|
 
|
  
*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]], [http://www.slicer.org/slicerWiki/index.php/Documentation/Labs/DICOMExport export]
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*[[Documentation/{{documentation/version}}/Modules/ExternalBeamPlanning|External Beam Planning]] (Treatment planning)
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
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* Dose analysis
*[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
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**[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
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**[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
*[[Documentation/{{documentation/version}}/Modules/ExternalBeamPlanning|External Beam Planning]]
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**[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]] (Gamma dose similarity index)
*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
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**[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
*[[Documentation/{{documentation/version}}/Modules/SegmentComparison|Segment comparison]]
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* Contour analysis
*[[Documentation/{{documentation/version}}/Modules/SegmentMorphology|Segment morphology]]
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**[[Documentation/{{documentation/version}}/Modules/SegmentComparison|Segment comparison]] (Dice Similarity Coefficient, Hausdorff distances)
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**[[Documentation/{{documentation/version}}/Modules/SegmentMorphology|Segment morphology]] (Add/remove margin, Unify, Intersect, etc.)
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* I/O
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**[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]], [http://www.slicer.org/slicerWiki/index.php/Documentation/Labs/DICOMExport export]
 
*[https://subversion.assembla.com/svn/slicerrt/trunk/SlicerRt/src/BatchProcessing/ Batch processing scripts] (currently only one is available for command-line conversion of RTSS to volume nodes)
 
*[https://subversion.assembla.com/svn/slicerrt/trunk/SlicerRt/src/BatchProcessing/ Batch processing scripts] (currently only one is available for command-line conversion of RTSS to volume nodes)
  
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* Former SlicerRT modules integrated to Slicer core
 
* Former SlicerRT modules integrated to Slicer core
**[[Documentation/{{documentation/version}}/Modules/SubjectHierarchy|Subject hierarchy]]
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**[[Documentation/{{documentation/version}}/Modules/Data|Subject hierarchy]]
**[[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Transform visualizer]]
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**[[Documentation/{{documentation/version}}/Modules/Transforms|Transform visualizer]]
 
**DICOM-RT export, as [http://www.slicer.org/slicerWiki/index.php/Documentation/Labs/DICOMExport improved DICOM export function]
 
**DICOM-RT export, as [http://www.slicer.org/slicerWiki/index.php/Documentation/Labs/DICOMExport improved DICOM export function]
 
**[[Documentation/{{documentation/version}}/Modules/Segmentations|Segmentations]]
 
**[[Documentation/{{documentation/version}}/Modules/Segmentations|Segmentations]]
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* Proton dose calculation
 
* Proton dose calculation
 
* Gel dosimetry analysis
 
* Gel dosimetry analysis
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* Tumor volume tracking
 
* Treatment plan similarity measurement in the cloud
 
* Treatment plan similarity measurement in the cloud
 
* Batch structure set conversion
 
* Batch structure set conversion

Revision as of 18:08, 7 February 2018

Home < Documentation < Nightly < Extensions < SlicerRT


For the latest Slicer documentation, visit the read-the-docs.


LogoCco.png          Logo-SparKit.png         LogoOCAIRO.jpg

Introduction and Acknowledgements

Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University)
Contributors: Greg Sharp (Massachusetts General Hospital), Kevin Wang (Princess Margaret Hospital, UHN Toronto), Steve Pieper (Isomics)
Contacts:

Website: slicerrt.org
License: Slicer license
Download/install: install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details on the download page)

Extension Description

SlicerRT Logo 3.0 128x128.png

  • SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
    SparKit is a project funded by Cancer Care Ontario and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
  • The SlicerRT extension incorporates Plastimatch modules and algorithms.
  • Additional information for users can be found on the User's Guide page

Modules

SlicerRT highlights


Use Cases

  • Comparison of dose maps and dose volume histograms from various treatment planning systems
  • Evaluation of the effect of different adaptive techniques (IGRT, image-based non-rigid patient motion compensation, etc.)
    • Calculate couch shift parameters for patient setup correction in IGRT
  • Dose accumulation with motion compensation
  • Testing of treatment planning algorithms
  • Calculation of PTV margin
  • Proton dose calculation
  • Gel dosimetry analysis
  • Tumor volume tracking
  • Treatment plan similarity measurement in the cloud
  • Batch structure set conversion


Tutorials

  • World Congress 2015 tutorial (recommended)
  • Summer NA-MIC week 2013 tutorial
    • Tutorial presentation: download from Slicer wiki
    • Sample data: download from MIDAS
  • ECR 2013 - Medical University Vienna workshop
    • Workshop material: download from NA-MIC.org
  • RSNA 2012 tutorial
  • Summer NA-MIC week 2012 tutorial (deprecated)
    • Tutorial presentation: download from the SlicerRT website

Similar Extensions

  • Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
  • Gel Dosimetry: Slicelet facilitating a streamlined workflow to perform true 3D gel dosimetry analysis for commissioning linacs and evaluating new dose calculation procedures
  • Film Dosimetry: Slicelet supporting workflow to perform 2D film dosimetry analysis for commissioning new radiation techniques and to validate the accuracy of radiation treatment by enabling visual comparison of the planned dose to the delivered dose

References

How to cite

Please cite the following paper when referring to SlicerRt in your publication:
C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, "SlicerRT – Radiation therapy research toolkit for 3D Slicer", Med. Phys., 39(10) pp. 6332-6338, 2012

@ARTICLE{Pinter2012,
  author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.},
  title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer},
  journal = {Med. Phys.},
  year = {2012},
  volume = {39},
  number = {10},
  pages = {6332-6338},
}

Information for Developers