Difference between revisions of "Documentation/Nightly/Extensions/SlicerDMRI"

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* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]: Computes scalar measures from a diffusion tensor dataset.  
 
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Maps]]: Computes scalar measures from a diffusion tensor dataset.  
 
* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]: Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer.  
 
* [[Documentation/Nightly/Modules/DWIConverter|DWIConverter]]: Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer.  
* DWI to Full Brain Tractography:
 
 
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]:  Implements DT image resampling through the use of itk Transforms.
 
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]:  Implements DT image resampling through the use of itk Transforms.
 
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]: Implements image and vector-image resampling through the use of its Transforms.
 
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]]: Implements image and vector-image resampling through the use of its Transforms.
 +
* [[Documentation/Nightly/Modules/TractographyDICOMLoad|Tractography DICOM Load]]: Utility for DICOM TrackSet conversion to Slicer-style VTK tractography.
 +
* [[Documentation/Nightly/Modules/TractographyDICOMSave|Tractography DICOM Save]]: Utility for conversion of Slicer-style VTK tractography to DICOM TrackSet.
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]: Allows the user to modify the display of diffusion tractography.
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]: Allows the user to modify the display of diffusion tractography.
 
* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]: Computes whole-fiber scalar measurements from a directory of VTK fiber bundle files
 
* [[Documentation/Nightly/Modules/FiberTractMeasurements|Tractography Measurements]]: Computes whole-fiber scalar measurements from a directory of VTK fiber bundle files
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* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]: Allows a user to set the specified label value in the label map at every vertex in each of the fibers in a bundle.
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Tractography to Mask Image]]: Allows a user to set the specified label value in the label map at every vertex in each of the fibers in a bundle.
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]: Traces fibers in a DWI Volume using the multiple tensor unscented Kalman Filter methodology.  
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]: Traces fibers in a DWI Volume using the multiple tensor unscented Kalman Filter methodology.  
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* DWI to Full Brain Tractography:
  
 
{{documentation/{{documentation/version}}/extension-section|References}}
 
{{documentation/{{documentation/version}}/extension-section|References}}

Revision as of 20:54, 11 October 2016

Home < Documentation < Nightly < Extensions < SlicerDMRI

For the stable Slicer documentation, visit the 4.10 page.

Introduction and Acknowledgements

DMRI 3D SLICER-icon.png

Extension: SlicerDMRI
Acknowledgments: This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:

  • NIH NCI ITCR U01CA199459 (Open Source Diffusion MRI Technology For Brain Cancer Research)
  • NIH P41EB015898 (National Center for Image-Guided Therapy)
  • NIH P41EB015902 (Neuroimaging Analysis Center)
  • National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

Major Contributors: Lauren J. O'Donnell (SPL), Isaiah Norton (Brigham and Women's Hospital), Raul San Jose Estepar (Brigham and Women's Hospital), Carl-Fredrik Westin (Brigham and Women's Hospital), Alex Yarmarkovich

License: Slicer License

Website: SlicerDMRI


SlicerDMRI  
Surgical Planning Laboratory  
NAC  
NCIGT  

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Extension Description

SlicerDMRI extension hosts various modules to facilitate

  • processing and management of diffusion MRI image data
  • utilizing diffusion MRI tractography for neuroscience studies and for planning image-guided interventions
  • quantitative analysis of diffusion MRI data

Modules

References

[1] O’Donnell LJ, Westin CF. An introduction to diffusion tensor image analysis. Neurosurgery clinics of North America. 2011 Apr 30;22(2):185-96.

Information for Developers