Difference between revisions of "Documentation/Nightly/Extensions/QuantitativeReporting"

From Slicer Wiki
Jump to: navigation, search
Line 10: Line 10:
 
Extension: [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]]<br>
 
Extension: [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]]<br>
 
Acknowledgments:
 
Acknowledgments:
This work is done as part of the [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin Quantitative Imaging Network (QIN)] initiative of the National Cancer Institute, and is funded by the National Institutes of Health, National Cancer Institute through the grants U24 CA180918 (PIs Kikinis & Fedorov) and U01 CA151261 (PI Fiona Fennessy).<br>
+
This work is done as part of the [http://itcr.nci.nih.gov/ Informatics Technology for Cancer Research (ITCR)] and [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin Quantitative Imaging Network (QIN)] initiatives of the National Cancer Institute, and is funded by the National Institutes of Health, National Cancer Institute through the grants U24 CA180918 (PIs Kikinis & Fedorov) and U01 CA151261 (PI Fiona Fennessy).<br>
 
Author: Andrey Fedorov ({{collaborator|name|spl}}), Nicole Aucoin ({{collaborator|name|spl}}), Steve Pieper ({{collaborator|name|spl}})<br>
 
Author: Andrey Fedorov ({{collaborator|name|spl}}), Nicole Aucoin ({{collaborator|name|spl}}), Steve Pieper ({{collaborator|name|spl}})<br>
 
Contact: Andrey Fedorov, fedorov at bwh dot harvard dot edu<br>
 
Contact: Andrey Fedorov, fedorov at bwh dot harvard dot edu<br>

Revision as of 14:17, 4 January 2016

Home < Documentation < Nightly < Extensions < QuantitativeReporting

For the stable Slicer documentation, visit the 4.10 page.

Introduction and Acknowledgements

Extension: Reporting
Acknowledgments: This work is done as part of the Informatics Technology for Cancer Research (ITCR) and Quantitative Imaging Network (QIN) initiatives of the National Cancer Institute, and is funded by the National Institutes of Health, National Cancer Institute through the grants U24 CA180918 (PIs Kikinis & Fedorov) and U01 CA151261 (PI Fiona Fennessy).
Author: Andrey Fedorov (SPL), Nicole Aucoin (SPL), Steve Pieper (SPL)
Contact: Andrey Fedorov, fedorov at bwh dot harvard dot edu
License: Slicer License

Surgical Planning Laboratory (SPL)  
Isomics, Inc.  
National Alliance for Medical Image Computing (NA-MIC)  
Quantitative Image Informatics for Cancer Research  


Modules

  • EncodeSEG: converter of segmentations into DICOM Segmentation image format
  • SEG2NRRD: converter of segmentations from DICOM Segmentation image format

Mapping from SlicerGenericAnatomyColors LUT and DICOM SEG Segmented Property

Currently, only labels that use GeneralAnatomy LUT are supported and can be converted to and from DICOM SEG format. The original LUT is available here: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/SlicerApplication/LookupTables/GenericAnatomyColors. The table below was compiled by David Clunie, Andrey Fedorov and Neha Agrawal to map most of the colors of the LUT to Segmented Property Category, Type and Modifier (when appropriate), which are required for encoding label segments in DICOM SEG. Google Spreadsheet with this content is here (access restricted).

Licensing and redistribution: per agreement between SNOMED and DICOM, "the agreement with SNOMED is to allow any implementer to use the terms included in DICOM in their implementations and products without fee". These codes have been incorporated into the DICOM standard: ftp://medical.nema.org/medical/dicom/final/cp1258_ft2.pdf, contains the items included in this table.

integer_label text_label color SegmentedPropertyCategory SegmentedPropertyType SegmentedPropertyModifier
1 tissue rgb(128,174,128) (T-D0050;SRT;Tissue) (T-D0050;SRT;Tissue)
2 bone rgb(241,214,145) (T-D0050;SRT;Tissue) (T-D016E;SRT;Bone)
3 skin rgb(177,122,101) (T-D0050;SRT;Tissue) (T-01000;SRT;Skin)
4 connective tissue rgb(111,184,210) (T-D0050;SRT;Tissue) (T-1A200;SRT;Connective Tissue)
5 blood rgb(216,101,79) (T-D0080;SRT;Body Substance) (T-C2000;SRT;Blood)
6 organ rgb(221,130,101) (T-D0050;SRT;Tissue) (T-1A310;SRT;Organ)
7 mass rgb(144,238,144) (M-01000;SRT;Morphologically Altered Structure) (M-03000;SRT;Mass)
8 muscle rgb(192,104,88) (T-D0050;SRT;Tissue) (T-13001;SRT;Muscle)
9 foreign object rgb(220,245,20) (A-00004;SRT;Physical Object) (M-30400;SRT;Foreign Body)
10 waste rgb(78,63,0) (A-00004;SRT;Physical Object) (F-61779;SRT;Waste Material)
11 teeth rgb(255,250,220) (T-D000A;SRT;Anatomical Structure) (T-5401E;SRT;Tooth)
12 fat rgb(230,220,70) (T-D0050;SRT;Tissue) (F-03D38;SRT;Body Fat)
13 gray matter rgb(200,200,235) (T-D0050;SRT;Tissue) (T-A0096;SRT;Gray Matter)
14 white matter rgb(250,250,210) (T-D0050;SRT;Tissue) (T-A0095;SRT;White Matter)
15 nerve rgb(244,214,49) (T-D0050;SRT;Tissue) (T-D0598;SRT;Nerve)
16 vein rgb(0,151,206) (T-D0050;SRT;Tissue) (T-4806E;SRT;Vein)
17 artery rgb(216,101,79) (T-D0050;SRT;Tissue) (T-41066;SRT;Artery)
18 capillary rgb(183,156,220) (T-D0050;SRT;Tissue) (T-40050;SRT;Capillary)
19 ligament rgb(183,214,211) (T-D0050;SRT;Tissue) (T-18010;SRT;Ligament)
20 tendon rgb(152,189,207) (T-D0050;SRT;Tissue) (T-17010;SRT;Tendon)
21 cartilage rgb(111,184,210) (T-D0050;SRT;Tissue) (T-D021B;SRT;Cartilage)
22 meniscus rgb(178,212,242) (T-D0050;SRT;Tissue) (T-15009;SRT;Meniscus)
23 lymph node rgb(68,172,100) (T-D0050;SRT;Tissue) (T-C4000;SRT;Lymph Node)
24 lymphatic vessel rgb(111,197,131) (T-D0050;SRT;Tissue) (T-C6010;SRT;Lymphatic Vessel)
25 cerebro-spinal fluid rgb(85,188,255) (T-D0080;SRT;Body Substance) (T-A1000;SRT;Cerebrospinal Fluid)
26 bile rgb(0,145,30) (T-D0080;SRT;Body Substance) (T-60650;SRT;Bile)
27 urine rgb(214,230,130) (T-D0080;SRT;Body Substance) (T-70060;SRT;Urine)
28 feces rgb(78,63,0) (T-D0080;SRT;Body Substance) (T-59666;SRT;Feces)
29 gas rgb(218,255,255) (T-D0080;SRT;Body Substance) (C-10080;SRT;Gas)
30 fluid rgb(170,250,250) (T-D0080;SRT;Body Substance) (T-D0070;SRT;Body Fluid)
31 edema rgb(140,224,228) (M-01000;SRT;Morphologically Altered Structure) (M-36300;SRT;Edema)
32 bleeding rgb(188,65,28) (M-01000;SRT;Morphologically Altered Structure) (M-37000;SRT;Hemorrhage)
33 necrosis rgb(216,191,216) (M-01000;SRT;Morphologically Altered Structure) (M-54000;SRT;Necrosis)
34 clot rgb(145,60,66) (M-01000;SRT;Morphologically Altered Structure) (M-35000;SRT;Blood Clot)
35 embolism rgb(150,98,83) (M-01000;SRT;Morphologically Altered Structure) (M-35300;SRT;Embolus)
36 head rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D1105;SRT;Head)
37 central nervous system rgb(244,214,49) (T-D000A;SRT;Anatomical Structure) (T-A0091;SRT;Central Nervous System)
38 brain rgb(250,250,225) (T-D000A;SRT;Anatomical Structure) (T-A0100;SRT;Brain)
39 gray matter of brain rgb(200,200,215) (T-D0050;SRT;Tissue) (T-A2020;SRT;Cerebral Gray Matter)
40 telencephalon rgb(68,131,98) (T-D000A;SRT;Anatomical Structure) (T-A010E;SRT;Telencephalon)
41 cerebral cortex rgb(128,174,128) (T-D000A;SRT;Anatomical Structure) (T-A2021;SRT;Cerebral Cortex)
42 right frontal lobe rgb(83,146,164) (T-D000A;SRT;Anatomical Structure) (T-A2218;SRT;Frontal Lobe) (G-A100;SRT;Right)
43 left frontal lobe rgb(83,146,164) (T-D000A;SRT;Anatomical Structure) (T-A2218;SRT;Frontal Lobe) (G-A101;SRT;Left)
44 right temporal lobe rgb(162,115,105) (T-D000A;SRT;Anatomical Structure) (T-A2513;SRT;Temporal Lobe) (G-A100;SRT;Right)
45 left temporal lobe rgb(162,115,105) (T-D000A;SRT;Anatomical Structure) (T-A2513;SRT;Temporal Lobe) (G-A101;SRT;Left)
46 right parietal lobe rgb(141,93,137) (T-D000A;SRT;Anatomical Structure) (T-A230F;SRT;Parietal Lobe) (G-A100;SRT;Right)
47 left parietal lobe rgb(141,93,137) (T-D000A;SRT;Anatomical Structure) (T-A230F;SRT;Parietal Lobe) (G-A101;SRT;Left)
48 right occipital lobe rgb(182,166,110) (T-D000A;SRT;Anatomical Structure) (T-A240F;SRT;Occipital Lobe) (G-A100;SRT;Right)
49 left occipital lobe rgb(182,166,110) (T-D000A;SRT;Anatomical Structure) (T-A240F;SRT;Occipital Lobe) (G-A101;SRT;Left)
50 right insular lobe rgb(188,135,166) (T-D000A;SRT;Anatomical Structure) (T-A2615;SRT;Insula) (G-A100;SRT;Right)
51 left insular lobe rgb(188,135,166) (T-D000A;SRT;Anatomical Structure) (T-A2615;SRT;Insula) (G-A101;SRT;Left)
52 right limbic lobe rgb(154,150,201) (T-D000A;SRT;Anatomical Structure) (T-A0036;SRT;Limbic Lobe) (G-A100;SRT;Right)
53 left limbic lobe rgb(154,150,201) (T-D000A;SRT;Anatomical Structure) (T-A0036;SRT;Limbic Lobe) (G-A101;SRT;Left)
54 right striatum rgb(177,140,190) (T-D000A;SRT;Anatomical Structure) (T-A3101;SRT;Corpus Striatum) (G-A100;SRT;Right)
55 left striatum rgb(177,140,190) (T-D000A;SRT;Anatomical Structure) (T-A3101;SRT;Corpus Striatum) (G-A101;SRT;Left)
56 right caudate nucleus rgb(30,111,85) (T-D000A;SRT;Anatomical Structure) (T-A3201;SRT;Caudate Nucleus) (G-A100;SRT;Right)
57 left caudate nucleus rgb(30,111,85) (T-D000A;SRT;Anatomical Structure) (T-A3201;SRT;Caudate Nucleus) (G-A101;SRT;Left)
58 right putamen rgb(210,157,166) (T-D000A;SRT;Anatomical Structure) (T-A3401;SRT;Putamen) (G-A100;SRT;Right)
59 left putamen rgb(210,157,166) (T-D000A;SRT;Anatomical Structure) (T-A3401;SRT;Putamen) (G-A101;SRT;Left)
60 right pallidum rgb(48,129,126) (T-D000A;SRT;Anatomical Structure) (T-A3503;SRT;Globus Pallidus) (G-A100;SRT;Right)
61 left pallidum rgb(48,129,126) (T-D000A;SRT;Anatomical Structure) (T-A3503;SRT;Globus Pallidus) (G-A101;SRT;Left)
62 right amygdaloid complex rgb(98,153,112) (T-D000A;SRT;Anatomical Structure) (T-A3231;SRT;Amygdaloid Nucleus) (G-A100;SRT;Right)
63 left amygdaloid complex rgb(98,153,112) (T-D000A;SRT;Anatomical Structure) (T-A3231;SRT;Amygdaloid Nucleus) (G-A101;SRT;Left)
64 diencephalon rgb(69,110,53) (T-D000A;SRT;Anatomical Structure) (T-A0107;SRT;Diencephalon) (G-A100;SRT;Right)
65 thalamus rgb(166,113,137) (T-D000A;SRT;Anatomical Structure) (T-A4001;SRT;Nucleus of Thalamus) (G-A101;SRT;Left)
66 right thalamus rgb(122,101,38) (T-D000A;SRT;Anatomical Structure) (T-A4001;SRT;Nucleus of Thalamus) (G-A100;SRT;Right)
67 left thalamus rgb(122,101,38) (T-D000A;SRT;Anatomical Structure) (T-A4001;SRT;Nucleus of Thalamus) (G-A101;SRT;Left)
68 pineal gland rgb(253,135,192) (T-D000A;SRT;Anatomical Structure) (T-B2003;SRT;Pineal Gland)
69 midbrain rgb(145,92,109) (T-D000A;SRT;Anatomical Structure) (T-A510A;SRT;Midbrain)
70 substantia nigra rgb(46,101,131) (T-D000A;SRT;Anatomical Structure) (T-A5163;SRT;Substantia Nigra)
71 right substantia nigra rgb(0,108,112) (T-D000A;SRT;Anatomical Structure) (T-A5163;SRT;Substantia Nigra) (G-A100;SRT;Right)
72 left substantia nigra rgb(0,108,112) (T-D000A;SRT;Anatomical Structure) (T-A5163;SRT;Substantia Nigra) (G-A101;SRT;Left)
73 cerebral white matter rgb(250,250,225) (T-D000A;SRT;Anatomical Structure) (T-A2032;SRT;Cerebral White Matter)
74 right superior longitudinal fasciculus rgb(127,150,88) (T-D000A;SRT;Anatomical Structure) (T-A2820;SRT;Superior Longitudinal Fasciculus) (G-A100;SRT;Right)
75 left superior longitudinal fasciculus rgb(127,150,88) (T-D000A;SRT;Anatomical Structure) (T-A2820;SRT;Superior Longitudinal Fasciculus) (G-A101;SRT;Left)
76 right inferior longitudinal fasciculus rgb(159,116,163) (T-D000A;SRT;Anatomical Structure) (T-A2851;SRT;Inferior Longitudinal Fasciculus) (G-A100;SRT;Right)
77 left inferior longitudinal fasciculus rgb(159,116,163) (T-D000A;SRT;Anatomical Structure) (T-A2851;SRT;Inferior Longitudinal Fasciculus) (G-A101;SRT;Left)
78 right arcuate fasciculus rgb(125,102,154) (T-D000A;SRT;Anatomical Structure) (276650;FMA;Arcuate Fasciculus) (G-A100;SRT;Right)
79 left arcuate fasciculus rgb(125,102,154) (T-D000A;SRT;Anatomical Structure) (276650;FMA;Arcuate Fasciculus) (G-A101;SRT;Left)
80 right uncinate fasciculus rgb(106,174,155) (T-D000A;SRT;Anatomical Structure) (T-A2831;SRT;Uncinate Fasciculus) (G-A100;SRT;Right)
81 left uncinate fasciculus rgb(106,174,155) (T-D000A;SRT;Anatomical Structure) (T-A2831;SRT;Uncinate Fasciculus) (G-A101;SRT;Left)
82 right cingulum bundle rgb(154,146,83) (T-D000A;SRT;Anatomical Structure) (T-A2841;SRT;Cingulum) (G-A100;SRT;Right)
83 left cingulum bundle rgb(154,146,83) (T-D000A;SRT;Anatomical Structure) (T-A2841;SRT;Cingulum) (G-A101;SRT;Left)
85 right corticospinal tract rgb(201,160,133) (T-D000A;SRT;Anatomical Structure) (T-A709C;SRT;Lateral Corticospinal Tract) (G-A100;SRT;Right)
86 left corticospinal tract rgb(201,160,133) (T-D000A;SRT;Anatomical Structure) (T-A709C;SRT;Lateral Corticospinal Tract) (G-A101;SRT;Left)
87 right optic radiation rgb(78,152,141) (T-D000A;SRT;Anatomical Structure) (T-A2881;SRT;Optic Radiation) (G-A100;SRT;Right)
88 left optic radiation rgb(78,152,141) (T-D000A;SRT;Anatomical Structure) (T-A2881;SRT;Optic Radiation) (G-A101;SRT;Left)
89 right medial lemniscus rgb(174,140,103) (T-D000A;SRT;Anatomical Structure) (T-A5273; SRT;Medial Lemniscus) (G-A100;SRT;Right)
90 left medial lemniscus rgb(174,140,103) (T-D000A;SRT;Anatomical Structure) (T-A5273; SRT;Medial Lemniscus) (G-A101;SRT;Left)
91 right superior cerebellar peduncle rgb(139,126,177) (T-D000A;SRT;Anatomical Structure) (T-A6621; SRT; superior cerebellar peduncle) (G-A100;SRT;Right)
92 left superior cerebellar peduncle rgb(139,126,177) (T-D000A;SRT;Anatomical Structure) (T-A6621; SRT; superior cerebellar peduncle) (G-A101;SRT;Left)
93 right middle cerebellar peduncle rgb(148,120,72) (T-D000A;SRT;Anatomical Structure) (T-A6631;SRT;middle cerebellar peduncle) (G-A100;SRT;Right)
94 left middle cerebellar peduncle rgb(148,120,72) (T-D000A;SRT;Anatomical Structure) (T-A6631;SRT;middle cerebellar peduncle) (G-A101;SRT;Left)
95 right inferior cerebellar peduncle rgb(186,135,135) (T-D000A;SRT;Anatomical Structure) (T-A6641;SRT;inferior cerebellar peduncle ) (G-A100;SRT;Right)
96 left inferior cerebellar peduncle rgb(186,135,135) (T-D000A;SRT;Anatomical Structure) (T-A6641;SRT;inferior cerebellar peduncle ) (G-A101;SRT;Left)
97 optic chiasm rgb(99,106,24) (T-D000A;SRT;Anatomical Structure) (T-A800B;SRT;Optic Chiasm)
98 right optic tract rgb(156,171,108) (T-D000A;SRT;Anatomical Structure) (T-A807B1;SRT;optic tract) (G-A100;SRT;Right)
99 left optic tract rgb(156,171,108) (T-D000A;SRT;Anatomical Structure) (T-A807B1;SRT;optic tract) (G-A101;SRT;Left)
100 right fornix rgb(64,123,147) (T-D000A;SRT;Anatomical Structure) (T-A2978;SRT;cerebral fornix) (G-A100;SRT;Right)
101 left fornix rgb(64,123,147) (T-D000A;SRT;Anatomical Structure) (T-A2978;SRT;cerebral fornix) (G-A101;SRT;Left)
103 corpus callosum rgb(97,113,158) (T-D000A;SRT;Anatomical Structure) (T-A2701;SRT;corpus callosum
104 posterior commissure rgb(126,161,197) (T-D000A;SRT;Anatomical Structure) (T-A4904;SRT;Posterior Cerebral Commissure)
105 cerebellar white matter rgb(194,195,164) (T-D000A;SRT;Anatomical Structure) (T-A6080;SRT;Cerebellar White Matter)
106 CSF space rgb(85,188,255) (T-D000A;SRT;Anatomical Structure) (T-A0109;SRT;Brain Cerebrospinal Fluid Pathway)
107 ventricles of brain rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1603;SRT;Ventricle of Brain)
108 right lateral ventricle rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1651;SRT;lateral ventricle) (G-A100;SRT;Right)
109 left lateral ventricle rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1651;SRT;lateral ventricle) (G-A101;SRT;Left)
110 right third ventricle rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1741;SRT;third ventricle) (G-A100;SRT;Right)
111 left third ventricle rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1741;SRT;third ventricle) (G-A101;SRT;Left)
112 cerebral aqueduct rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A0106;SRT;cerebral aqueduct)
113 fourth ventricle rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1821;SRT;fourth ventricle)
114 subarachnoid space rgb(88,106,215) (T-D000A;SRT;Anatomical Structure) (T-A1503;SRT;subarachnoid space)
115 spinal cord rgb(244,214,49) (T-D000A;SRT;Anatomical Structure) (T-A7013;SRT;spinal cord)
116 gray matter of spinal cord rgb(200,200,215) (T-D000A;SRT;Anatomical Structure) (T-A7020;SRT;Spinal Cord Gray Matter)
117 white matter of spinal cord rgb(250,250,225) (T-D000A;SRT;Anatomical Structure) (T-A7070;SRT;Spinal Cord White Matter)
119 pituitary gland rgb(57,157,110) (T-D000A;SRT;Anatomical Structure) (T-B0007;SRT;pituitary gland)
120 adenohypophysis rgb(60,143,83) (T-D000A;SRT;Anatomical Structure) (T-B1101;SRT;adenohypophysis)
121 neurohypophysis rgb(92,162,109) (T-D000A;SRT;Anatomical Structure) (T-B1201;SRT;neurohypophysis)
122 meninges rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-A1110;SRT;Meninges)
123 dura mater rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-A1121;SRT;dura mater
124 arachnoid rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-A1223;SRT;arachnoid)
125 pia mater rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-A1283;SRT.pia mater)
126 muscles of head rgb(201,121,77) (T-D000A;SRT;Anatomical Structure) (T-13103;SRT;Entire skeletal muscle of head)
127 salivary glands rgb(70,163,117) (T-D000A;SRT;Anatomical Structure) (T-61004;SRT;salivary gland)
128 lips rgb(188,91,95) (T-D000A;SRT;Anatomical Structure) (T-52004;SRT;lip)
129 nose rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-21003;SRT;nose)
130 tongue rgb(166,84,94) (T-D000A;SRT;Anatomical Structure) (T-5300D;SRT;tongue)
131 soft palate rgb(182,105,107) (T-D000A;SRT;Anatomical Structure) (T-51127;SRT;soft palate)
132 right inner ear rgb(229,147,118) (T-D000A;SRT;Anatomical Structure) (T-AB707;SRT;inner ear ) (G-A100;SRT;Right)
133 left inner ear rgb(229,147,118) (T-D000A;SRT;Anatomical Structure) (T-AB707;SRT;inner ear ) (G-A101;SRT;Left)
134 right external ear rgb(174,122,90) (T-D000A;SRT;Anatomical Structure) (T-AB10B;SRT;external ear ) (G-A100;SRT;Right)
135 left external ear rgb(174,122,90) (T-D000A;SRT;Anatomical Structure) (T-AB10B;SRT;external ear ) (G-A101;SRT;Left)
136 right middle ear rgb(201,112,73) (T-D000A;SRT;Anatomical Structure) (T-AB306;SRT;middle ear) (G-A100;SRT;Right)
137 left middle ear rgb(201,112,73) (T-D000A;SRT;Anatomical Structure) (T-AB306;SRT;middle ear) (G-A101;SRT;Left)
138 right eyeball rgb(194,142,0) (T-D000A;SRT;Anatomical Structure) (T-AA636;SRT;Fundus of Eye) (G-A100;SRT;Right)
139 left eyeball rgb(194,142,0) (T-D000A;SRT;Anatomical Structure) (T-AA636;SRT;Fundus of Eye) (G-A101;SRT;Left)
140 skull rgb(241,213,144) (T-D000A;SRT;Anatomical Structure) (T-11100;SRT;Skull)
141 right frontal bone rgb(203,179,77) (T-D000A;SRT;Anatomical Structure) (T-111C6;SRT;frontal bone) (G-A100;SRT;Right)
142 left frontal bone rgb(203,179,77) (T-D000A;SRT;Anatomical Structure) (T-111C6;SRT;frontal bone) (G-A101;SRT;Left)
143 right parietal bone rgb(229,204,109) (T-D000A;SRT;Anatomical Structure) (T-111C7;SRT;parietal bone ) (G-A100;SRT;Right)
144 left parietal bone rgb(229,204,109) (T-D000A;SRT;Anatomical Structure) (T-111C7;SRT;parietal bone ) (G-A101;SRT;Left)
145 right temporal bone rgb(255,243,152) (T-D000A;SRT;Anatomical Structure) (T-111C8;SRT;temporal bone) (G-A100;SRT;Right)
146 left temporal bone rgb(255,243,152) (T-D000A;SRT;Anatomical Structure) (T-111C8;SRT;temporal bone) (G-A101;SRT;Left)
147 right sphenoid bone rgb(209,185,85) (T-D000A;SRT;Anatomical Structure) (T-111B9;SRT;sphenoid bone) (G-A100;SRT;Right)
148 left sphenoid bone rgb(209,185,85) (T-D000A;SRT;Anatomical Structure) (T-111B9;SRT;sphenoid bone) (G-A101;SRT;Left)
149 right ethmoid bone rgb(248,223,131) (T-D000A;SRT;Anatomical Structure) (T-111B7;SRT;ethmoid bone) (G-A100;SRT;Right)
150 left ethmoid bone rgb(248,223,131) (T-D000A;SRT;Anatomical Structure) (T-111B7;SRT;ethmoid bone) (G-A101;SRT;Left)
151 occipital bone rgb(255,230,138) (T-D000A;SRT;Anatomical Structure) (T-111C9;SRT;occipital bone )
152 maxilla rgb(196,172,68) (T-D000A;SRT;Anatomical Structure) (T-111D4;SRT;maxilla)
153 right zygomatic bone rgb(255,255,167) (T-D000A;SRT;Anatomical Structure) (T-111BE;SRT;zygoma) (G-A100;SRT;Right)
154 right lacrimal bone rgb(255,250,160) (T-D000A;SRT;Anatomical Structure) (T-111B8;SRT;lacrimal bone) (G-A100;SRT;Right)
155 vomer bone rgb(255,237,145) (T-D000A;SRT;Anatomical Structure) (T-21349;SRT;vomer bone)
156 right palatine bone rgb(242,217,123) (T-D000A;SRT;Anatomical Structure) (T-111A8;SRT;palatine bone) (G-A100;SRT;Right)
157 left palatine bone rgb(242,217,123) (T-D000A;SRT;Anatomical Structure) (T-111A8;SRT;palatine bone) (G-A101;SRT;Left)
158 mandible rgb(222,198,101) (T-D000A;SRT;Anatomical Structure) (T-111D3;SRT;mandible )
159 neck rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D1607;SRT.neck )
160 muscles of neck rgb(213,124,109) (T-D000A;SRT;Anatomical Structure) (T-13311;SRT;skeletal muscle of neck)
161 pharynx rgb(184,105,108) (T-D000A;SRT;Anatomical Structure) (T-55002;SRT;pharynx )
162 larynx rgb(150,208,243) (T-D000A;SRT;Anatomical Structure) (T-2410C;SRT;larynx)
163 thyroid gland rgb(62,162,114) (T-D000A;SRT;Anatomical Structure) (T-B0004;SRT;thyroid gland )
164 right parathyroid glands rgb(62,162,114) (T-D000A;SRT;Anatomical Structure) (T-B0006;SRT;parathyroid gland ) (G-A100;SRT;Right)
165 left parathyroid glands rgb(62,162,114) (T-D000A;SRT;Anatomical Structure) (T-B0006;SRT;parathyroid gland ) (G-A101;SRT;Left)
166 skeleton of neck rgb(242,206,142) (T-D000A;SRT;Anatomical Structure) (T-D006D;SRT;bone structure of head and/or neck)
167 hyoid bone rgb(250,210,139) (T-D000A;SRT;Anatomical Structure) (T-111BF;SRT;hyoid bone)
168 cervical vertebral column rgb(255,255,207) (T-D000A;SRT;Anatomical Structure) (T-116E0;SRT;Entire cervical vertebra)
169 thorax rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D3003;SRT;thorax)
170 trachea rgb(182,228,255) (T-D000A;SRT;Anatomical Structure) (T-2500A;SRT;trachea)
171 bronchi rgb(175,216,244) (T-D000A;SRT;Anatomical Structure) (T-26000;SRT;Bronchi)
172 right lung rgb(197,165,145) (T-D000A;SRT;Anatomical Structure) (T-28000;SRT;Lung) (G-A100;SRT;Right)
173 left lung rgb(197,165,145) (T-D000A;SRT;Anatomical Structure) (T-28000;SRT;Lung) (G-A101;SRT;Left)
174 superior lobe of right lung rgb(172,138,115) (T-D000A;SRT;Anatomical Structure) (T-28821;SRT;Upper Lobe of Lung) (G-A100;SRT;Right)
175 superior lobe of left lung rgb(172,138,115) (T-D000A;SRT;Anatomical Structure) (T-28821;SRT;Upper Lobe of Lung) (G-A101;SRT;Left)
176 middle lobe of right lung rgb(202,164,140) (T-D000A;SRT;Anatomical Structure) (T-28301;SRT;MIddle Lobe of Right Lung)
177 inferior lobe of right lung rgb(224,186,162) (T-D000A;SRT;Anatomical Structure) (T-28831;SRT;Lower Lobe of Lung) (G-A100;SRT;Right)
178 inferior lobe of left lung rgb(224,186,162) (T-D000A;SRT;Anatomical Structure) (T-28831;SRT;Lower Lobe of Lung) (G-A101;SRT;Left)
179 pleura rgb(255,245,217) (T-D000A;SRT;Anatomical Structure) (T-29001;SRT;pleura)
180 heart rgb(206,110,84) (T-D000A;SRT;Anatomical Structure) (T-32000;SRT;Heart)
181 right atrium rgb(210,115,89) (T-D000A;SRT;Anatomical Structure) (T-32101;SRT;atrium)
182 left atrium rgb(203,108,81) (T-D000A;SRT;Anatomical Structure) (T-32101;SRT;atrium)
183 atrial septum rgb(233,138,112) (T-D000A;SRT;Anatomical Structure) (T-32158;SRTinteratrial septum)
184 ventricular septum rgb(195,100,73) (T-D000A;SRT;Anatomical Structure) (T-3241C;SRT;interventricular septum)
185 right ventricle of heart rgb(181,85,57) (T-D000A;SRT;Anatomical Structure) (T-32500;SRT;Right Ventricle)
186 left ventricle of heart rgb(152,55,13) (T-D000A;SRT;Anatomical Structure) (T-32600;SRT;Left Ventricle)
187 mitral valve rgb(159,63,27) (T-D000A;SRT;Anatomical Structure) (T-35301;SRT;mitral valve)
188 tricuspid valve rgb(166,70,38) (T-D000A;SRT;Anatomical Structure) (T-35102;SRT;tricuspid valve)
189 aortic valve rgb(218,123,97) (T-D000A;SRT;Anatomical Structure) (T-35401;SRT;aortic valve
190 pulmonary valve rgb(225,130,104) (T-D000A;SRT;Anatomical Structure) (T-35201;SRT;pulmonary valve)
191 aorta rgb(224,97,76) (T-D000A;SRT;Anatomical Structure) (T-42000;SRT;Aorta)
192 pericardium rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-39004;SRT;pericardium)
193 pericardial cavity rgb(184,122,154) (T-D000A;SRT;Anatomical Structure) (T-39051;SRT;pericardial cavity)
194 esophagus rgb(211,171,143) (T-D000A;SRT;Anatomical Structure) (T-56000;SRT;Esophagus)
195 thymus rgb(47,150,103) (T-D000A;SRT;Anatomical Structure) (T-C8000;SRT;Thymus Gland)
196 mediastinum rgb(255,244,209) (T-D000A;SRT;Anatomical Structure) (T-D3300;SRT;Mediastinum)
197 skin of thoracic wall rgb(173,121,88) (T-D000A;SRT;Anatomical Structure) (T-0243C;SRT;skin of chest)
198 muscles of thoracic wall rgb(188,95,76) (T-D000A;SRT;Anatomical Structure) (T-14104;SRT;skeletal muscle of thorax)
199 skeleton of thorax rgb(255,239,172) (T-D000A;SRT;Anatomical Structure) (T-110E9;SRT;bone organ of thorax)
200 thoracic vertebral column rgb(226,202,134) (T-D000A;SRT;Anatomical Structure) (T-1171F;SRT;thoracic vertebral column)
201 ribs rgb(253,232,158) (T-D000A;SRT;Anatomical Structure) (T-11300;SRT;Rib)
202 sternum rgb(244,217,154) (T-D000A;SRT;Anatomical Structure) (T-11210;SRT;Sternum)
203 right clavicle rgb(205,179,108) (T-D000A;SRT;Anatomical Structure) (T-12310;SRT;Clavicle) (G-A100;SRT;Right)
204 left clavicle rgb(205,179,108) (T-D000A;SRT;Anatomical Structure) (T-12310;SRT;Clavicle) (G-A101;SRT;Left)
205 abdominal cavity rgb(186,124,161) (T-D000A;SRT;Anatomical Structure) (T-D401A;SRT;abdominal cavity)
206 abdomen rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D4000;SRT;Abdomen)
207 peritoneum rgb(255,255,220) (T-D000A;SRT;Anatomical Structure) (T-D4403;SRT;peritoneum)
208 omentum rgb(234,234,194) (T-D000A;SRT;Anatomical Structure) (T-D4601;SRT;omentum)
209 peritoneal cavity rgb(204,142,178) (T-D000A;SRT;Anatomical Structure) (T-D4447;SRT;peritoneal cavity)
210 retroperitoneal space rgb(180,119,153) (T-D000A;SRT;Anatomical Structure) (T-D4902;SRT;retroperitoneal space)
211 stomach rgb(216,132,105) (T-D000A;SRT;Anatomical Structure) (T-57001;SRT;stomach)
212 duodenum rgb(255,253,229) (T-D000A;SRT;Anatomical Structure) (T-58206;SRT;duodenum)
213 small bowel rgb(205,167,142) (T-D000A;SRT;Anatomical Structure) (T-D4033;SRT;Small Intestine)
214 colon rgb(204,168,143) (T-D000A;SRT;Anatomical Structure) (T-59302;SRT;Colon)
215 anus rgb(255,224,199) (T-D000A;SRT;Anatomical Structure) (T-59902;SRT;Anus)
216 liver rgb(221,130,101) (T-D000A;SRT;Anatomical Structure) (T-62000;SRT;Liver)
217 biliary tree rgb(0,145,30) (T-D000A;SRT;Anatomical Structure) (T-60613;SRT;Bile Duct)
218 gallbladder rgb(139,150,98) (T-D000A;SRT;Anatomical Structure) (T-63002;SRT;gallbladder)
219 pancreas rgb(249,180,111) (T-D000A;SRT;Anatomical Structure) (T-D4034;SRT;pancreas)
220 spleen rgb(157,108,162) (T-D000A;SRT;Anatomical Structure) (T-C3000;SRT;Spleen)
221 urinary system rgb(203,136,116) (T-D000A;SRT;Anatomical Structure) (T-70002;SRT;urinary system)
222 right kidney rgb(185,102,83) (T-D000A;SRT;Anatomical Structure) (T-71000;SRT;Kidney) (G-A100;SRT;Right)
223 left kidney rgb(185,102,83) (T-D000A;SRT;Anatomical Structure) (T-71000;SRT;Kidney) (G-A101;SRT;Left)
224 right ureter rgb(247,182,164) (T-D000A;SRT;Anatomical Structure) (T-73005;SRT;ureter)
225 left ureter rgb(247,182,164) (T-D000A;SRT;Anatomical Structure) (T-73005;SRT;ureter)
226 urinary bladder rgb(222,154,132) (T-D000A;SRT;Anatomical Structure) (T-74000;SRT;Bladder)
227 urethra rgb(124,186,223) (T-D000A;SRT;Anatomical Structure) (T-75001;SRT;urethra )
228 right adrenal gland rgb(249,186,150) (T-D000A;SRT;Anatomical Structure) (T-B3000;SRT;Adrenal Gland) (G-A100;SRT;Right)
229 left adrenal gland rgb(249,186,150) (T-D000A;SRT;Anatomical Structure) (T-B3000;SRT;Adrenal Gland) (G-A101;SRT;Left)
230 female internal genitalia rgb(244,170,147) (T-D000A;SRT;Anatomical Structure) (T-80021;SRT;female internal genitalia)
231 uterus rgb(255,181,158) (T-D000A;SRT;Anatomical Structure) (T-83000;SRT;Uterus)
232 right fallopian tube rgb(255,190,165) (T-D000A;SRT;Anatomical Structure) (T-D6101;SRT;fallopian tube)
233 left fallopian tube rgb(227,153,130) (T-D000A;SRT;Anatomical Structure) (T-D6101;SRT;fallopian tube)
234 right ovary rgb(213,141,113) (T-D000A;SRT;Anatomical Structure) (T-87000;SRT;Ovary) (G-A100;SRT;Right)
235 left ovary rgb(213,141,113) (T-D000A;SRT;Anatomical Structure) (T-87000;SRT;Ovary) (G-A101;SRT;Left)
236 vagina rgb(193,123,103) (T-D000A;SRT;Anatomical Structure) (T-82003;SRT;vagina)
237 male internal genitalia rgb(216,146,127) (T-D000A;SRT;Anatomical Structure) (T-90021;SRT;male internal genitalia)
238 prostate rgb(230,158,140) (T-D000A;SRT;Anatomical Structure) (T-92000;SRT;Prostate)
239 right seminal vesicle rgb(245,172,147) (T-D000A;SRT;Anatomical Structure) (T-93000;SRT;Seminal Vesicle) (G-A100;SRT;Right)
240 left seminal vesicle rgb(245,172,147) (T-D000A;SRT;Anatomical Structure) (T-93000;SRT;Seminal Vesicle) (G-A101;SRT;Left)
241 right deferent duct rgb(241,172,151) (T-D000A;SRT;Anatomical Structure) (T-96004;SRT;Vas Deferens) (G-A100;SRT;Right)
242 left deferent duct rgb(241,172,151) (T-D000A;SRT;Anatomical Structure) (T-96004;SRT;Vas Deferens) (G-A101;SRT;Left)
243 skin of abdominal wall rgb(177,124,92) (T-D000A;SRT;Anatomical Structure) (T-02489;SRT;Entire skin of abdomen)
244 muscles of abdominal wall rgb(171,85,68) (T-D000A;SRT;Anatomical Structure) (T-14205;SRT;Entire abdominal wall muscle)
246 lumbar vertebral column rgb(212,188,102) (T-D000A;SRT;Anatomical Structure) (T-1190E;SRT;lumbar vertebral column
247 female external genitalia rgb(185,135,134) (T-D000A;SRT;Anatomical Structure) (T-80011;SRT;female external genitalia)
248 male external genitalia rgb(185,135,134) (T-D000A;SRT;Anatomical Structure) (T-90012;SRT;Entire male external genitalia )
249 skeleton of upper limb rgb(198,175,125) (T-D000A;SRT;Anatomical Structure) (T-124A6;SRT;Entire bone of upper extremity)
250 muscles of upper limb rgb(194,98,79) (T-D000A;SRT;Anatomical Structure) (T-1360E;SRT;Entire skeletal muscle of upper limb)
251 right upper limb rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8004;SRT;upper limb) (G-A100;SRT;Right)
252 left upper limb rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8004;SRT;upper limb) (G-A101;SRT;Left)
253 right shoulder rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D067C;SRT;shoulder region) (G-A100;SRT;Right)
254 left shoulder rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D067C;SRT;shoulder region) (G-A101;SRT;Left)
255 right arm rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D820B;SRT;upper arm) (G-A100;SRT;Right)
256 left arm rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D820B;SRT;upper arm) (G-A101;SRT;Left)
257 right elbow rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D06CA;SRT;elbow) (G-A100;SRT;Right)
258 left elbow rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D06CA;SRT;elbow) (G-A101;SRT;Left)
259 right forearm rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8508;SRT;forearm) (G-A100;SRT;Right)
260 left forearm rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8508;SRT;forearm) (G-A101;SRT;Left)
261 right wrist rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D0787;SRT;wrist region) (G-A100;SRT;Right)
262 left wrist rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D0787;SRT;wrist region) (G-A101;SRT;Left)
263 right hand rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8701;SRT;hand) (G-A100;SRT;Right)
264 left hand rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D8701;SRT;hand) (G-A101;SRT;Left)
265 skeleton of lower limb rgb(255,238,170) (T-D000A;SRT;Anatomical Structure) (T-127BF;SRT;Entire bone of lower extremity)
266 muscles of lower limb rgb(206,111,93) (T-D000A;SRT;Anatomical Structure) (T-1466E;SRT;Entire skeletal muscle of lower limb)
267 right lower limb rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D903B;SRT;lower limb) (G-A100;SRT;Right)
268 left lower limb rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D903B;SRT;lower limb) (G-A101;SRT;Left)
269 right hip rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D2503;SRT;hip region) (G-A100;SRT;Right)
270 left hip rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D2503;SRT;hip region) (G-A101;SRT;Left)
271 right thigh rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D9106.SRT;thigh) (G-A100;SRT;Right)
272 left thigh rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D9106.SRT;thigh) (G-A101;SRT;Left)
273 right knee rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D03BA;SRT;knee region) (G-A100;SRT;Right)
274 left knee rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D03BA;SRT;knee region) (G-A101;SRT;Left)
275 right leg rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D940B;SRT;lower leg; from knee to ankle) (G-A100;SRT;Right)
276 left leg rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D940B;SRT;lower leg; from knee to ankle) (G-A101;SRT;Left)
277 right foot rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D9706;SRT;foot) (G-A100;SRT;Right)
278 left foot rgb(177,122,101) (T-D000A;SRT;Anatomical Structure) (T-D9706;SRT;foot) (G-A101;SRT;Left)
279 peripheral nervous system rgb(216,186,0) (T-D000A;SRT;Anatomical Structure) (T-A0141;SRT;peripheral nervous system)
280 autonomic nerve rgb(255,226,77) (T-D000A;SRT;Anatomical Structure) (T-A9606;SRT;autonomic nerve)
281 sympathetic trunk rgb(255,243,106) (T-D000A;SRT;Anatomical Structure) (T-A9637;SRT;sympathetic trunk)
282 cranial nerves rgb(255,234,92) (T-D000A;SRT;Anatomical Structure) (T-A800A;SRT;cranial nerve)
283 vagus nerve rgb(240,210,35) (T-D000A;SRT;Anatomical Structure) (T-A8008;SRT;vagus nerve)
284 peripheral nerve rgb(224,194,0) (T-D000A;SRT;Anatomical Structure) (T-A051B;SRT;peripheral nerve)
285 circulatory system rgb(213,99,79) (T-D000A;SRT;Anatomical Structure) (T-30001;SRT;Cardiovascular system)
286 systemic arterial system rgb(217,102,81) (T-D000A;SRT;Anatomical Structure) (T-4105E;SRT;Systemic arterial structure)
287 systemic venous system rgb(0,147,202) (T-D000A;SRT;Anatomical Structure) (T-4000B;SRT;Entire systemic vein)
288 pulmonary arterial system rgb(0,122,171) (T-D000A;SRT;Anatomical Structure) (T-44012;SRT;Entire pulmonary artery)
289 pulmonary venous system rgb(186,77,64) (T-D000A;SRT;Anatomical Structure) (T-48500;SRT;Entire pulmonary vein)
290 lymphatic system rgb(111,197,131) (T-D000A;SRT;Anatomical Structure) (T-C6004;SRT;lymphatic system)
291 needle rgb(240,255,30) (A-00004;SRT;Physical Object) (A-30360;SRT;Needle)
309 cyst rgb(205,205,100) (M-01000;SRT;Morphologically Altered Structure) (M-3340A;SRT;Cyst)


Similar Modules

References

Information for Developers