Documentation/Nightly/Extensions/LesionSimulator

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Introduction and Acknowledgements

This work was partially funded by CAPES and CNPq, a Brazillian Agencies. Information on CAPES can be obtained on the CAPES website and CNPq website. Author: Antonio Carlos da S. Senra Filho, CSIM Laboratory (University of Sao Paulo, Department of Computing and Mathematics) Contact: Antonio Carlos da S. Senra Filho <email>acsenrafilho@usp.br</email>

CSIM Laboratory   University of Sao Paulo   CNPq Brazil   CAPES Brazil

Extension Description

This extension offer a set of tools for brain lesion simulation, based on MRI images. At moment, the module MS Lesion Simulator is available, where it can simulates both baseline scan lesion volumes (given a lesion load) and longitudinal image simulations. The general procedure describe in the MS Lesion Simulator is described in the original paper.

Modules

• MS Baseline Lesion Simulator
• MS Longitudinal Lesion Simulator

Use Cases

Most frequently used for these scenarios:

• Use Case 1: Simulate different anatomical/clinical MS lesions patterns on healthy individuals MRI images
  • In the baseline scan approach, it is offered a simulation procedure where a determined lesion load is reconstructed using a subject specific anatomical features, resulting in a realistic MS lesion load simulation.
• Use Case 2: Simulate longitudinal MS lesion progression on clinical healthy individuals MRI images

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Similar Extensions

N/A

References

• paper

Information for Developers

Repositories:

• Source code: GitHub repository
• Issue tracker: open issues and enhancement requests