Difference between revisions of "Documentation/Nightly/Extensions/LesionSimulator"
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Revision as of 19:33, 12 December 2016
Home < Documentation < Nightly < Extensions < LesionSimulator
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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This work was partially funded by CAPES and CNPq, a Brazillian Agencies. Information on CAPES can be obtained on the CAPES website and CNPq website. | |||||||||
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Extension Description
This extension offer a set of tools for brain lesion simulation, based on MRI images. At moment, the module MS Lesion Simulator is available, where it can simulates both baseline scan lesion volumes (given a lesion load) and longitudinal image simulations. The general procedure describe in the MS Lesion Simulator is described in the original paper.
Modules
Use Cases
Most frequently used for these scenarios:
- Use Case 1: Simulate different anatomical/clinical MS lesions patterns on healthy individuals MRI images
- In the baseline scan approach, it is offered a simulation procedure where a determined lesion load is reconstructed using a subject specific anatomical features, resulting in a realistic MS lesion load simulation.
- Use Case 2: Simulate longitudinal MS lesion progression on clinical healthy individuals MRI images
MS lesion simulation with 2mL lesion load
MS lesion simulation with 5mL lesion load
MS lesion simulation with 40mL lesion load
A 3D reconstruction of 2mL, 5mL and 40mL lesion loads showing that each lesion pattern is independent of each other
T1 weighted MRI brain in axial orientation (provided by the ICBM-MNI152 non linear brain template)
The same MNI152 template with 40mL lesion load simulated lesions (axial orientation)
T1 weighted MRI brain in sagittal orientation (provided by the ICBM-MNI152 non linear brain template)
The same MNI152 template with 40mL lesion load simulated lesions (sagittal orientation)
Similar Extensions
N/A
References
- paper
Information for Developers
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Section under construction. |
Repositories:
- Source code: GitHub repository
- Issue tracker: open issues and enhancement requests
