Difference between revisions of "Documentation/Nightly/Extensions/Igyne"

From Slicer Wiki
Jump to: navigation, search
Line 28: Line 28:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|Use Cases}}
 
{{documentation/{{documentation/version}}/extension-section|Use Cases}}
−
[http://plastimatch.org/data_sources.html Sample data] to use with modules.
+
[https://github.com/xjchen/igyne/tree/master/scene%20for%20template%20and%20obturator Sample data] to use with modules.
 
<gallery widths="200px" perrow="4">
 
<gallery widths="200px" perrow="4">
−
Image:plastimatch_dicomrt_ss.png|DICOM-RT Structure Set
+
 
−
Image:plastimatch_dicomrt_dose.png|DICOM-RT Dose
 
−
Image:plastimatch_image_1.png|Before Registration
 
−
Image:plastimatch_image_2.png|After Registration
 
−
Image:before_reg.png|Before Registration
 
−
Image:after_reg.png|After Registration
 
 
</gallery>
 
</gallery>
  
Line 56: Line 51:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|References}}
 
{{documentation/{{documentation/version}}/extension-section|References}}
−
* G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.  
+
* http://www.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:iGyne
−
* V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
+
* Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur. "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.
−
* Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
+
 
−
* G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
 
−
* N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Revision as of 20:13, 30 August 2012

Home < Documentation < Nightly < Extensions < Igyne

Introduction and Acknowledgements

Author: Xiaojun Chen
Contributors: Xiaojun Chen,Jan Egger,Tina Kapur,Akila N. Viswanathan(BWH), Steve Pieper(Isomics)
Contact: Xiaojun Chen, <email>xiaojun@bwh.harvard.edu</email>
Website: https://github.com/xjchen/igyne
License: Slicer license


Extension Description

Igyne is an open source software for MR-Guided Interstitial Gynecologic Brachytherapy. It enables on-time processing of the intra-operative MRI data via a DICOM connection to the scanner followed by a multi-stage registration of CAD models of the template and the obturator to the patient images. This allows the virtual placement of interstitial needles during the intervention to assist the physician positioning decision.Software features include:

  • Loading of Applicator CAD models and MR images
  • Initial registration of CAD model of the Template to MR images
  • Registration Refinement
  • Visualization of Registration
  • Needle Selection and Display of Virtual Needles relative to Applicator CAD models and Tumor Segmentation

Modules

Use Cases

Sample data to use with modules.

Tutorials

Similar Extensions

N/A

References

  • http://www.na-mic.org/Wiki/index.php/2012_Summer_Project_Week:iGyne
  • Xiaojun Chen, Jan Egger, Akila Viswanathan, Neha Agrawal, William Wells, Ron Kikinis, Clare Tempany, Ferenc Jolesz and Tina Kapur. "Image Processing for MR-guided Gynecologic Interstitial Brachytherapy in AMIGO", The 9th Interventional MRI Symposium. September 22-23, 2012.


Information for Developers

Work in progress
 Section under construction.
Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Igyne&oldid=28209"