Difference between revisions of "Documentation/Nightly/2016-User-Manual-Discussion"

From Slicer Wiki
Jump to: navigation, search
 
(22 intermediate revisions by the same user not shown)
Line 3: Line 3:
 
<!--{{documentation/versionlist}}-->  
 
<!--{{documentation/versionlist}}-->  
  
 
+
3D Slicer
 
 
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
|-
 
|-
Line 13: Line 12:
 
|valign="top"|
 
|valign="top"|
 
----
 
----
<span style="color: #555555; font-size: 18px; font-weight: bold;">3D Slicer</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
 
* Analysis and visualization of medical images
 
* Analysis and visualization of medical images
Line 22: Line 21:
 
|valign="top"|
 
|valign="top"|
 
----
 
----
<span style="color: #555555; font-size: 18px; font-weight: bold;">Highlights</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
 
* Designed for biomedical research
 
* Designed for biomedical research
Line 28: Line 27:
 
* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
 
* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
 
|}
 
|}
 
 
 
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
|-
 
|-
Line 42: Line 38:
 
----
 
----
 
* [[ New_users|Getting started]]
 
* [[ New_users|Getting started]]
* [[ Documentation/{{documentation/version}}/Training|Learn how to use 3D Slicer]]
+
* [[ Documentation/{{documentation/version}}/Training|Self-Training: Tutorials and sample data]]
 
* [[FAQ|Frequently asked questions]]
 
* [[FAQ|Frequently asked questions]]
 
* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
 
* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
* [[Documentation/{{documentation/version}}/Report_a_problem|Report a problem or request a feature ]]
+
* How to [[CitingSlicer|cite 3D Slicer and individual 3D Slicer Modules]]  
* How to [[CitingSlicer|Cite 3D Slicer and individual 3D Slicer Modules]]  
 
 
----
 
----
 
----
 
----
Line 57: Line 52:
 
* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
 
* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
 
* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
 
* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
* [[Link to portal page about loading data|Loading]], [[Saving data]] and [[listing of supported data formats]].
+
*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]].
 +
<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
 +
 
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 +
----
 +
* [http://slicerdmri.github.io/  Interactive tractography using diffusion MRI data]
 +
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]
 +
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]
 +
 
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
Line 65: Line 69:
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
----
 
----
 
 
{| class="wikitable"
 
{| class="wikitable"
|  
+
| [[image:Load-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/LoadingData| To add data, just drag and drop]]
| Data IO and Organization
+
| [[image:Save-Icon-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/SavingData| To save data, select the save icon]]
 
|-
 
|-
| [[Image:2016-07-03-Interactive-Editor-Icon.png|60 px| link=Link to Editor module |Interactive segmentation]]   
+
| [[Image:2016-07-03-Interactive-Editor-Icon.png|100 px| link=Link to Editor module |Interactive segmentation]]   
| Interactive and Automated Segmentation
+
| [[image:Editor-panel.png|100px|link=https://www.youtube.com/watch?v=MKLWzD0PiIc| Interactive Segmentation (at 14 minutes)]]
 
|-
 
|-
| [[Image:2016-07-03-Transforms-Module-Icon.png|60 px| Link= Link to Transforms module |Interactive]]
+
| [[Image:2016-07-03-Transforms-Module-Icon.png|100 px|link=Documentation/Nightly/Modules/Transforms|Interactive registration]]
| Interactive and Automated Registration
+
| [[Image:Grid3dVolume.png|100px|link=https://www.youtube.com/watch?v=kZUAfR0mqqI| Demo of the transforms display feature]]
 
|-
 
|-
| [[Image:SlicerRegistrationLibrary_Ad.png|80px|link=Documentation/Nightly/Registration/RegistrationLibrary]]
+
| [[Image:SlicerRegistrationLibrary_Ad.png|100px|link=Documentation/Nightly/Registration/RegistrationLibrary|Registration library]]
| Registration library
+
| [[Image:VolumeRendering-CTA-2011.png|100 px|link=Documentation/Nightly/Modules/VolumeRendering | Volume rendering]]
 
|-
 
|-
| [[Image:2016-07-03-Volume-Rendering-Icon.png|60 px| Link= Link to Volume rendering module | Volume rendering]]  
+
| [[Image:Fiducial-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Markups| Fiducials]]  
| Volume rendering
+
| [[Image:Ruler-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Annotations| Linear Measurements]]
|-
 
| [[Link to the fiducials page | Fiducials]] and [[link to the linear measurements page| Linear Measurements]]
 
| Measurements and Quantification
 
 
|}
 
|}
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 
----
 
* [[Link to the proper page | Interactive tractography of diffusion MRI data]]
 
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]
 
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]
 
  
 
|}
 
|}

Latest revision as of 14:20, 11 August 2016

Home < Documentation < Nightly < 2016-User-Manual-Discussion


3D Slicer



  • Analysis and visualization of medical images
  • Image guided therapy research, device interfaces.
  • Extensible, free, open source. See here for the license


  • Designed for biomedical research
  • Multi organ capability: from head to toe.
  • Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.

Where to start ?




The Basics



Advanced Topics




Core Functions


To add data, just drag and drop To save data, select the save icon
Interactive segmentation Interactive Segmentation (at 14 minutes)
Interactive registration Demo of the transforms display feature
Registration library Volume rendering
Fiducials Linear Measurements

Miscellaneous




Documentation in other languages