Difference between revisions of "Documentation/Nightly/2016-User-Manual-Discussion"

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3D Slicer
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">3D Slicer</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
 
* Analysis and visualization of medical images
 
* Analysis and visualization of medical images
 
* Image guided therapy research, device interfaces.
 
* Image guided therapy research, device interfaces.
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* Extensible, free, open source. See [[Link to License|here]] for the license
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* Extensible, free, open source. See [https://www.slicer.org/pages/LicenseText here] for the license
  
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Highlights</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
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* Designed for biomedical research
 
* Designed for biomedical research
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* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
 
* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
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* [[ link to Training pages|Self-training]]
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* [[ New_users|Getting started]]
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* [[link to FAQ|Frequently asked questions]]
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* [[ Documentation/{{documentation/version}}/Training|Self-Training: Tutorials and sample data]]
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* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users of 3D Slicer] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] <br> [http://slicer-users.65878.n3.nabble.com/ Search the mailing list archives]
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* [[FAQ|Frequently asked questions]]
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* [[Link to report a problem page|Report a problem or request a feature (edit that page accordingly, aimed at end users, not developers)]]
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* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
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* How to [[CitingSlicer|cite 3D Slicer and individual 3D Slicer Modules]]  
 
----
 
----
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
----
 
----
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* A [[Link to the proper page| tour through the main window of 3D Slicer]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/Installation|Installation]]
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* [[Link to the proper page| Layouts and viewers]]
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* A [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI|tour through the main window of 3D Slicer]]
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* [[Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Layouts|Layouts]], [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#3D_Viewer|3D Viewers]], and [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Slice_Viewers|Slice Viewers]]
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* Where to modify [[settings]] and where they are [[stored]] (refers to the Edit/Appplication Settings pop up panel)
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* [[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts|Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
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* [[Hardware requirements]]
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* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
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* [[Link to portal page about loading data|Loading]], [[Saving data]] and [[listing of supported data formats]].
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* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
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*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]].
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<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
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 +
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 +
----
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* [http://slicerdmri.github.io/  Interactive tractography using diffusion MRI data]
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* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]
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* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]
  
  
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Modules</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
----
 
----
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{| class="wikitable"
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| [[image:Load-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/LoadingData| To add data, just drag and drop]]
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| [[image:Save-Icon-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/SavingData| To save data, select the save icon]]
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|-
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| [[Image:2016-07-03-Interactive-Editor-Icon.png|100 px| link=Link to Editor module |Interactive segmentation]] 
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| [[image:Editor-panel.png|100px|link=https://www.youtube.com/watch?v=MKLWzD0PiIc| Interactive Segmentation (at 14 minutes)]]
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|-
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| [[Image:2016-07-03-Transforms-Module-Icon.png|100 px|link=Documentation/Nightly/Modules/Transforms|Interactive registration]]
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| [[Image:Grid3dVolume.png|100px|link=https://www.youtube.com/watch?v=kZUAfR0mqqI| Demo of the transforms display feature]]
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|-
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| [[Image:SlicerRegistrationLibrary_Ad.png|100px|link=Documentation/Nightly/Registration/RegistrationLibrary|Registration library]]
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| [[Image:VolumeRendering-CTA-2011.png|100 px|link=Documentation/Nightly/Modules/VolumeRendering | Volume rendering]]
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|-
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| [[Image:Fiducial-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Markups| Fiducials]]
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| [[Image:Ruler-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Annotations| Linear Measurements]]
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|}
  
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[[Image:2016-07-03-Interactive-Editor-Icon.png|60 px| Link= Link to Editor module |Interactive segmentation]]    Interactive segmentation, [[link to the proper page|and addtional effects]]
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|}
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<br>[[Image:2016-07-03-Transforms-Module-Icon.png|60 px| Link= Link to Transforms module |Interactive]]    Interactive registration
 
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<BR>[[Image:Grid3dVolume.png|60 px| Link to the brainsfit page| Automated]] Automated registration
 
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<BR> [[Image:SlicerRegistrationLibrary_Ad.png|80px|link to the proper page| Registration Solutions library]]  Registration library
 
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<BR> [[Image:2016-07-03-Volume-Rendering-Icon.png|60 px| Link= Link to Volume rendering module | Volume rendering]]    Volume rendering
 
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<BR> [[Link to the fiducials page | Fiducials]] and [[link to the linear measurements page| Linear Measurements]]
 
  
−
----
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* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
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* Listing in two columns:
−
----
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** Alphabetic list of modules
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* [[Link to the proper page | Interactive tractography of diffusion MRI data]]  
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** Alphabetic list of extensions
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* [[Link to the proper page | Slicer IGT]]
 
−
* [[Link to the proper page | Slicer RT]]
 
  
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----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
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* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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* Slicer Lookup Tables
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* [[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]]
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* Setting up and using stereoscopic viewing
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* [[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
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* QtTesting - Easy way to record and play macros
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* [[Documentation/{{documentation/version}}/SlicerApplication/QtTesting |  QtTesting - Easy way to record and play macros]]
  
  
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
----
 
----
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* [[Link to the appropriate language page | Español]]
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{{:Documentation/{{documentation/version}}/Lang/ES}}
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|}
 
|}
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* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
 
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* Listing in two columns:
 
−
** Alphabetic list of modules
 
−
** Alphabetic list of extensions
 

Latest revision as of 14:20, 11 August 2016

Home < Documentation < Nightly < 2016-User-Manual-Discussion


3D Slicer

  • Analysis and visualization of medical images
  • Image guided therapy research, device interfaces.
  • Extensible, free, open source. See here for the license

  • Designed for biomedical research
  • Multi organ capability: from head to toe.
  • Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.

Where to start ?

The Basics

Advanced Topics


Core Functions

To add data, just drag and drop To save data, select the save icon
Interactive segmentation Interactive Segmentation (at 14 minutes)
Interactive registration Demo of the transforms display feature
Registration library Volume rendering
Fiducials Linear Measurements

Miscellaneous


Documentation in other languages

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