Difference between revisions of "Documentation/Nightly/2016-User-Manual-Discussion"

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__NOTOC__
 
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{{documentation/versionlist}}
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<!--{{documentation/versionlist}}-->
  
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3D Slicer
 
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----
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
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----
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* Analysis and visualization of medical images
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* Image guided therapy research, device interfaces.
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* Extensible, free, open source. See [https://www.slicer.org/pages/LicenseText here] for the license
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----
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
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----
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* Designed for biomedical research
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* Multi organ capability: from head to toe.
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* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
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* [[Documentation/{{documentation/version}}/Training|Training pages]]
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* [[ New_users|Getting started]]
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: Information on how to use Slicer {{documentation/version}}
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* [[ Documentation/{{documentation/version}}/Training|Self-Training: Tutorials and sample data]]
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* [[FAQ|Frequently asked questions]]
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* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
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* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
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: Set of common questions/answers
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* How to [[CitingSlicer|cite 3D Slicer and individual 3D Slicer Modules]]  
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* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives]
 
 
----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
 
 
----
 
----
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* [[Documentation/{{documentation/version}}/Report a problem|Report a problem]] / [[Documentation/{{documentation/version}}/Create_a_feature_request|Create a feature request]]{{new}}
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<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
----
 
----
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{{:{{FULLPAGENAME}}/SlicerApplication}}
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* [[Documentation/{{documentation/version}}/SlicerApplication/Installation|Installation]]
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* A [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI|tour through the main window of 3D Slicer]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Layouts|Layouts]], [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#3D_Viewer|3D Viewers]], and [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Slice_Viewers|Slice Viewers]]
 +
* [[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts|Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
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* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
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*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]].
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<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
  
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Module Categories</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 
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* [[#Core Modules|Core Modules]]
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* [http://slicerdmri.github.io/  Interactive tractography using diffusion MRI data]
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* [[#Wizards|Wizards]]
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* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]  
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* [[#Informatics|Informatics]]
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* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]  
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* [[#Registration|Registration]]
 
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* [[#Segmentation|Segmentation]]
 
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* [[#Quantification|Quantification]]
 
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* [[#Diffusion|Diffusion]]
 
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* [[#IGT|IGT]]
 
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* [[#Filtering|Filtering]]
 
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* [[#Surface Models|Surface Models]]
 
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* [[#Converters|Converters]]
 
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* [[#Endoscopy|Endoscopy]]
 
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* [[#Work in Progress| Work in Progress]]
 
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* [[#Developer Tools|Developer Tools]]
 
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* [[#Legacy|Legacy]]
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Extension Categories</span> {{new}}
 
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----
 
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{{note}} What are these categories ? See [[Documentation/{{documentation/version}}/Extensions/CatalogPolicies|here]]
 
  
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* [[#Cat_1|Category 1]]
 
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* [[#Cat_2|Category 2]]
 
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* [[#Cat_3|Category 3]]
 
  
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
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----
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* [[Documentation/Nightly/Developers | Information for Software Developers]]{{updated}}
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{| class="wikitable"
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: Source code, contribute patch, develop modules
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| [[image:Load-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/LoadingData| To add data, just drag and drop]]
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| [[image:Save-Icon-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/SavingData| To save data, select the save icon]]
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|-
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| [[Image:2016-07-03-Interactive-Editor-Icon.png|100 px| link=Link to Editor module |Interactive segmentation]] 
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| [[image:Editor-panel.png|100px|link=https://www.youtube.com/watch?v=MKLWzD0PiIc| Interactive Segmentation (at 14 minutes)]]
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|-
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| [[Image:2016-07-03-Transforms-Module-Icon.png|100 px|link=Documentation/Nightly/Modules/Transforms|Interactive registration]]
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| [[Image:Grid3dVolume.png|100px|link=https://www.youtube.com/watch?v=kZUAfR0mqqI| Demo of the transforms display feature]]
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|-
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| [[Image:SlicerRegistrationLibrary_Ad.png|100px|link=Documentation/Nightly/Registration/RegistrationLibrary|Registration library]]
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| [[Image:VolumeRendering-CTA-2011.png|100 px|link=Documentation/Nightly/Modules/VolumeRendering | Volume rendering]]
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|-
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| [[Image:Fiducial-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Markups| Fiducials]]
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| [[Image:Ruler-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Annotations| Linear Measurements]]
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|}
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|}
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* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
 +
* Listing in two columns:
 +
** Alphabetic list of modules
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** Alphabetic list of extensions
 +
 
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* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 
−
: Intended for discussion of programming related questions
 
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
----
 
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<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
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* [[Documentation/Nightly/Developers | Information for Software Developers]]
 +
* [[Slicer4:VisualBlog|Visual blog: A set of screenshots showing Slicer in action.]]
 +
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 +
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
 +
* [[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]]
 +
* [[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
 +
* [[Documentation/{{documentation/version}}/SlicerApplication/QtTesting |  QtTesting - Easy way to record and play macros]]
  
−
* [[Documentation/{{documentation/version}}/HowTo|Documentation guidelines]]
 
−
:  Slicer user documentation principle and guidelines
 
  
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* [[Slicer4:VisualBlog|Visual blog]]
 
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: Set of screenshots showing Slicer in action.
 
−
 
−
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]
 
−
: Platform specific issues and considerations
 
−
 
−
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
 
−
 
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.3/Registration/RegistrationLibrary Slicer Registration Library]
 
−
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.
 
  
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentación en Español</span> {{new}}
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
----
 
----
−
* [http://robustiana.com/156-intro-a-3d-slicer Introducción a 3D Slicer en Español]
+
{{:Documentation/{{documentation/version}}/Lang/ES}}
−
: Breve descripción de proyecto y un breve viaje por sus principales herramientas y funcionalidades.
 
−
 
 
−
* [http://robustiana.com/157-recon-volumetricas Reconstrucciones volumétricas con 3D Slicer]
 
−
: Guía de uso para la herramienta de creación de reconstrucciones volumétricas de 3D Slicer. 
 
−
 
 
−
* [http://robustiana.com/158-contornos-3d-slicer Crear modelos/contornos de órganos con 3D Slicer]
 
−
: Guía rápida introductoria para la creación de contornos de órganos para generar vistas volumétricas.
 
−
 
 
−
* [http://robustiana.com/159-endoscopias-3d-slicer Endoscopías virtuales con 3D Slicer]
 
−
: Manual de uso de la herramienta para 3D Slicer desarrollada por Steve Pieper para realizar endoscopías virtuales.
 
−
 
 
−
* [http://robustiana.com/163-rt-slicer-3d Creando curvas de isodosis con SlicerRT de 3D Slicer]
 
−
: Introducción a la extensión SlicerRT para 3D Slicer enfocada en investigación en radioterapia.
 
−
 
 
 
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Latest revision as of 14:20, 11 August 2016

Home < Documentation < Nightly < 2016-User-Manual-Discussion


3D Slicer

  • Analysis and visualization of medical images
  • Image guided therapy research, device interfaces.
  • Extensible, free, open source. See here for the license

  • Designed for biomedical research
  • Multi organ capability: from head to toe.
  • Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.

Where to start ?

The Basics

Advanced Topics


Core Functions

To add data, just drag and drop To save data, select the save icon
Interactive segmentation Interactive Segmentation (at 14 minutes)
Interactive registration Demo of the transforms display feature
Registration library Volume rendering
Fiducials Linear Measurements

Miscellaneous


Documentation in other languages

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