Difference between revisions of "Documentation/Nightly"

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<noinclude>{{documentation/versioncheck}}</noinclude>
 
__NOTOC__
 
__NOTOC__
 
{{documentation/versionlist}}
 
{{documentation/versionlist}}
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
 +
* [[New_users|Getting started]]
 +
: Quick overview about Slicer
 +
 
* [[Documentation/{{documentation/version}}/Training|Training pages]]
 
* [[Documentation/{{documentation/version}}/Training|Training pages]]
 
: Information on how to use Slicer {{documentation/version}}
 
: Information on how to use Slicer {{documentation/version}}
Line 19: Line 23:
 
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
 
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
 
: Set of common questions/answers
 
: Set of common questions/answers
−
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives]
+
 
 +
* [https://discourse.slicer.org Discussion Forum]
 +
: The most effective way to get help from the community
 +
 
 +
<!--
 +
* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list]
 +
-->
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
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|valign="top"|
 
|valign="top"|
 
----
 
----
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">Module Categories</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;">Modules</span>
 
----
 
----
−
* [[#Core Modules|Core Modules]]
+
 
−
* [[#Wizards|Wizards]]
+
{| width="100%" cellspacing="7" cellpadding="2"
−
* [[#Informatics|Informatics]]
+
 
−
* [[#Registration|Registration]]
+
|- style="vertical-align:top; border-style:hidden;"
−
* [[#Segmentation|Segmentation]]
+
 
−
* [[#Quantification|Quantification]]
+
| width="5%" |
−
* [[#Diffusion|Diffusion]]
+
&nbsp;
−
* [[#IGT|IGT]]
+
 
−
* [[#Filtering|Filtering]]
+
| width="45%" |
−
* [[#Surface Models|Surface Models]]
+
 
−
* [[#Converters|Converters]]
+
[[Image:SlicerAnnotationsV2-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Annotations|Annotations]]
−
* [[#Endoscopy|Endoscopy]]
+
<br/>
−
* [[#Work in Progress| Work in Progress]]
+
 
−
* [[#Developer Tools|Developer Tools]]
+
[[Image:DataIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/Data|Data]]
−
* [[#Legacy|Legacy]]
+
<br/>
 +
 
 +
[[Image:DataStoreIcon_128.png|32px]] [[{{FULLPAGENAME}}/Modules/DataStore|Data Store]]
 +
<br/>
 +
 
 +
[[Image:DICOM.png|32px]] [[{{FULLPAGENAME}}/Modules/DICOM|DICOM]]
 +
<br/>
 +
 
 +
[[Image:Editor.png|32px]] [[{{FULLPAGENAME}}/Modules/Editor|Editor]]
 +
<br/>
 +
 
 +
[[Image:Markups.png|32px]] [[{{FULLPAGENAME}}/Modules/Markups|Markups]]
 +
<br/>
 +
 
 +
[[Image:SlicerModels-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Models|Models]]
 +
<br/>
 +
 
 +
[[Image:SceneViews.png|32px]] [[{{FULLPAGENAME}}/Modules/SceneViews|Scene Views]]
 +
<br/>
 +
 
 +
[[Image:Segmentations.png|32px]] [[{{FULLPAGENAME}}/Modules/Segmentations|Segmentations]]
 +
<br/>
 +
 
 +
[[Image:SegmentEditor.png|32px]] [[{{FULLPAGENAME}}/Modules/SegmentEditor|Segment Editor]]
 +
<br/>
 +
 
 +
[[Image:Transforms.png|32px]] [[{{FULLPAGENAME}}/Modules/Transforms|Transforms]]
 +
<br/>
 +
 
 +
[[Image:ViewControllersIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/ViewControllers|View Controllers]]
 +
<br/>
 +
 
 +
[[Image:VolumeRendering.png|32px]] [[{{FULLPAGENAME}}/Modules/VolumeRendering|Volume Rendering]]
 +
<br/>
 +
 
 +
[[Image:SlicerVolume-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Volumes|Volumes]]
 +
<br/>
 +
 
 +
[[Image:Welcome.png|32px]] [[{{FULLPAGENAME}}/Modules/Welcome|Welcome to Slicer]]
 +
<br/>
 +
 
 +
| width="50%" |
 +
 
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}}
 +
 
 +
|}
 +
 
 +
 
 +
<!--
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Extension Categories</span> {{new}}
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Extension Categories</span> {{new}}
 
----
 
----
−
{{note}} What are these categories ? See [http://wiki.slicer.org/slicerWiki/index.php/Documentation/{{documentation/version}}/Extensions/CatalogPolicies here]
+
{{note}} What are these categories ? See [[Documentation/{{documentation/version}}/Extensions/CatalogPolicies|here]]
−
 
+
-->
−
* [[#Cat_1|Category 1]]
 
−
* [[#Cat_2|Category 2]]
 
−
* [[#Cat_3|Category 3]]
 
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
 
----
 
----
−
* [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]]{{updated}}
+
* [[Documentation/Nightly/Developers | Information for Software Developers]]{{updated}}
 
: Source code, contribute patch, develop modules
 
: Source code, contribute patch, develop modules
  
 +
<!--
 
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 
: Intended for discussion of programming related questions
 
: Intended for discussion of programming related questions
 +
-->
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
Line 71: Line 128:
 
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
 
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
  
−
* [[Documentation/4.1/HowTo|Documentation guidelines]]
+
* [[Documentation/{{documentation/version}}/HowTo|Documentation guidelines]]
 
:  Slicer user documentation principle and guidelines
 
:  Slicer user documentation principle and guidelines
  
Line 80: Line 137:
 
: Platform specific issues and considerations
 
: Platform specific issues and considerations
  
−
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
+
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]]
  
−
* [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library]
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Registration/RegistrationLibrary Registration Library]
 
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.  
 
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.  
 +
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages</span>
 +
----
 +
{{:{{FULLPAGENAME}}/Lang/ES}}
  
 
|}
 
|}
  
−
{{:{{FULLPAGENAME}}/Modules}}
+
<!--
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing}}
 +
-->
  
−
{{:{{FULLPAGENAME}}/Extensions}}
+
 
 +
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 +
 
 +
|- style="vertical-align:top; border-style:hidden;"
 +
 
 +
|
 +
 
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing/Extensions_by_name}}
 +
 
 +
|
 +
 
 +
<br/>
 +
<br/>
 +
= Modules by category =
 +
 
 +
== Converters ==
 +
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Developer_Tools'></span>
 +
== Developer Tools ==
 +
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/EventBroker|EventBroker]]
 +
* DoubleArrays    <small>(loadable)</small>
 +
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 +
=== DICOM Plugins ===
 +
* DICOMParametricMapPlugin
 +
* DicomUltrasoundPlugin
 +
* DICOMSegmentationPlugin
 +
* DICOMSlicerDataBundlePlugin
 +
* DICOMTID1500Plugin
 +
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 +
* DICOMScalarVolumePlugin
 +
* DICOMDiffusionVolumePlugin
 +
* DICOMLongitudinalPETCTPlugin
 +
* DicomSroImportPlugin
 +
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 +
* DicomRtImportExportPlugin
 +
* MultiVolumeImporterPlugin
 +
== Diffusion ==
 +
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 +
=== Diffusion Data Conversion ===
 +
* DWIConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 +
=== Diffusion Weighted Images ===
 +
* BRAINSDWICleanup    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
 +
=== Import and Export ===
 +
* DWIConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Process'></span>
 +
=== Utilities ===
 +
* BRAINSDWICleanup    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Endoscopy'></span>
 +
== Endoscopy ==
 +
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Filter'></span>
 +
== Filter ==
 +
* IslandRemoval    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering'></span>
 +
== Filtering ==
 +
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 +
=== Arithmetic ===
 +
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Denoising'></span>
 +
=== Denoising ===
 +
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Morphology'></span>
 +
=== Morphology ===
 +
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli)</small>
 +
<span id='Modules_by_category_IGT'></span>
 +
== IGT ==
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Informatics'></span>
 +
== Informatics ==
 +
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable)</small>
 +
* DumpSEGFrame    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/Terminologies|Terminologies]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Informatics_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy'></span>
 +
== Legacy ==
 +
<span id='Modules_by_category_Legacy_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy_Filtering'></span>
 +
=== Filtering ===
 +
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy_Registration'></span>
 +
=== Registration ===
 +
* TestGridTransformRegistration    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]]    <small>(cli)</small>
 +
== MultiVolume Support ==
 +
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Quantification'></span>
 +
== Quantification ==
 +
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli)</small>
 +
* SegmentStatistics    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted)</small>
 +
* BRAINSLabelStats    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Registration'></span>
 +
== Registration ==
 +
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable)</small>
 +
* BRAINSResize    <small>(cli)</small>
 +
* PerformMetricTest    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Registration_Specialized'></span>
 +
=== Specialized ===
 +
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable)</small>
 +
* VBRAINSDemonWarp    <small>(cli)</small>
 +
<span id='Modules_by_category_Segmentation'></span>
 +
== Segmentation ==
 +
* EMSegmentQuick    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Segmentation_Specialized'></span>
 +
=== Specialized ===
 +
* BRAINSROIAuto    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli)</small>
 +
* EMSegmentCommandLine    <small>(cli)</small>
 +
<span id='Modules_by_category_Surface_Models'></span>
 +
== Surface Models ==
 +
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Utilities'></span>
 +
== Utilities ==
 +
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable)</small>
 +
* DICOMPatcher    <small>(scripted)</small>
 +
* BRAINSStripRotation    <small>(cli)</small>
 +
* EMSegmentTransformToNewFormat    <small>(cli)</small>
 +
<span id='Modules_by_category_Utilities_BRAINS'></span>
 +
=== BRAINS ===
 +
* BRAINSTransformConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Wizards'></span>
 +
== Wizards ==
 +
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted)</small>
 +
 
 +
|}

Revision as of 20:44, 23 November 2017

Home < Documentation < Nightly


For the latest Slicer documentation, visit the read-the-docs.


Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS

Where to start ?

Quick overview about Slicer
Information on how to use Slicer Nightly
Set of common questions/answers
The most effective way to get help from the community

How to

Slicer Application


Modules

 

SlicerAnnotationsV2-Small.png Annotations

DataIcon.png Data

DataStoreIcon 128.png Data Store

DICOM.png DICOM

Editor.png Editor

Markups.png Markups

SlicerModels-Small.png Models

SceneViews.png Scene Views

Segmentations.png Segmentations

SegmentEditor.png Segment Editor

Transforms.png Transforms

ViewControllersIcon.png View Controllers

VolumeRendering.png Volume Rendering

SlicerVolume-Small.png Volumes

Welcome.png Welcome to Slicer




Developers Corner

Source code, contribute patch, develop modules

Miscellaneous

Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentation in other languages




Extensions by name

83 extensions:




Modules by category

Converters

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli)

Diffusion Weighted Images

  • BRAINSDWICleanup (cli)

Import and Export

  • DWIConvert (cli)

Utilities

Endoscopy

Filter

  • IslandRemoval (cli)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

MultiVolume Support

Quantification

Registration

Specialized

Segmentation

Specialized

Surface Models

Utilities

  • ScreenCapture (scripted)
  • DataStore (loadable)
  • DICOMPatcher (scripted)
  • BRAINSStripRotation (cli)
  • EMSegmentTransformToNewFormat (cli)

BRAINS

  • BRAINSTransformConvert (cli)

Wizards

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