Difference between revisions of "Documentation/4.8"

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m (Text replacement - "\[http:\/\/wiki\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2")
 
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<br/>
 
<br/>
  
[[Image:SegmentEditor.png|32px]] [[{{FULLPAGENAME}}/Modules/SegmentEditor|Segment Editor]]
+
[[Image:SegmentEditor.png|32px]] [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor]
 
<br/>
 
<br/>
  
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* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]]
  
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Registration/RegistrationLibrary Registration Library]
+
* [[Documentation/Nightly/Registration/RegistrationLibrary|Registration Library]]
 
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.  
 
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.  
  
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== Converters ==
 
== Converters ==
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable)</small>
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOM Series]]    <small>(cli)</small>
<span id='Modules_by_category_Developer_Tools'></span>
 
== Developer Tools ==
 
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]]    <small>(scripted)</small>
 
* [[Documentation/Nightly/Modules/EventBroker|EventBroker]]
 
* DoubleArrays    <small>(loadable)</small>
 
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
=== DICOM Plugins ===
 
* DICOMParametricMapPlugin
 
* DicomUltrasoundPlugin
 
* DICOMSegmentationPlugin
 
* DICOMSlicerDataBundlePlugin
 
* DICOMTID1500Plugin
 
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 
* DICOMScalarVolumePlugin
 
* DICOMDiffusionVolumePlugin
 
* DICOMLongitudinalPETCTPlugin
 
* DicomSroImportPlugin
 
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* DicomRtImportExportPlugin
 
* MultiVolumeImporterPlugin
 
 
== Diffusion ==
 
== Diffusion ==
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/DMRIInstall|DMRI Install]]    <small>(scripted)</small>
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
* DWIConvert   <small>(cli)</small>
+
* DWI Convert   <small>(cli)</small>
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
* BRAINSDWICleanup   <small>(cli)</small>
+
* BRAINS DWI Cleanup   <small>(cli)</small>
 
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
 
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
 
=== Import and Export ===
 
=== Import and Export ===
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<span id='Modules_by_category_Diffusion_Process'></span>
 
<span id='Modules_by_category_Diffusion_Process'></span>
 
=== Utilities ===
 
=== Utilities ===
* BRAINSDWICleanup   <small>(cli)</small>
+
* BRAINS DWI Cleanup   <small>(cli)</small>
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTI Volume]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWI Volume]]    <small>(cli)</small>
 
<span id='Modules_by_category_Endoscopy'></span>
 
<span id='Modules_by_category_Endoscopy'></span>
 
== Endoscopy ==
 
== Endoscopy ==
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<span id='Modules_by_category_Filtering'></span>
 
<span id='Modules_by_category_Filtering'></span>
 
== Filtering ==
 
== Filtering ==
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4 ITK Bias Field Correction]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli)</small>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
=== Arithmetic ===
 
=== Arithmetic ===
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli)</small>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
=== Denoising ===
 
=== Denoising ===
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli)</small>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
=== Morphology ===
 
=== Morphology ===
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli)</small>
 
<span id='Modules_by_category_IGT'></span>
 
<span id='Modules_by_category_IGT'></span>
 
== IGT ==
 
== IGT ==
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLink IF]]    <small>(loadable)</small>
 
<span id='Modules_by_category_Informatics'></span>
 
<span id='Modules_by_category_Informatics'></span>
 
== Informatics ==
 
== Informatics ==
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG 2 NRRD]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable)</small>
Line 256: Line 234:
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable)</small>
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable)</small>
 
<span id='Modules_by_category_Informatics_Converters'></span>
 
<span id='Modules_by_category_Informatics_Converters'></span>
 
=== Converters ===
 
=== Converters ===
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]]    <small>(cli)</small>
 
<span id='Modules_by_category_Legacy'></span>
 
<span id='Modules_by_category_Legacy'></span>
 
== Legacy ==
 
== Legacy ==
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
=== Converters ===
 
=== Converters ===
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli)</small>
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
=== Filtering ===
 
=== Filtering ===
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli)</small>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
=== Registration ===
 
=== Registration ===
* TestGridTransformRegistration   <small>(cli)</small>
+
* Test Grid Transform Registration   <small>(cli)</small>
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli)</small>
 
== MultiVolume Support ==
 
== MultiVolume Support ==
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolume Importer]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolume Explorer]]    <small>(loadable)</small>
 
<span id='Modules_by_category_Quantification'></span>
 
<span id='Modules_by_category_Quantification'></span>
 
== Quantification ==
 
== Quantification ==
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]]    <small>(cli)</small>
* SegmentStatistics   <small>(scripted)</small>
+
* Segment Statistics   <small>(scripted)</small>
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted)</small>
 
* BRAINSLabelStats    <small>(cli)</small>
 
* BRAINSLabelStats    <small>(cli)</small>
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted)</small>
 
<span id='Modules_by_category_Registration'></span>
 
<span id='Modules_by_category_Registration'></span>
 
== Registration ==
 
== Registration ==
Line 293: Line 271:
 
* BRAINSResize    <small>(cli)</small>
 
* BRAINSResize    <small>(cli)</small>
 
* PerformMetricTest    <small>(cli)</small>
 
* PerformMetricTest    <small>(cli)</small>
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINS Resample]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/BRAINSFit|General registration (BRAINS)]]    <small>(cli)</small>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ACPCTransform|AC-PC Transform]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINS Demon Warp]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable)</small>
 
* VBRAINSDemonWarp    <small>(cli)</small>
 
* VBRAINSDemonWarp    <small>(cli)</small>
 
<span id='Modules_by_category_Segmentation'></span>
 
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
* EMSegmentQuick   <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]   <small>(loadable)</small>
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted)</small>
+
* [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor]    <small>(scripted)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable)</small>
 +
* EMSegmentQuick    <small>(loadable)</small>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
* BRAINSROIAuto   <small>(cli)</small>
+
* BRAINS ROI Auto   <small>(cli)</small>
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli)</small>
* EMSegmentCommandLine   <small>(cli)</small>
+
* EMSegment CommandLine   <small>(cli)</small>
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 +
 
== Surface Models ==
 
== Surface Models ==
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To LabelMap]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMap Smoothing]]    <small>(cli)</small>
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli)</small>
+
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli)</small>
 
<span id='Modules_by_category_Utilities'></span>
 
<span id='Modules_by_category_Utilities'></span>
 
== Utilities ==
 
== Utilities ==
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]]    <small>(scripted)</small>
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable)</small>
+
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable)</small>
* DICOMPatcher   <small>(scripted)</small>
+
* DICOM Patcher   <small>(scripted)</small>
* BRAINSStripRotation   <small>(cli)</small>
+
* BRAINS Strip Rotation   <small>(cli)</small>
* EMSegmentTransformToNewFormat   <small>(cli)</small>
+
* EMSegment Transform To New Format   <small>(cli)</small>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
=== BRAINS ===
 
=== BRAINS ===
* BRAINSTransformConvert   <small>(cli)</small>
+
* BRAINS Transform Convert   <small>(cli)</small>
 
<span id='Modules_by_category_Wizards'></span>
 
<span id='Modules_by_category_Wizards'></span>
 
== Wizards ==
 
== Wizards ==
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted)</small>
+
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Developer_Tools'></span>
 +
== Developer Tools ==
 +
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
 +
* DoubleArrays    <small>(loadable)</small>
 +
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 +
=== DICOM Plugins ===
 +
* DICOMParametricMapPlugin
 +
* DicomUltrasoundPlugin
 +
* DICOMSegmentationPlugin
 +
* DICOMSlicerDataBundlePlugin
 +
* DICOMTID1500Plugin
 +
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 +
* DICOMScalarVolumePlugin
 +
* DICOMDiffusionVolumePlugin
 +
* DICOMLongitudinalPETCTPlugin
 +
* DicomSroImportPlugin
 +
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 +
* DicomRtImportExportPlugin
 +
* MultiVolumeImporterPlugin
  
 
|}
 
|}

Latest revision as of 02:12, 27 November 2019

Home < Documentation < 4.8


For the latest Slicer documentation, visit the read-the-docs.


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Where to start ?


Quick overview about Slicer
Information on how to use Slicer 4.8
Set of common questions/answers
The most effective way to get help from the community

How to



Slicer Application




Modules


 

SlicerAnnotationsV2-Small.png Annotations

DataIcon.png Data

DataStoreIcon 128.png Data Store

DICOM.png DICOM

Editor.png Editor

Markups.png Markups

SlicerModels-Small.png Models

SceneViews.png Scene Views

Segmentations.png Segmentations

SegmentEditor.png Segment Editor

Transforms.png Transforms

ViewControllersIcon.png View Controllers

VolumeRendering.png Volume Rendering

SlicerVolume-Small.png Volumes

Welcome.png Welcome to Slicer





Developers Corner


Source code, contribute patch, develop modules

Miscellaneous


Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentation in other languages





Extensions by name

83 extensions:




Modules by category

Converters

Diffusion

Diffusion Data Conversion

  • DWI Convert (cli)

Diffusion Weighted Images

  • BRAINS DWI Cleanup (cli)

Import and Export

  • DWIConvert (cli)

Utilities

Endoscopy

Filter

  • IslandRemoval (cli)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

MultiVolume Support

Quantification

Registration

Specialized

Segmentation

Specialized

Surface Models

Utilities

  • Screen Capture (scripted)
  • Data Store (loadable)
  • DICOM Patcher (scripted)
  • BRAINS Strip Rotation (cli)
  • EMSegment Transform To New Format (cli)

BRAINS

  • BRAINS Transform Convert (cli)

Wizards

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin