Documentation/4.6

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Home < Documentation < 4.6

For the latest Slicer documentation, visit the 4.8 page.

Nightly 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS


Where to start ?


Quick overview about Slicer
Information on how to use Slicer 4.6
Set of common questions/answers

How to



Slicer Application




Modules and Extensions



List of extensions known to be broken



Developers Corner


Source code, contribute patch, develop modules
Intended for discussion of programming related questions

Miscellaneous


Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentation in other languages




Modules by category

36 categories:

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

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DICOM Plugins

  • Dicom Ultrasound Plugin
  • DICOMSegmentation Plugin
  • DICOMSlicer Data Bundle Plugin
  • DICOMPETSUVPlugin
  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMRWVMPlugin
  • Dicom Rt Import Export Plugin
  • Multi Volume Importer Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

Diffusion Tensor Images

Diffusion Weighted Images

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

  • Island Removal (cli, built-in)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Shape Analysis

Slicelets

Surface Models

TestCases

  • SEGExporter Self Test

Testing

  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Slicer MRBSave Restore Check Paths Test
  • CLIROITest (cli, built-in)
  • Performance Tests
  • Slicer MRBMultiple Save Restore Test
  • Slicer MRBTest
  • SEGExporter Self Test
  • Self Tests
  • Slicer MRBMultiple Save Restore Loop Test

IGT Tests

  • Breach Warning Self Test
  • Watchdog Self Test

SlicerRT Tests

TestCases

  • Atlas Tests
  • Add Storable Data After Scene View Test
  • test tractography display
  • RSNAQuant Tutorial
  • Neurosurgical Planning Tutorial Markups Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Graph Cut Segment Self Test
  • Charting (scripted, built-in)
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
  • fiber visibility crash2438
  • RSNAVis Tutorial
  • JRC2013Vis
  • Add Many Markups Fiducial Test
  • Slicer4Minute (scripted, built-in)
  • Crop Volume Self Test
  • Slice Link Logic (scripted, built-in)
  • Volume Rendering Scene Close (scripted, built-in)
  • slicer Close Crash Bug2590
  • CLIEvent Test
  • Markups Widgets Self Test
  • Tables Self Test
  • Markups In Views Self Test
  • Two CLIs In Parallel Test
  • Subject Hierarchy Core Plugins Self Test
  • Subject Hierarchy Generic Self Test
  • Scene Performance (scripted, built-in)
  • Markups In Compare Viewers Self Test
  • scene Import2428
  • RSNA2012Prostate Demo
  • DTINot Reproducible Issue3977
  • Two CLIs In ARow Test
  • Colors Scalar Bar Self Test
  • BRAINSFit Rigid Registration Crash Issue4139
  • View Controllers Slice Interpolation Bug1926

Utilities

  • Data Store (loadable, built-in)
  • BRAINSStrip Rotation (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Modules by name

311 modules: