Documentation/4.5/SlicerApplication/LookupTables/GenericAnatomyColors

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2010 Generic Anatomy Colors for use with the Slicer3 Editor Module as a default color table for editing medical image data with no prior knowledge of the condition, modality, or specific anatomical region being displayed. When additional protocol knowledge is available (i.e. angiography of the brain) a different color table with more specific labels may be chosen.

Authors: Michael Halle, Florin Talos, Ron Kikinis, Steve Pieper, Nicole Aucoin, Marianna Jakab

Note: a mapping of the items in this table to SNOMED terminology is available here: https://docs.google.com/spreadsheets/d/1nmGRU3DHzCtjIbdGTHTEejCQ21Vx48-XORsUtsCaI-I/edit#gid=6.

Lookup table

integer_label text_label color notes
0 background rgba(0,0,0,0)
1 tissue rgb(128,174,128) Default label for bodily tissues
2 bone rgb(241,214,145)
3 skin rgb(177,122,101)
4 connective tissue rgb(111,184,210)
5 blood rgb(216,101,79)
6 organ rgb(221,130,101)
7 mass rgb(144,238,144) Could be tumor or other lesion
8 muscle rgb(192,104,88)
9 foreign object rgb(220,245,20) Implants, surical instruments, table...
10 waste rgb(78,63,0)
11 teeth rgb(255,250,220)
12 fat rgb(230,220,70)
13 gray matter rgb(200,200,235)
14 white matter rgb(250,250,210)
15 nerve rgb(244,214,49)
16 vein rgb(0,151,206)
17 artery rgb(216,101,79)
18 capillary rgb(183,156,220)
19 ligament rgb(183,214,211)
20 tendon rgb(152,189,207)
21 cartilage rgb(111,184,210)
22 meniscus rgb(178,212,242)
23 lymph node rgb(68,172,100)
24 lymphatic vessel rgb(111,197,131)
25 cerebro-spinal fluid rgb(85,188,255)
26 bile rgb(0,145,30)
27 urine rgb(214,230,130)
28 feces rgb(78,63,0)
29 gas rgb(218,255,255)
30 fluid rgb(170,250,250)
31 edema rgb(140,224,228)
32 bleeding rgb(188,65,28)
33 necrosis rgb(216,191,216)
34 clot rgb(145,60,66)
35 embolism rgb(150,98,83)
36 head rgb(177,122,101)
37 central nervous system rgb(244,214,49)
38 brain rgb(250,250,225)
39 gray matter of brain rgb(200,200,215)
40 telencephalon rgb(68,131,98)
41 cerebral cortex rgb(128,174,128)
42 right frontal lobe rgb(83,146,164)
43 left frontal lobe rgb(83,146,164)
44 right temporal lobe rgb(162,115,105)
45 left temporal lobe rgb(162,115,105)
46 right parietal lobe rgb(141,93,137)
47 left parietal lobe rgb(141,93,137)
48 right occipital lobe rgb(182,166,110)
49 left occipital lobe rgb(182,166,110)
50 right insular lobe rgb(188,135,166)
51 left insular lobe rgb(188,135,166)
52 right limbic lobe rgb(154,150,201)
53 left limbic lobe rgb(154,150,201)
54 right striatum rgb(177,140,190)
55 left striatum rgb(177,140,190)
56 right caudate nucleus rgb(30,111,85)
57 left caudate nucleus rgb(30,111,85)
58 right putamen rgb(210,157,166)
59 left putamen rgb(210,157,166)
60 right pullidum rgb(48,129,126)
61 left pallidum rgb(48,129,126)
62 right amygdaloid complex rgb(98,153,112)
63 left amygdaloid complex rgb(98,153,112)
64 diencephalon rgb(69,110,53)
65 thalamus rgb(166,113,137)
66 right thalamus rgb(122,101,38)
67 left thalamus rgb(122,101,38)
68 pineal gland rgb(253,135,192)
69 midbrain rgb(145,92,109)
70 substantia nigra rgb(46,101,131)
71 right substantia nigra rgb(0,108,112)
72 left substantia nigra rgb(0,108,112)
73 cerebral white matter rgb(250,250,225)
74 right superior longitudinal fasciculus rgb(127,150,88)
75 left superior longitudinal fasciculus rgb(127,150,88)
76 right inferior longitudinal fasciculus rgb(159,116,163)
77 left inferior longitudinal fasciculus rgb(159,116,163)
78 right arcuate fasciculus rgb(125,102,154)
79 left arcuate fasciculus rgb(125,102,154)
80 right uncinate fasciculus rgb(106,174,155)
81 left uncinate fasciculus rgb(106,174,155)
82 right cingulum bundle rgb(154,146,83)
83 left cingulum bundle rgb(154,146,83)
84 projection fibers rgb(126,126,55)
85 right corticospinal tract rgb(201,160,133)
86 left corticospinal tract rgb(201,160,133)
87 right optic radiation rgb(78,152,141)
88 left optic radiation rgb(78,152,141)
89 right medial lemniscus rgb(174,140,103)
90 left medial lemniscus rgb(174,140,103)
91 right superior cerebellar peduncle rgb(139,126,177)
92 left superior cerebellar peduncle rgb(139,126,177)
93 right middle cerebellar peduncle rgb(148,120,72)
94 left middle cerebellar peduncle rgb(148,120,72)
95 right inferior cerebellar peduncle rgb(186,135,135)
96 left inferior cerebellar peduncle rgb(186,135,135)
97 optic chiasm rgb(99,106,24)
98 right optic tract rgb(156,171,108)
99 left optic tract rgb(156,171,108)
100 right fornix rgb(64,123,147)
101 left fornix rgb(64,123,147)
102 commissural fibers rgb(138,95,74)
103 corpus callosum rgb(97,113,158)
104 posterior commissure rgb(126,161,197)
105 cerebellar white matter rgb(194,195,164)
106 CSF space rgb(85,188,255)
107 ventricles of brain rgb(88,106,215)
108 right lateral ventricle rgb(88,106,215)
109 left lateral ventricle rgb(88,106,215)
110 right third ventricle rgb(88,106,215)
111 left third ventricle rgb(88,106,215)
112 cerebral aqueduct rgb(88,106,215)
113 fourth ventricle rgb(88,106,215)
114 subarachnoid space rgb(88,106,215)
115 spinal cord rgb(244,214,49)
116 gray matter of spinal cord rgb(200,200,215)
117 white matter of spinal cord rgb(250,250,225)
118 endocrine system of brain rgb(82,174,128)
119 pituitary gland rgb(57,157,110)
120 adenohypophysis rgb(60,143,83)
121 neurohypophysis rgb(92,162,109)
122 meninges rgb(255,244,209)
123 dura mater rgb(255,244,209)
124 arachnoid rgb(255,244,209)
125 pia mater rgb(255,244,209)
126 muscles of head rgb(201,121,77)
127 salivary glands rgb(70,163,117)
128 lips rgb(188,91,95)
129 nose rgb(177,122,101)
130 tongue rgb(166,84,94)
131 soft palate rgb(182,105,107)
132 right inner ear rgb(229,147,118)
133 left inner ear rgb(229,147,118)
134 right external ear rgb(174,122,90)
135 left external ear rgb(174,122,90)
136 right middle ear rgb(201,112,73)
137 left middle ear rgb(201,112,73)
138 right eyeball rgb(194,142,0)
139 left eyeball rgb(194,142,0)
140 skull rgb(241,213,144)
141 right frontal bone rgb(203,179,77)
142 left frontal bone rgb(203,179,77)
143 right parietal bone rgb(229,204,109)
144 left parietal bone rgb(229,204,109)
145 right temporal bone rgb(255,243,152)
146 left temporal bone rgb(255,243,152)
147 right sphenoid bone rgb(209,185,85)
148 left sphenoid bone rgb(209,185,85)
149 right ethmoid bone rgb(248,223,131)
150 left ethmoid bone rgb(248,223,131)
151 occipital bone rgb(255,230,138)
152 maxilla rgb(196,172,68)
153 right zygomatic bone rgb(255,255,167)
154 right lacrimal bone rgb(255,250,160)
155 vomer bone rgb(255,237,145)
156 right palatine bone rgb(242,217,123)
157 left palatine bone rgb(242,217,123)
158 mandible rgb(222,198,101)
159 neck rgb(177,122,101)
160 muscles of neck rgb(213,124,109)
161 pharynx rgb(184,105,108)
162 larynx rgb(150,208,243)
163 thyroid gland rgb(62,162,114)
164 right parathyroid glands rgb(62,162,114)
165 left parathyroid glands rgb(62,162,114)
166 skeleton of neck rgb(242,206,142)
167 hyoid bone rgb(250,210,139)
168 cervical vertebral column rgb(255,255,207)
169 thorax rgb(177,122,101)
170 trachea rgb(182,228,255)
171 bronchi rgb(175,216,244)
172 right lung rgb(197,165,145)
173 left lung rgb(197,165,145)
174 superior lobe of right lung rgb(172,138,115)
175 superior lobe of left lung rgb(172,138,115)
176 middle lobe of right lung rgb(202,164,140)
177 inferior lobe of right lung rgb(224,186,162)
178 inferior lobe of left lung rgb(224,186,162)
179 pleura rgb(255,245,217)
180 heart rgb(206,110,84)
181 right atrium rgb(210,115,89)
182 left atrium rgb(203,108,81)
183 atrial septum rgb(233,138,112)
184 ventricular septum rgb(195,100,73)
185 right ventricle of heart rgb(181,85,57)
186 left ventricle of heart rgb(152,55,13)
187 mitral valve rgb(159,63,27)
188 tricuspid valve rgb(166,70,38)
189 aortic valve rgb(218,123,97)
190 pulmonary valve rgb(225,130,104)
191 aorta rgb(224,97,76)
192 pericardium rgb(255,244,209)
193 pericardial cavity rgb(184,122,154)
194 esophagus rgb(211,171,143)
195 thymus rgb(47,150,103)
196 mediastinum rgb(255,244,209)
197 skin of thoracic wall rgb(173,121,88)
198 muscles of thoracic wall rgb(188,95,76)
199 skeleton of thorax rgb(255,239,172)
200 thoracic vertebral column rgb(226,202,134)
201 ribs rgb(253,232,158)
202 sternum rgb(244,217,154)
203 right clavicle rgb(205,179,108)
204 left clavicle rgb(205,179,108)
205 abdominal cavity rgb(186,124,161)
206 abdomen rgb(177,122,101)
207 peritoneum rgb(255,255,220)
208 omentum rgb(234,234,194)
209 peritoneal cavity rgb(204,142,178)
210 retroperitoneal space rgb(180,119,153)
211 stomach rgb(216,132,105)
212 duodenum rgb(255,253,229)
213 small bowel rgb(205,167,142)
214 colon rgb(204,168,143)
215 anus rgb(255,224,199)
216 liver rgb(221,130,101)
217 biliary tree rgb(0,145,30)
218 gallbladder rgb(139,150,98)
219 pancreas rgb(249,180,111)
220 spleen rgb(157,108,162)
221 urinary system rgb(203,136,116)
222 right kidney rgb(185,102,83)
223 left kidney rgb(185,102,83)
224 right ureter rgb(247,182,164)
225 left ureter rgb(247,182,164)
226 urinary bladder rgb(222,154,132)
227 urethra rgb(124,186,223)
228 right adrenal gland rgb(249,186,150)
229 left adrenal gland rgb(249,186,150)
230 female internal genitalia rgb(244,170,147)
231 uterus rgb(255,181,158)
232 right fallopian tube rgb(255,190,165)
233 left fallopian tube rgb(227,153,130)
234 right ovary rgb(213,141,113)
235 left ovary rgb(213,141,113)
236 vagina rgb(193,123,103)
237 male internal genitalia rgb(216,146,127)
238 prostate rgb(230,158,140)
239 right seminal vesicle rgb(245,172,147)
240 left seminal vesicle rgb(245,172,147)
241 right deferent duct rgb(241,172,151)
242 left deferent duct rgb(241,172,151)
243 skin of abdominal wall rgb(177,124,92)
244 muscles of abdominal wall rgb(171,85,68)
245 skeleton of abdomen rgb(217,198,131)
246 lumbar vertebral column rgb(212,188,102)
247 female external genitalia rgb(185,135,134)
248 male external genitalia rgb(185,135,134)
249 skeleton of upper limb rgb(198,175,125)
250 muscles of upper limb rgb(194,98,79)
251 right upper limb rgb(177,122,101)
252 left upper limb rgb(177,122,101)
253 right shoulder rgb(177,122,101)
254 left shoulder rgb(177,122,101)
255 right arm rgb(177,122,101)
256 left arm rgb(177,122,101)
257 right elbow rgb(177,122,101)
258 left elbow rgb(177,122,101)
259 right forearm rgb(177,122,101)
260 left forearm rgb(177,122,101)
261 right wrist rgb(177,122,101)
262 left wrist rgb(177,122,101)
263 right hand rgb(177,122,101)
264 left hand rgb(177,122,101)
265 skeleton of lower limb rgb(255,238,170)
266 muscles of lower limb rgb(206,111,93)
267 right lower limb rgb(177,122,101)
268 left lower limb rgb(177,122,101)
269 right hip rgb(177,122,101)
270 left hip rgb(177,122,101)
271 right thigh rgb(177,122,101)
272 left thigh rgb(177,122,101)
273 right knee rgb(177,122,101)
274 left knee rgb(177,122,101)
275 right leg rgb(177,122,101)
276 left leg rgb(177,122,101)
277 right foot rgb(177,122,101)
278 left foot rgb(177,122,101)
279 peripheral nervous system rgb(216,186,0)
280 autonomic nerve rgb(255,226,77)
281 sympathetic trunk rgb(255,243,106)
282 cranial nerves rgb(255,234,92)
283 vagus nerve rgb(240,210,35)
284 peripheral nerve rgb(224,194,0)
285 circulatory system rgb(213,99,79)
286 systemic arterial system rgb(217,102,81)
287 systemic venous system rgb(0,147,202)
288 pulmonary arterial system rgb(0,122,171)
289 pulmonary venous system rgb(186,77,64)
290 lymphatic system rgb(111,197,131)
291 needle rgb(240,255,30)
292 region 0 rgb(185,232,61)
293 region 1 rgb(0,226,255)
294 region 2 rgb(251,159,255)
295 region 3 rgb(230,169,29)
296 region 4 rgb(0,194,113)
297 region 5 rgb(104,160,249)
298 region 6 rgb(221,108,158)
299 region 7 rgb(137,142,0)
300 region 8 rgb(230,70,0)
301 region 9 rgb(0,147,0)
302 region 10 rgb(0,147,248)
303 region 11 rgb(231,0,206)
304 region 12 rgb(129,78,0)
305 region 13 rgb(0,116,0)
306 region 14 rgb(0,0,255)
307 region 15 rgb(157,0,0)
308 unknown rgb(100,100,130)
309 cyst rgb(205,205,100)