Difference between revisions of "Documentation/4.5/ModuleExtensionListing"

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<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
=== Editor Extensions ===
 
=== Editor Extensions ===
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
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* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
 
<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
=== FiberAnalysis ===
 
* Fiber Post Process    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
 
=== Tractography ===
 
=== Tractography ===
 +
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Interactive Seeding]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleLabelSelection |Fiber Bundle Label Selection]]      <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleLabelSelection |Fiber Bundle Label Selection]]      <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(cli, built-in)</small>
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<span id='Modules_by_category_Examples'></span>
 
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
 
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
<span id='Modules_by_category_Exporter'></span>
 
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
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* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
 
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
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* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
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* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
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== Shape Analysis ==
 
== Shape Analysis ==
 
* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 
* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 
* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 
* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 
<span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span>
 
<span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span>
 
=== CMF Registration ===
 
=== CMF Registration ===
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<span id='Modules_by_category_Slicelets'></span>
 
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
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* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [http://www.chestimagingplatform.org Airway Inspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Airway Inspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
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* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 
* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
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* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
* Fiber Post Process    <small>(cli, built-in)</small>
 
 
* Fiber Tract Measurements    <small>(cli, built-in)</small>
 
* Fiber Tract Measurements    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
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* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
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* Island Removal    <small>(cli, built-in)</small>
 
* Island Removal    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
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* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
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* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
Line 907: Line 905:
 
* [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Tables|Tables]]
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>

Latest revision as of 17:34, 21 November 2019

Home < Documentation < 4.5 < ModuleExtensionListing


Modules by category

37 categories:

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

General

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

  • Dicom Ultrasound Plugin
  • DICOMSegmentation Plugin
  • DICOMSlicer Data Bundle Plugin
  • DICOMPETSUVPlugin
  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMRWVMPlugin
  • Dicom Rt Import Export Plugin
  • Multi Volume Importer Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

  • Island Removal (cli, built-in)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIexport (cli, built-in)
  • DTIimport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Shape Analysis

CMF Registration

Voxelbase Registration

Slicelets

Surface Models

Testing

  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Slicer MRBSave Restore Check Paths Test
  • CLIROITest (cli, built-in)
  • Performance Tests
  • Slicer MRBTest
  • Slicer MRBMultiple Save Restore Test
  • Self Tests
  • Slicer MRBMultiple Save Restore Loop Test

IGT Tests

  • Breach Warning Self Test
  • Watchdog Self Test

SlicerRT Tests

TestCases

  • Atlas Tests
  • Add Storable Data After Scene View Test
  • test tractography display
  • RSNAQuant Tutorial
  • Neurosurgical Planning Tutorial Markups Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Charting (scripted, built-in)
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
  • fiber visibility crash2438
  • RSNAVis Tutorial
  • JRC2013Vis
  • Add Many Markups Fiducial Test
  • Slicer4Minute (scripted, built-in)
  • Crop Volume Self Test
  • Slice Link Logic (scripted, built-in)
  • Volume Rendering Scene Close (scripted, built-in)
  • slicer Close Crash Bug2590
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Subject Hierarchy Generic Self Test
  • Scene Performance (scripted, built-in)
  • Markups In Compare Viewers Self Test
  • scene Import2428
  • RSNA2012Prostate Demo
  • DTINot Reproducible Issue3977
  • Colors Scalar Bar Self Test
  • View Controllers Slice Interpolation Bug1926

Utilities

  • Data Store (loadable, built-in)
  • BRAINSStrip Rotation (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Label To DICOMSEGConverter Self Test
  • Reporting Self Test

Modules by name

311 modules: