Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev edc772c). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
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215 modules:
 
215 modules:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* ACPCTransform    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Add Scalar Volumes    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
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* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* Annotations    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
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* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
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* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* BRAINSDemon Warp    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
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* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
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* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
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* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
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* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Colors    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
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* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Open IGTLink IF    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
= Modules by category =
 
= Modules by category =
 
36 categories:
 
36 categories:
Line 300: Line 300:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]
 
== CMF Registration ==
 
== CMF Registration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]
 
=== Voxelbase Registration ===
 
=== Voxelbase Registration ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]
+
* [[Documentation/4.4/Modules/Growing|Growing]]
 
== Converters ==
 
== Converters ==
* Vector To Scalar Volume
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]
* Crop Volume
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]
* Orient Scalar Volume
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]
* Create DICOMSeries
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]
 
== Developer Tools ==
 
== Developer Tools ==
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* Execution Model Tour
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]
 
* Double Arrays
 
* Double Arrays
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
* Cameras
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]
* Extension Wizard
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMLongitudinal PETCTPlugin
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* Multi Volume Importer Plugin
 
* Multi Volume Importer Plugin
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
* DICOMDiffusion Volume Plugin
 
* DICOMDiffusion Volume Plugin
Line 342: Line 342:
 
* DICOMSlicer Data Bundle Plugin
 
* DICOMSlicer Data Bundle Plugin
 
=== Editor Extensions ===
 
=== Editor Extensions ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]
 
=== Matlab ===
 
=== Matlab ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]
 
== Diffusion ==
 
== Diffusion ==
* Tractography Display
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]
 
* DICOM2Full Brain Tractography
 
* DICOM2Full Brain Tractography
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
 
* DWIConvert
 
* DWIConvert
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
* Resample DTIVolume
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]
* Diffusion Tensor Scalar Measurements
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]
* Tractography Label Map Seeding
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]
 
* Tractography Interactive Seeding
 
* Tractography Interactive Seeding
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
* DWIRician LMMSEFilter
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]
* Resample Scalar Vector DWIVolume
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]
* DWIJoint Rician LMMSEFilter
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]
* DWITo DTIEstimation
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]
* Diffusion Weighted Volume Masking
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]
 
=== FiberAnalysis ===
 
=== FiberAnalysis ===
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]
 
=== Tractography ===
 
=== Tractography ===
* Fiber Bundle To Label Map
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]
 
* Fiber Bundle Label Select
 
* Fiber Bundle Label Select
 
== Editor Effects ==
 
== Editor Effects ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
== Endoscopy ==
 
== Endoscopy ==
* Endoscopy
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]
 
== Examples ==
 
== Examples ==
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Exporter ==
 
== Exporter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== File ==
 
== File ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]
 
== Filtering ==
 
== Filtering ==
* Extract Skeleton
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]
* Threshold Scalar Volume
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]
* N4ITKBias Field Correction
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]
* Simple Filters
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]
* Image Label Combine
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]
* Voting Binary Hole Filling Image Filter
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]
* Histogram Matching
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]
* Checker Board Filter
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]
 
=== Arithmetic ===
 
=== Arithmetic ===
* Multiply Scalar Volumes
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]
* Add Scalar Volumes
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]
* Cast Scalar Volume
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]
* Subtract Scalar Volumes
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]
* Mask Scalar Volume
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]
 
=== Denoising ===
 
=== Denoising ===
* Gradient Anisotropic Diffusion
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]
* Median Image Filter
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]
* Gaussian Blur Image Filter
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]
* Curvature Anisotropic Diffusion
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]
 
=== Morphology ===
 
=== Morphology ===
* Grayscale Fill Hole Image Filter
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]
* Grayscale Grind Peak Image Filter
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]
 
== IGT ==
 
== IGT ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]
* [http://www.slicerigt.org Volume Reslice Driver]
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]
* [http://www.slicerigt.org Collect Fiducials]
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://www.slicerigt.org Create Models]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]
* Open IGTLink IF
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]
* [http://www.slicerigt.org Path Explorer]
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]
* [http://www.slicerigt.org Ultrasound Snapshots]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]
* [http://www.slicerigt.org Transform Fusion]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]
* [http://www.slicerigt.org Breach Warning]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]
* [http://www.slicerigt.org Fiducial Registration Wizard]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]
* [http://www.slicerigt.org Open IGTLink Remote]
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]
* [http://www.slicerigt.org Plus Remote]
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicerigt.org Fiducials To Model Registration]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]
* [http://www.slicerigt.org Pivot Calibration]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]
 
== Informatics ==
 
== Informatics ==
* Annotations
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]
* Markups
+
* [[Documentation/4.4/Modules/Markups|Markups]]
* Units
+
* [[Documentation/4.4/Modules/Units|Units]]
* DICOM
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]
* Sample Data
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]
* Subject Hierarchy
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]
* Data
+
* [[Documentation/4.4/Modules/Data|Data]]
* Colors
+
* [[Documentation/4.4/Modules/Colors|Colors]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 
== Legacy ==
 
== Legacy ==
 
=== Converters ===
 
=== Converters ===
* BSpline To Deformation Field
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
 
=== Diffusion ===
 
=== Diffusion ===
 
==== Denoising ====
 
==== Denoising ====
* DWIUnbiased Non Local Means Filter
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]
 
==== Diffusion Data Conversion ====
 
==== Diffusion Data Conversion ====
 
* DTIimport
 
* DTIimport
 
* DTIexport
 
* DTIexport
 
=== Filtering ===
 
=== Filtering ===
* Otsu Threshold Image Filter
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]
* Resample Scalar Volume
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]
 
=== Registration ===
 
=== Registration ===
 
* Test Grid Transform Registration
 
* Test Grid Transform Registration
* Expert Automated Registration
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]
 
=== Work in Progress ===
 
=== Work in Progress ===
 
==== Diffusion Tensor ====
 
==== Diffusion Tensor ====
Line 465: Line 465:
 
* Diffusion Tensor Test
 
* Diffusion Tensor Test
 
== Mesh Generation ==
 
== Mesh Generation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]
 
== MeshGeneration ==
 
== MeshGeneration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]
 
== Microscopy ==
 
== Microscopy ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]
 
== Multidimensional data ==
 
== Multidimensional data ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]
 
== MultiVolume Support ==
 
== MultiVolume Support ==
* Multi Volume Explorer
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]
* Multi Volume Importer
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]
 
== Perk Tutor ==
 
== Perk Tutor ==
* [http://www.perktutor.org/ Python Metrics Calculator]
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]
* [http://www.perktutor.org/ Workflow Segmentation]
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]
* [http://www.perktutor.org/ Transform Recorder]
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]
* [http://www.perktutor.org/ Perk Evaluator]
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]
 
== Plastimatch ==
 
== Plastimatch ==
* [http://slicerrt.org Dicom Sro Export]
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]
* [http://slicerrt.org Plm Register]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]
 
=== Registration ===
 
=== Registration ===
* [http://slicerrt.org plastimatch slicer bspline]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]
* [http://slicerrt.org plastimatch slicer landwarp]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]
* [http://slicerrt.org plastimatch slicer xformwarp]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]
 
=== Utilities ===
 
=== Utilities ===
* [http://slicerrt.org plastimatch slicer dicomrt export]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]
* [http://slicerrt.org plastimatch slicer dicomrt import]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]
* [http://slicerrt.org Plastimatch Py]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]
 
== Quantification ==
 
== Quantification ==
* PETStandard Uptake Value Computation
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]
* Data Probe
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]
 
== Radiotherapy ==
 
== Radiotherapy ==
* [http://slicerrt.org Contour Comparison]
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]
* [http://slicerrt.org Dicom Rt Import]
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]
* [http://slicerrt.org Beams]
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]
* [http://slicerrt.org Dvh Comparison]
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]
* [http://slicerrt.org Isodose]
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]
* [http://slicerrt.org Contours]
+
* [[Documentation/4.4/Modules/Contours|Contours]]
* [http://slicerrt.org Dose Accumulation]
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]
* [http://slicerrt.org Dicom Rt Export]
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]
* [http://slicerrt.org Dose Comparison]
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]
* [http://slicerrt.org Contour Morphology]
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]
* [http://slicerrt.org Planar Image]
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]
* [http://slicerrt.org Dicom Sro Import]
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]
* [http://slicerrt.org Dose Volume Histogram]
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]
 
== Registration ==
 
== Registration ==
* BRAINSResample
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]
* Transforms
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]
 
* BRAINSResize
 
* BRAINSResize
* BRAINSFit
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
* Perform Metric Test
 
* Perform Metric Test
 
=== Specialized ===
 
=== Specialized ===
* ACPCTransform
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]
* Fiducial Registration
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]
 
* VBRAINSDemon Warp
 
* VBRAINSDemon Warp
* BRAINSDemon Warp
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]
* Reformat
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]
 
== Segmentation ==
 
== Segmentation ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* EMSegment Quick
 
* EMSegment Quick
* Simple Region Growing Segmentation
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
* EMSegment
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]
 
=== Specialized ===
 
=== Specialized ===
 
* EMSegment Command Line
 
* EMSegment Command Line
* Robust Statistics Segmenter
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]
 
* BRAINSROIAuto
 
* BRAINSROIAuto
 
== Shape Analysis ==
 
== Shape Analysis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 
== Slicelets ==
 
== Slicelets ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]
 
== Surface Models ==
 
== Surface Models ==
* Surface Toolbox
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]
* Model To Label Map
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]
* Merge Models
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]
* Probe Volume With Model
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]
* Grayscale Model Maker
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]
* Label Map Smoothing
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]
* Model Maker
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]
 
== Testing ==
 
== Testing ==
 
* Self Tests
 
* Self Tests
Line 573: Line 573:
 
* CLI4Test
 
* CLI4Test
 
* Threshold Threading Test
 
* Threshold Threading Test
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]
 
* Performance Tests
 
* Performance Tests
 
* Slicer MRBTest
 
* Slicer MRBTest
Line 611: Line 611:
 
* BRAINSDWICleanup
 
* BRAINSDWICleanup
 
== Utilities ==
 
== Utilities ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]
 
* BRAINSStrip Rotation
 
* BRAINSStrip Rotation
 
* EMSegment Transform To New Format
 
* EMSegment Transform To New Format
* Data Store
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]
 
=== BRAINS ===
 
=== BRAINS ===
 
* BRAINSTransform Convert
 
* BRAINSTransform Convert
Line 622: Line 622:
 
* [http://slicer.vmtk.org/ Level Set Segmentation]
 
* [http://slicer.vmtk.org/ Level Set Segmentation]
 
== Wizards ==
 
== Wizards ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]
 
== Work in Progress ==
 
== Work in Progress ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
=== Converters ===
 
=== Converters ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]
 
=== Informatics ===
 
=== Informatics ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
==== TestCases ====
 
==== TestCases ====
 
* Reporting Self Test
 
* Reporting Self Test
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 
== XNATSlicer ==
 
== XNATSlicer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]
 
= Modules by contributing organization =
 
= Modules by contributing organization =
 
71 contributing organizations:
 
71 contributing organizations:
Line 708: Line 708:
 
* [[#while_at_GE|while at GE]]
 
* [[#while_at_GE|while at GE]]
 
== Asclepios INRIA ==
 
== Asclepios INRIA ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== AZE R&D ==
 
== AZE R&D ==
 
* JRC2013Vis
 
* JRC2013Vis
Line 716: Line 716:
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Brigham and Women's Hospital ==
 
== Brigham and Women's Hospital ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* test tractography display
 
* test tractography display
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== BWH ==
 
== BWH ==
 
* Add Many Markups Fiducial Test
 
* Add Many Markups Fiducial Test
 
* Change Tracker Self Test
 
* Change Tracker Self Test
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
 
* Markups In Views Self Test
 
* Markups In Views Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== BWH, SPL ==
 
== BWH, SPL ==
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
 
== BWH, SUMS ==
 
== BWH, SUMS ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== BWH/UAB ==
 
== BWH/UAB ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== CARMA ==
 
== CARMA ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 754: Line 754:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== CRTC ==
 
== CRTC ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== gatech ==
 
== gatech ==
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
 
== GE ==
 
== GE ==
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
 
== Georgia Tech ==
 
== Georgia Tech ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== IBM ==
 
== IBM ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
 
== Isomics ==
 
== Isomics ==
 
* Atlas Tests
 
* Atlas Tests
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
 
* Performance Tests
 
* Performance Tests
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* RSNA2012Prostate Demo
 
* RSNA2012Prostate Demo
 
* RSNAQuant Tutorial
 
* RSNAQuant Tutorial
 
* RSNAVis Tutorial
 
* RSNAVis Tutorial
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* scene Import2428
 
* scene Import2428
 
* Self Tests
 
* Self Tests
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Isomics Inc. ==
 
== Isomics Inc. ==
 
* DICOMDiffusion Volume Plugin
 
* DICOMDiffusion Volume Plugin
Line 840: Line 840:
 
* Threshold Threading Test
 
* Threshold Threading Test
 
== Isomics, pieper@isomics.com ==
 
== Isomics, pieper@isomics.com ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Kingston General Hospital ==
 
== Kingston General Hospital ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Kitware ==
 
== Kitware ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Kitware) ==
 
== Kitware) ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== MGH ==
 
== MGH ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== MGH, Boston ==
 
== MGH, Boston ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
 
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== MSC/NLM ==
 
== MSC/NLM ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
== Noware ==
 
== Noware ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
== Orobix ==
 
== Orobix ==
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== PerkLab at Queen's University ==
 
== PerkLab at Queen's University ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 
== PerkLab, Queen's ==
 
== PerkLab, Queen's ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
 
== PerkLab, Queen's University ==
 
== PerkLab, Queen's University ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== PMH ==
 
== PMH ==
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== PMH, Toronto ==
 
== PMH, Toronto ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Princess Margaret Cancer Centre ==
 
== Princess Margaret Cancer Centre ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Queen's ==
 
== Queen's ==
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Rt Import Self Test
 
* Dicom Rt Import Self Test
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* NAMIC Tutorial 2013June Self Test
 
* NAMIC Tutorial 2013June Self Test
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Queen's Universit ==
 
== Queen's Universit ==
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Queen's University ==
 
== Queen's University ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== Queen's University) Jaime Garcia-Guevara (Queen's University ==
 
== Queen's University) Jaime Garcia-Guevara (Queen's University ==
 
* Breach Warning Self Test
 
* Breach Warning Self Test
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
== RMP, PMH ==
 
== RMP, PMH ==
 
* Dicom Sro Import Plugin
 
* Dicom Sro Import Plugin
 
== SAIC-Frederick, NCI-Frederick ==
 
== SAIC-Frederick, NCI-Frederick ==
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== SBU ==
 
== SBU ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
== SCI Institute ==
 
== SCI Institute ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== Shiga University of Medical Science in Japan ==
 
== Shiga University of Medical Science in Japan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Shiga University of Medical Science, Japan, SPL ==
 
== Shiga University of Medical Science, Japan, SPL ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
== SINAPSE ==
 
== SINAPSE ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
== SNR ==
 
== SNR ==
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== SPL ==
 
== SPL ==
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* Reporting Self Test
 
* Reporting Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== SPL B&W Harvard ==
 
== SPL B&W Harvard ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== SPL, BWH ==
 
== SPL, BWH ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== SPL, BWH, UPenn ==
 
== SPL, BWH, UPenn ==
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
 
== SUMS ==
 
== SUMS ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Surgical Planning Lab ==
 
== Surgical Planning Lab ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
== UAB ==
 
== UAB ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== UHN, Toronto ==
 
== UHN, Toronto ==
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Uiowa ==
 
== Uiowa ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
Line 1,056: Line 1,056:
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== UNC ==
 
== UNC ==
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
 
== Univ of Michigan ==
 
== Univ of Michigan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Univ. of Iowa ==
 
== Univ. of Iowa ==
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
== University 'Magna Graecia' of Catanzaro ==
 
== University 'Magna Graecia' of Catanzaro ==
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== University College Cork ==
 
== University College Cork ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
== University of Heidelberg ==
 
== University of Heidelberg ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== University of Iowa ==
 
== University of Iowa ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== University of Iowa) and Andrey Fedorov (SPL ==
 
== University of Iowa) and Andrey Fedorov (SPL ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== UPenn ==
 
== UPenn ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
== Utah ==
 
== Utah ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== UVa ==
 
== UVa ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== UWA ==
 
== UWA ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
== WashU-St. Louis, dmarcus@wustl.edu ==
 
== WashU-St. Louis, dmarcus@wustl.edu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== while at GE ==
 
== while at GE ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
= Modules by contributing individual =
 
= Modules by contributing individual =
 
185 contributing individuals:
 
185 contributing individuals:
Line 1,289: Line 1,289:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Akila Viswanathan ==
 
== Akila Viswanathan ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Alan Morris ==
 
== Alan Morris ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,302: Line 1,302:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Alex Yarmakovich ==
 
== Alex Yarmakovich ==
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
== Alex Yarmarkovich ==
 
== Alex Yarmarkovich ==
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Ali Ghayoor ==
 
== Ali Ghayoor ==
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
== Alireza Mehrtash ==
 
== Alireza Mehrtash ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
== Allen Tannenbaum ==
 
== Allen Tannenbaum ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== Amelie Meyer ==
 
== Amelie Meyer ==
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Analysis Laboratory ==
 
== Analysis Laboratory ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Andinet Enquobahrie ==
 
== Andinet Enquobahrie ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
== Andras Lasso ==
 
== Andras Lasso ==
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== Andreas Freudling ==
 
== Andreas Freudling ==
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== Andrey Fedorov ==
 
== Andrey Fedorov ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* Change Tracker Self Test
 
* Change Tracker Self Test
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* DICOMSegmentation Plugin
 
* DICOMSegmentation Plugin
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
* Multi Volume Importer Plugin
 
* Multi Volume Importer Plugin
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* Reporting Self Test
 
* Reporting Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== Andriy Kot ==
 
== Andriy Kot ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Anonymous ==
 
== Anonymous ==
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
== Antonio Damato ==
 
== Antonio Damato ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Antonio Tristan Vega ==
 
== Antonio Tristan Vega ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== Anuja Sharma ==
 
== Anuja Sharma ==
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Arie Nakhmani ==
 
== Arie Nakhmani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== Atsushi Yamada ==
 
== Atsushi Yamada ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Beatriz Paniagua from Department of Orthodontics ==
 
== Beatriz Paniagua from Department of Orthodontics ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== Benjamin Long ==
 
== Benjamin Long ==
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
== Benjamin Yvernault ==
 
== Benjamin Yvernault ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Bill Lorensen ==
 
== Bill Lorensen ==
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
 
== Brad Davis ==
 
== Brad Davis ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Bradley Lowekamp ==
 
== Bradley Lowekamp ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
== Brian Zenger ==
 
== Brian Zenger ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,453: Line 1,453:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Carl-Fredrik Westin ==
 
== Carl-Fredrik Westin ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez ==
 
== Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== Casey B Goodlett ==
 
== Casey B Goodlett ==
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 
== Charles Marion ==
 
== Charles Marion ==
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
 
== Christian Baumgartner ==
 
== Christian Baumgartner ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Csaba Pinter ==
 
== Csaba Pinter ==
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Rt Import Self Test
 
* Dicom Rt Import Self Test
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* NAMIC Tutorial 2013June Self Test
 
* NAMIC Tutorial 2013June Self Test
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Dan Marcus ==
 
== Dan Marcus ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Daniel Blezek ==
 
== Daniel Blezek ==
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
 
== Daniel Haehn ==
 
== Daniel Haehn ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Danny Perry ==
 
== Danny Perry ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Demian Wassermann ==
 
== Demian Wassermann ==
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* test tractography display
 
* test tractography display
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
 
== Dinggang Shen ==
 
== Dinggang Shen ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== Dirk Padfield ==
 
== Dirk Padfield ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
 
== Dominik Meier ==
 
== Dominik Meier ==
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 
== e ==
 
== e ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,524: Line 1,524:
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Ethan Ulrich ==
 
== Ethan Ulrich ==
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== Eugene Kholmovski ==
 
== Eugene Kholmovski ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== ez ==
 
== ez ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== Fotis Drakopoulos ==
 
== Fotis Drakopoulos ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Francois Budin ==
 
== Francois Budin ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
 
== Franklin King ==
 
== Franklin King ==
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
 
== Greg Gardner ==
 
== Greg Gardner ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Greg Harris ==
 
== Greg Harris ==
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
== Greg Sharp ==
 
== Greg Sharp ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Gregory Sharp ==
 
== Gregory Sharp ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Guido Gerig ==
 
== Guido Gerig ==
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
== Guillaume Pernelle ==
 
== Guillaume Pernelle ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Hans J. Johnson ==
 
== Hans J. Johnson ==
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
== Hans Johnson ==
 
== Hans Johnson ==
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== hans-johnson -at- uiowa.edu ==
 
== hans-johnson -at- uiowa.edu ==
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
== http://www.psychiatry.uiowa.edu ==
 
== http://www.psychiatry.uiowa.edu ==
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
== i ==
 
== i ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Ipek Oguz ==
 
== Ipek Oguz ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Ivan Kolesov ==
 
== Ivan Kolesov ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== Jan Egger ==
 
== Jan Egger ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== Jayender Jagadeesan ==
 
== Jayender Jagadeesan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== Jean-Baptiste Berger ==
 
== Jean-Baptiste Berger ==
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Jean-Christophe Fillion-Robin ==
 
== Jean-Christophe Fillion-Robin ==
 
* CLI4Test
 
* CLI4Test
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Jennifer Andrea ==
 
== Jennifer Andrea ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Jessica Forbes ==
 
== Jessica Forbes ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
== Jim Miller ==
 
== Jim Miller ==
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
 
== Johan Andruejol ==
 
== Johan Andruejol ==
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
 
== John Evans ==
 
== John Evans ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
== Jonathan Bronson ==
 
== Jonathan Bronson ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== Josh Cates ==
 
== Josh Cates ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,659: Line 1,659:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Joy Matsui ==
 
== Joy Matsui ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== Julien Finet ==
 
== Julien Finet ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Julien Jomier ==
 
== Julien Jomier ==
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
 
== Junichi Tokuda ==
 
== Junichi Tokuda ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== K ==
 
== K ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,698: Line 1,698:
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Kent WIlliams ==
 
== Kent WIlliams ==
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
Line 1,707: Line 1,707:
 
== Kevin Wang ==
 
== Kevin Wang ==
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Sro Import Plugin
 
* Dicom Sro Import Plugin
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== Kilian Pohl ==
 
== Kilian Pohl ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
== Koichiro Murakami ==
 
== Koichiro Murakami ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
== Kyle Sunderl ==
 
== Kyle Sunderl ==
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== l ==
 
== l ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Lauren Barber ==
 
== Lauren Barber ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Lauren O'Donnell ==
 
== Lauren O'Donnell ==
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
 
== Laurent Chauvin ==
 
== Laurent Chauvin ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== Liang-Jia Zhu ==
 
== Liang-Jia Zhu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Liangjia Zhu ==
 
== Liangjia Zhu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
== Luca Antiga ==
 
== Luca Antiga ==
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Luis G. Torres ==
 
== Luis G. Torres ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
== Luping Fang ==
 
== Luping Fang ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== m ==
 
== m ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Marc Niethammer ==
 
== Marc Niethammer ==
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
 
== Marcel Prastawa prastawa@sci.utah.edu ==
 
== Marcel Prastawa prastawa@sci.utah.edu ==
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
Line 1,770: Line 1,770:
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== Markus Van Tol ==
 
== Markus Van Tol ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== Martin Styner ==
 
== Martin Styner ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Mason Winsauer ==
 
== Mason Winsauer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Matt Lougheed ==
 
== Matt Lougheed ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== Mattea Welch ==
 
== Mattea Welch ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Matthew Holden ==
 
== Matthew Holden ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== Matthew S. Holden ==
 
== Matthew S. Holden ==
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== Matthew Woehlke ==
 
== Matthew Woehlke ==
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
 
== Michael Jeulin-Lagarrigue ==
 
== Michael Jeulin-Lagarrigue ==
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
 
== Minjeong Kim ==
 
== Minjeong Kim ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== Nabgha Fahrat ==
 
== Nabgha Fahrat ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Neuro Image Resarch ==
 
== Neuro Image Resarch ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Nicholas Herlambang ==
 
== Nicholas Herlambang ==
 
* JRC2013Vis
 
* JRC2013Vis
 
== Nick Tustison ==
 
== Nick Tustison ==
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
 
== Nicole Aucoin ==
 
== Nicole Aucoin ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
 
* Add Many Markups Fiducial Test
 
* Add Many Markups Fiducial Test
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
 
* Markups In Views Self Test
 
* Markups In Views Self Test
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Nigel Goh ==
 
== Nigel Goh ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
== Nikos Chrisochoides ==
 
== Nikos Chrisochoides ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Olivier Clatz ==
 
== Olivier Clatz ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== p ==
 
== p ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Paolo Zaffino ==
 
== Paolo Zaffino ==
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Pat Marion ==
 
== Pat Marion ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
== Paul Mercea ==
 
== Paul Mercea ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== Pengdong Xiao ==
 
== Pengdong Xiao ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== Peter Black ==
 
== Peter Black ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== Peter Karasev ==
 
== Peter Karasev ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== Peter Savadjiev ==
 
== Peter Savadjiev ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Pierre Seroul ==
 
== Pierre Seroul ==
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
== Pietro Nardelli ==
 
== Pietro Nardelli ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
== Please direct questions or suggestions to http://groups.google.com/group/plastimatch ==
 
== Please direct questions or suggestions to http://groups.google.com/group/plastimatch ==
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Polina Goll ==
 
== Polina Goll ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Qing Pan ==
 
== Qing Pan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== R ==
 
== R ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,896: Line 1,896:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Raul San Jose ==
 
== Raul San Jose ==
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
 
== Rob MacLeod ==
 
== Rob MacLeod ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,910: Line 1,910:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Ron Kikinis ==
 
== Ron Kikinis ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== Ross Whitaker ==
 
== Ross Whitaker ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
 
== Ruifeng Chen ==
 
== Ruifeng Chen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== S ==
 
== S ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Salma Bengali ==
 
== Salma Bengali ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,950: Line 1,950:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== Sam Song ==
 
== Sam Song ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== Santiago Aja Fern ==
 
== Santiago Aja Fern ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== Sebastien Barr&eacute; ==
 
== Sebastien Barr&eacute; ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
 
== Sebastien Barre ==
 
== Sebastien Barre ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Shigeyuki Naka ==
 
== Shigeyuki Naka ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Soichiro Tani ==
 
== Soichiro Tani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Sonia Pujol ==
 
== Sonia Pujol ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
== Stefan Lienhard ==
 
== Stefan Lienhard ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Stephen Aylward ==
 
== Stephen Aylward ==
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
 
== Stephen R Aylward ==
 
== Stephen R Aylward ==
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
 
== Steve Pieper ==
 
== Steve Pieper ==
 
* Atlas Tests
 
* Atlas Tests
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
 
* DICOMDiffusion Volume Plugin
 
* DICOMDiffusion Volume Plugin
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMScalar Volume Plugin
 
* DICOMScalar Volume Plugin
 
* DICOMSlicer Data Bundle Plugin
 
* DICOMSlicer Data Bundle Plugin
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
* Performance Tests
 
* Performance Tests
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* RSNA2012Prostate Demo
 
* RSNA2012Prostate Demo
 
* RSNAQuant Tutorial
 
* RSNAQuant Tutorial
 
* RSNAVis Tutorial
 
* RSNAVis Tutorial
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* scene Import2428
 
* scene Import2428
 
* Self Tests
 
* Self Tests
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
 
* Slicer MRBTest
 
* Slicer MRBTest
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* Threshold Threading Test
 
* Threshold Threading Test
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Sunil Kumar ==
 
== Sunil Kumar ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Sylvain Bouix ==
 
== Sylvain Bouix ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Sylvain Gouttard ==
 
== Sylvain Gouttard ==
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== t ==
 
== t ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Tamas Ungi ==
 
== Tamas Ungi ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* Breach Warning Self Test
 
* Breach Warning Self Test
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== the University of North Carolina at Chapel Hill ==
 
== the University of North Carolina at Chapel Hill ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== Tina Kapur ==
 
== Tina Kapur ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Tobias Penzkofer ==
 
== Tobias Penzkofer ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== Tohru Tani ==
 
== Tohru Tani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== UNC Medical School ==
 
== UNC Medical School ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== UofM School Of Dentistry ==
 
== UofM School Of Dentistry ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== UofM School of Dentistry ==
 
== UofM School of Dentistry ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Vince Magnotta ==
 
== Vince Magnotta ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
Line 2,073: Line 2,073:
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
== Vincent Magnotta ==
 
== Vincent Magnotta ==
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
== Vinicius Boen ==
 
== Vinicius Boen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Vivek Narayan ==
 
== Vivek Narayan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
== Wendy Plesniak ==
 
== Wendy Plesniak ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Xiaodong Tao ==
 
== Xiaodong Tao ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
 
== Xiaofeng Liu ==
 
== Xiaofeng Liu ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== Xiaojun Chen ==
 
== Xiaojun Chen ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== y Wells ==
 
== y Wells ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Yanling Liu ==
 
== Yanling Liu ==
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== Yi Gao ==
 
== Yi Gao ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Yinglin Lee ==
 
== Yinglin Lee ==
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
== Yingxuan Zhu ==
 
== Yingxuan Zhu ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
== Yinpeng Li ==
 
== Yinpeng Li ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Yixun Liu ==
 
== Yixun Liu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Yogesh Rathi ==
 
== Yogesh Rathi ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Yong Zhang ==
 
== Yong Zhang ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
 
== Yumin Yuan ==
 
== Yumin Yuan ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Yundi Shi ==
 
== Yundi Shi ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
= Modules by type =
 
= Modules by type =
 
3 types:
 
3 types:
Line 2,142: Line 2,142:
 
== cli ==
 
== cli ==
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 2,169: Line 2,169:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
 
== loadable ==
 
== loadable ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Open IGTLink IF    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== scripted ==
 
== scripted ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
= Modules by extension =
 
= Modules by extension =
 
55 extensions:
 
55 extensions:
Line 2,445: Line 2,445:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
== AirwaySegmentation ==
 
== AirwaySegmentation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
== builtin ==
 
== builtin ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* Open IGTLink IF    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]   <small>(loadable, built-in)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Cardiac_MRI_Toolkit ==
 
== Cardiac_MRI_Toolkit ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 2,563: Line 2,563:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== CardiacAgastonMeasures ==
 
== CardiacAgastonMeasures ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
Line 2,572: Line 2,572:
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== CBC_3D_I2MConversion ==
 
== CBC_3D_I2MConversion ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
== ChangeTracker ==
 
== ChangeTracker ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== CleaverExtension ==
 
== CleaverExtension ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== CMFreg ==
 
== CMFreg ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== CornerAnnotation ==
 
== CornerAnnotation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== CurveMaker ==
 
== CurveMaker ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
 
== DiceComputation ==
 
== DiceComputation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
 
== DTIAtlasFiberAnalyzer ==
 
== DTIAtlasFiberAnalyzer ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== ErodeDilateLabel ==
 
== ErodeDilateLabel ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 
== FastGrowCutEffect ==
 
== FastGrowCutEffect ==
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
== FinslerTractography ==
 
== FinslerTractography ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== GelDosimetryAnalysis ==
 
== GelDosimetryAnalysis ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== GyroGuide ==
 
== GyroGuide ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== IASEM ==
 
== IASEM ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
== iGyne ==
 
== iGyne ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== ImageMaker ==
 
== ImageMaker ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
== IntensitySegmenter ==
 
== IntensitySegmenter ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== LAScarSegmenter ==
 
== LAScarSegmenter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
== LongitudinalPETCT ==
 
== LongitudinalPETCT ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== MABMIS ==
 
== MABMIS ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== MatlabBridge ==
 
== MatlabBridge ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
== MeshToLabelMap ==
 
== MeshToLabelMap ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
== MultidimData ==
 
== MultidimData ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== NeedleFinder ==
 
== NeedleFinder ==
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== OpenCAD ==
 
== OpenCAD ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
== PBNRR ==
 
== PBNRR ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== PercutaneousApproachAnalysis ==
 
== PercutaneousApproachAnalysis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
== PerkTutor ==
 
== PerkTutor ==
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== PETDICOMExtension ==
 
== PETDICOMExtension ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== PkModeling ==
 
== PkModeling ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
== PortPlacement ==
 
== PortPlacement ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
== PyDevRemoteDebug ==
 
== PyDevRemoteDebug ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 
== Reporting ==
 
== Reporting ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
== ResectionPlanner ==
 
== ResectionPlanner ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
 
== Scoliosis ==
 
== Scoliosis ==
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
== SegmentationAidedRegistration ==
 
== SegmentationAidedRegistration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== SlicerExtension-VMTK ==
 
== SlicerExtension-VMTK ==
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
Line 2,682: Line 2,682:
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== SlicerIGT ==
 
== SlicerIGT ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== SlicerRT ==
 
== SlicerRT ==
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== SlicerToKiwiExporter ==
 
== SlicerToKiwiExporter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
== SobolevSegmenter ==
 
== SobolevSegmenter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== SwissSkullStripper ==
 
== SwissSkullStripper ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
== TCIABrowser ==
 
== TCIABrowser ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
== ThingiverseBrowser ==
 
== ThingiverseBrowser ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
== TrackerStabilizer ==
 
== TrackerStabilizer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== UKFTractography ==
 
== UKFTractography ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== VolumeClip ==
 
== VolumeClip ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== WindowLevelEffect ==
 
== WindowLevelEffect ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== XNATSlicer ==
 
== XNATSlicer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
= Extensions by name =
 
= Extensions by name =
 
54 extensions:
 
54 extensions:
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM]
+
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD]
+
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://www.perktutor.org/ Perk Tutor]
+
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner]
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
= Extensions by category =
 
= Extensions by category =
 
25 categories:
 
25 categories:
Line 2,830: Line 2,830:
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
== Developer Tools ==
 
== Developer Tools ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
 
== Diffusion ==
 
== Diffusion ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
 
== Editor Effects ==
 
== Editor Effects ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
== Exporter ==
 
== Exporter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== Filtering ==
 
== Filtering ==
 
=== Morphology ===
 
=== Morphology ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
 
== IGT ==
 
== IGT ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner]
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
 
== Informatics ==
 
== Informatics ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
 
== Mesh Generation ==
 
== Mesh Generation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 
== Microscopy ==
 
== Microscopy ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM]
+
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
 
== Multidimensional data ==
 
== Multidimensional data ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 
== Quantification ==
 
== Quantification ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Radiotherapy ==
 
== Radiotherapy ==
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
== Registration ==
 
== Registration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Remote ==
 
== Remote ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Scoliosis ==
 
== Scoliosis ==
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
 
== Segmentation ==
 
== Segmentation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD]
+
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
== Shape Analysis ==
 
== Shape Analysis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 
== Tractography ==
 
== Tractography ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Training ==
 
== Training ==
* [http://www.perktutor.org/ Perk Tutor]
+
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 
== Utilities ==
 
== Utilities ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
 
== Wizards ==
 
== Wizards ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 
= Extensions by contributing organization =
 
= Extensions by contributing organization =
 
54 contributing organizations:
 
54 contributing organizations:
Line 2,958: Line 2,958:
 
* [[#yogesh.40bwh.harvard.edu|yogesh@bwh.harvard.edu]]
 
* [[#yogesh.40bwh.harvard.edu|yogesh@bwh.harvard.edu]]
 
== Asclepios INRIA) and Nikos Chrisochoides (CRTC ==
 
== Asclepios INRIA) and Nikos Chrisochoides (CRTC ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Boston Childrens Hospital ==
 
== Boston Childrens Hospital ==
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
 
== Brigham and Women's Hospital ==
 
== Brigham and Women's Hospital ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 
== BWH ==
 
== BWH ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD]
+
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 
== BWH & MGH ==
 
== BWH & MGH ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
Line 2,982: Line 2,982:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China ==
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Crisalix ==
 
== Crisalix ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== CRTC ==
 
== CRTC ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Department of Neurosurgery, PLA General Hospital, Beijing, China ==
 
== Department of Neurosurgery, PLA General Hospital, Beijing, China ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Department of Orthodontics, UNC ==
 
== Department of Orthodontics, UNC ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 
== GE ==
 
== GE ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== GE GLobal Research ==
 
== GE GLobal Research ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
== GT ==
 
== GT ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Isomics ==
 
== Isomics ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Kitware ==
 
== Kitware ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== Massachusetts General Hospital ==
 
== Massachusetts General Hospital ==
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
== Moka Creative LLC, Washington University in St. Louis ==
 
== Moka Creative LLC, Washington University in St. Louis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== NIRAL, UNC ==
 
== NIRAL, UNC ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 
== Noware ==
 
== Noware ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Orobix ==
 
== Orobix ==
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
 
== PerkLab at Queen's University ==
 
== PerkLab at Queen's University ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
 
== PerkLab, Queen's ==
 
== PerkLab, Queen's ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 
== PerkLab, Queen's University ==
 
== PerkLab, Queen's University ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
== PMH ==
 
== PMH ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 
== Queen's University ==
 
== Queen's University ==
* [http://www.perktutor.org/ Perk Tutor]
+
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner]
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
== SBU ==
 
== SBU ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
== SCI Institute ==
 
== SCI Institute ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 
== Shiga University of Medical Science, Japan ==
 
== Shiga University of Medical Science, Japan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
 
== Shiga University of Medical Science, Japan, SPL ==
 
== Shiga University of Medical Science, Japan, SPL ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
 
== SPL ==
 
== SPL ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
== SPL and BWH ==
 
== SPL and BWH ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 
== SPL B&W Harvard ==
 
== SPL B&W Harvard ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== SRI ==
 
== SRI ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Stony Brook University ==
 
== Stony Brook University ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
== Surgical Planning Lab ==
 
== Surgical Planning Lab ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
== UAB ==
 
== UAB ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
== UIowa ==
 
== UIowa ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
== UNC ==
 
== UNC ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
 
== Univ of Michigan ==
 
== Univ of Michigan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 
== University College Cork ==
 
== University College Cork ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
 
== University of Bern ==
 
== University of Bern ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== University of Heidelberg ==
 
== University of Heidelberg ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
== University of Iowa ==
 
== University of Iowa ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
Line 3,091: Line 3,091:
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
 
== Utah ==
 
== Utah ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== UWA ==
 
== UWA ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 
== Washington University in St. Louis ==
 
== Washington University in St. Louis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== yogesh@bwh.harvard.edu ==
 
== yogesh@bwh.harvard.edu ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
= Extensions by contributing individual =
 
= Extensions by contributing individual =
 
125 contributing individuals:
 
125 contributing individuals:
Line 3,218: Line 3,218:
 
* [[#Yundi_Shi|Yundi Shi]]
 
* [[#Yundi_Shi|Yundi Shi]]
 
== Akila Viswanathan ==
 
== Akila Viswanathan ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Alan Morris ==
 
== Alan Morris ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Alex Yarmarkovich ==
 
== Alex Yarmarkovich ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
== Alireza Mehrtash ==
 
== Alireza Mehrtash ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 
== Allen Tannenbaum ==
 
== Allen Tannenbaum ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
== Andinet Enquobahrie ==
 
== Andinet Enquobahrie ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
 
== Andras Lasso ==
 
== Andras Lasso ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
== Andre Mastmeyer ==
 
== Andre Mastmeyer ==
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Andrey Fedorov ==
 
== Andrey Fedorov ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
== Andriy Fedorov ==
 
== Andriy Fedorov ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Andriy Kot ==
 
== Andriy Kot ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Antonio Damato ==
 
== Antonio Damato ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Antonio Tristan-Vega ==
 
== Antonio Tristan-Vega ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
== Arie Nakhmani ==
 
== Arie Nakhmani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
== Arnaud Gelas ==
 
== Arnaud Gelas ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Atsushi Yamada ==
 
== Atsushi Yamada ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
 
== Beatriz Paniagua ==
 
== Beatriz Paniagua ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 
== Bill Lorensen ==
 
== Bill Lorensen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Bradley Lowekamp ==
 
== Bradley Lowekamp ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM]
+
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
 
== Brig Bagley ==
 
== Brig Bagley ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 
== Carl-Fredrik Westin ==
 
== Carl-Fredrik Westin ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Christian Baumgartner ==
 
== Christian Baumgartner ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Csaba Pinter ==
 
== Csaba Pinter ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
== Dan Marcus ==
 
== Dan Marcus ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Daniel Haehn ==
 
== Daniel Haehn ==
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
 
== Danny Perry ==
 
== Danny Perry ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Demian Wasssermann ==
 
== Demian Wasssermann ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
== Dinggang Shen ==
 
== Dinggang Shen ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
== Ethan Ulrich ==
 
== Ethan Ulrich ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
Line 3,303: Line 3,303:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
== Fotis Drakopoulos ==
 
== Fotis Drakopoulos ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Francois Budin ==
 
== Francois Budin ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 
== Franklin King ==
 
== Franklin King ==
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
 
== Greg Gardner ==
 
== Greg Gardner ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Greg Sharp ==
 
== Greg Sharp ==
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
== Guillaume Pernelle ==
 
== Guillaume Pernelle ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Hans Johnson ==
 
== Hans Johnson ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Ipek Oguz ==
 
== Ipek Oguz ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Ivan Kolesov ==
 
== Ivan Kolesov ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
== Jan Egger ==
 
== Jan Egger ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Jayender Jagadeesan ==
 
== Jayender Jagadeesan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD]
+
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 
== Jean-Christophe Fillion-Robin ==
 
== Jean-Christophe Fillion-Robin ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== Jennifer Andrea ==
 
== Jennifer Andrea ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
Line 3,343: Line 3,343:
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
== Jiashu Zhang ==
 
== Jiashu Zhang ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Jim Miller ==
 
== Jim Miller ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Jonathan Bronson ==
 
== Jonathan Bronson ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 
== Josh Cates ==
 
== Josh Cates ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Julien Finet ==
 
== Julien Finet ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
 
== Junichi Tokuda ==
 
== Junichi Tokuda ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 
== Karl Fritscher ==
 
== Karl Fritscher ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Kent Williams ==
 
== Kent Williams ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Kevin Wang ==
 
== Kevin Wang ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
* [http://slicerrt.org Slicer RT]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
== Kilian Pohl ==
 
== Kilian Pohl ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 
== Koichiro Murakami ==
 
== Koichiro Murakami ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
 
== Lauren Barber ==
 
== Lauren Barber ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Laurent Chauvin ==
 
== Laurent Chauvin ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 
== Liang-Jia Zhu ==
 
== Liang-Jia Zhu ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
Line 3,384: Line 3,384:
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
== Luca Antiga ==
 
== Luca Antiga ==
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
 
== Luis G. Torres ==
 
== Luis G. Torres ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
 
== Luping Fang ==
 
== Luping Fang ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Mahnaz Maddah ==
 
== Mahnaz Maddah ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Manson Winsauer ==
 
== Manson Winsauer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 
== Marcel Prastawa ==
 
== Marcel Prastawa ==
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
 
== Martin Styner ==
 
== Martin Styner ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Matt Lougheed ==
 
== Matt Lougheed ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner]
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
== Mattea Welch ==
 
== Mattea Welch ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
== Matthew Holden ==
 
== Matthew Holden ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 
== Matthew S. Holden ==
 
== Matthew S. Holden ==
* [http://www.perktutor.org/ Perk Tutor]
+
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 
== Mauricio Reyes ==
 
== Mauricio Reyes ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Ming-ching Chang ==
 
== Ming-ching Chang ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Minjeong Kim ==
 
== Minjeong Kim ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
== Nabgha Fahrat ==
 
== Nabgha Fahrat ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Nicole Aucoin ==
 
== Nicole Aucoin ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
== Nigel Goh ==
 
== Nigel Goh ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 
== Nikos Chrisochoides ==
 
== Nikos Chrisochoides ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
 
== Olivier Clatz ==
 
== Olivier Clatz ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Pat Marion ==
 
== Pat Marion ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== Patricio Vela ==
 
== Patricio Vela ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Paul Mercea ==
 
== Paul Mercea ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
== Pengdong Xiao ==
 
== Pengdong Xiao ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 
== Peter Black ==
 
== Peter Black ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 
== Peter Karasev ==
 
== Peter Karasev ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Peter Savadjiev ==
 
== Peter Savadjiev ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Pietro Nardelli ==
 
== Pietro Nardelli ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
 
== Qing Pan ==
 
== Qing Pan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Rick Herrick ==
 
== Rick Herrick ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Rob MacLeod ==
 
== Rob MacLeod ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Ron Kikinis ==
 
== Ron Kikinis ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
== Ruifeng Chen ==
 
== Ruifeng Chen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== Ryan Eckbo ==
 
== Ryan Eckbo ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== S ==
 
== S ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Salma Bengali ==
 
== Salma Bengali ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 
== Sam Song ==
 
== Sam Song ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Stefan Bauer ==
 
== Stefan Bauer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Stefan Lienhard ==
 
== Stefan Lienhard ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Steve Pieper ==
 
== Steve Pieper ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
* [http://slicer.vmtk.org/ VMTK]
 
* [http://slicer.vmtk.org/ VMTK]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Sunil Kumar ==
 
== Sunil Kumar ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
== Sylvain Bouix ==
 
== Sylvain Bouix ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Tamas Ungi ==
 
== Tamas Ungi ==
* [http://www.perktutor.org/ Perk Tutor]
+
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
* [http://www.slicerigt.org Slicer IGT]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 
== Thomas Fejes ==
 
== Thomas Fejes ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
== Tina Kapur ==
 
== Tina Kapur ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Tobias Penzkofer ==
 
== Tobias Penzkofer ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Vinicius Boen ==
 
== Vinicius Boen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg]
+
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 
== Vivek Narayan ==
 
== Vivek Narayan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD]
+
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
 
== Xiaofeng Liu ==
 
== Xiaofeng Liu ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS]
+
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
== Xiaojun Chen ==
 
== Xiaojun Chen ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Xiaolei Chen ==
 
== Xiaolei Chen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
== y Wells ==
 
== y Wells ==
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
== Yi Gao ==
 
== Yi Gao ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
== Yingxuan Zhu ==
 
== Yingxuan Zhu ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Yinpeng Li ==
 
== Yinpeng Li ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Yixun Liu ==
 
== Yixun Liu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Yogesh Rathi ==
 
== Yogesh Rathi ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Yundi Shi ==
 
== Yundi Shi ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]

Revision as of 07:43, 25 December 2014

Home < Documentation < 4.4 < ModuleExtensionListing



List of extensions known to be broken

Modules by name

215 modules:

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport
  • DTIexport

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

Slicelets

Surface Models

Testing

  • Self Tests
  • CLIROITest
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test

SlicerRT Tests

  • NAMIC Tutorial 2013June Self Test
  • Dicom Rt Import Self Test

TestCases

  • Slice Link Logic
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • View Controllers Slice Interpolation Bug1926
  • Charting
  • Scene Performance
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Neurosurgical Planning Tutorial Markups Self Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Slicer4Minute
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup

Utilities

BRAINS

  • BRAINSTransform Convert

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

XNATSlicer

Modules by contributing organization

71 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Boston Children's Hospital

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, pieper@isomics.com

Kingston General Hospital

Kitware

Kitware)

MGH

MGH, Boston

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

PMH, Toronto

Princess Margaret Cancer Centre

Queen's

Queen's Universit

Queen's University

Queen's University) Jaime Garcia-Guevara (Queen's University

  • Breach Warning Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

RMP, PMH

  • Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science in Japan

Shiga University of Medical Science, Japan, SPL

SINAPSE

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

SUMS

Surgical Planning Lab

UAB

UHN, Toronto

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

University 'Magna Graecia' of Catanzaro

University College Cork

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing individual

185 contributing individuals:

/

  • Dicom Rt Import Plugin

a

  • Dicom Rt Import Plugin

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)
  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

Amelie Meyer

Analysis Laboratory

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Anuja Sharma

Arie Nakhmani

Atsushi Yamada

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

Benjamin Yvernault

Bill Lorensen

Brad Davis

  • EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Brian Zenger

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

c

  • Dicom Rt Import Plugin

Carl-Fredrik Westin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

Charles Marion

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dinggang Shen

Dirk Padfield

Dominik Meier

e

  • Dicom Rt Import Plugin

er

Ethan Ulrich

Eugene Kholmovski

ez

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Harris

Greg Sharp

Gregory Sharp

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Hans Johnson

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

i

  • Dicom Rt Import Plugin

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

Johan Andruejol

  • Units (loadable, built-in)

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

K

  • Dicom Rt Import Plugin

Kent Williams

Kent WIlliams

  • BRAINSStrip Rotation (cli, built-in)

Kevin Alex

Kevin Wang

Kilian Pohl

Koichiro Murakami

Kyle Sunderl

l

  • Dicom Rt Import Plugin

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

m

  • Dicom Rt Import Plugin

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Martin Styner

Mason Winsauer

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Neuro Image Resarch

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

p

  • Dicom Rt Import Plugin

Paolo Zaffino

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pierre Seroul

Pietro Nardelli

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

Polina Goll

  • EMSegment Command Line (cli, built-in)

Qing Pan

R

  • Dicom Rt Import Plugin

r

  • Dicom Rt Import Plugin

Raul San Jose

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

S

Salma Bengali

Sam Song

Santiago Aja Fern

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stefan Lienhard

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Sylvain Gouttard

t

  • Dicom Rt Import Plugin

Tamas Ungi

the University of North Carolina at Chapel Hill

Tina Kapur

Tobias Penzkofer

Tohru Tani

UNC Medical School

UofM School Of Dentistry

UofM School of Dentistry

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

Vinicius Boen

Vivek Narayan

Wendy Plesniak

Xiaodong Tao

Xiaofeng Liu

Xiaojun Chen

y Wells

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yong Zhang

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Yundi Shi

Modules by type

3 types:

cli

loadable

scripted

Modules by extension

55 extensions:

ABC

  • ABC (cli, bundled in ABC extension)

AirwaySegmentation

builtin

Cardiac_MRI_Toolkit

CardiacAgastonMeasures

CarreraSlice

CBC_3D_I2MConversion

ChangeTracker

CleaverExtension

CMFreg

CornerAnnotation

CurveMaker

DiceComputation

DTIAtlasFiberAnalyzer

ErodeDilateLabel

FastGrowCutEffect

FinslerTractography

GelDosimetryAnalysis

GyroGuide

IASEM

iGyne

ImageMaker

IntensitySegmenter

LAScarSegmenter

LongitudinalPETCT

MABMIS

MatlabBridge

MeshToLabelMap

MultidimData

NeedleFinder

OpenCAD

PBNRR

PercutaneousApproachAnalysis

PerkTutor

PETDICOMExtension

PkModeling

PortPlacement

PyDevRemoteDebug

Reporting

ResectionPlanner

Scoliosis

SegmentationAidedRegistration

SlicerExtension-VMTK

SlicerIGT

SlicerRT

SlicerToKiwiExporter

SobolevSegmenter

SwissSkullStripper

TCIABrowser

ThingiverseBrowser

TrackerStabilizer

UKFTractography

VolumeClip

WindowLevelEffect

XNATSlicer

Extensions by name

54 extensions:

Extensions by category

25 categories:

Cardiac

Cardiac MRI toolkit

Converters

Developer Tools

Diffusion

Editor Effects

Exporter

Filtering

Morphology

IGT

Informatics

Mesh Generation

Microscopy

Multidimensional data

Quantification

Radiotherapy

Registration

Remote

Scoliosis

Segmentation

Shape Analysis

Tractography

Training

Utilities

Vascular Modeling Toolkit

Wizards

Extensions by contributing organization

54 contributing organizations:

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing individual

125 contributing individuals:

Akila Viswanathan

Alan Morris

Alex Yarmarkovich

Alireza Mehrtash

Allen Tannenbaum

Andinet Enquobahrie

Andras Lasso

Andre Mastmeyer

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Damato

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Carl-Fredrik Westin

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jiashu Zhang

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Junichi Tokuda

Karl Fritscher

Kent Williams

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nabgha Fahrat

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Patricio Vela

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pietro Nardelli

Qing Pan

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Ryan Eckbo

S

Salma Bengali

Sam Song

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Tina Kapur

Tobias Penzkofer

Vinicius Boen

Vivek Narayan

Xiaofeng Liu

Xiaojun Chen

Xiaolei Chen

y Wells

Yi Gao

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yundi Shi