Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev ee4b87b). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
(This page has been updated using script slicer_wiki_extension_module_listing.py (rev ee4b87b). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
 
<span id='Modules_by_category_CMF_Registration'></span>
 
<span id='Modules_by_category_CMF_Registration'></span>
 
== CMF Registration ==
 
== CMF Registration ==
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<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 
=== Voxelbase Registration ===
 
=== Voxelbase Registration ===
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
 
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
<span id='Modules_by_category_Converters'></span>
 
<span id='Modules_by_category_Converters'></span>
 
== Converters ==
 
== Converters ==
 
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
 
 
<span id='Modules_by_category_Developer_Tools'></span>
 
<span id='Modules_by_category_Developer_Tools'></span>
 
== Developer Tools ==
 
== Developer Tools ==
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=== Editor Extensions ===
 
=== Editor Extensions ===
 
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
=== Matlab ===
 
=== Matlab ===
 +
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
 
<span id='Modules_by_category_Diffusion'></span>
 
<span id='Modules_by_category_Diffusion'></span>
 
== Diffusion ==
 
== Diffusion ==
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=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
 
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
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* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 +
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
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=== Tractography ===
 
=== Tractography ===
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
 
<span id='Modules_by_category_Editor_Effects'></span>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
== Editor Effects ==
 
== Editor Effects ==
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* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
=== Denoising ===
 
=== Denoising ===
 
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
=== Morphology ===
 
=== Morphology ===
 
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 +
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_IGT'></span>
 
<span id='Modules_by_category_IGT'></span>
 
== IGT ==
 
== IGT ==
 
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
 
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 +
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
Line 248: Line 249:
 
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
 
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
Line 275: Line 275:
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
==== Diffusion Data Conversion ====
 
==== Diffusion Data Conversion ====
 +
* DTIimport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
* DTIimport    <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
=== Filtering ===
 
=== Filtering ===
Line 301: Line 301:
 
<span id='Modules_by_category_Microscopy'></span>
 
<span id='Modules_by_category_Microscopy'></span>
 
== Microscopy ==
 
== Microscopy ==
 +
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
 
<span id='Modules_by_category_Multidimensional_data'></span>
 
<span id='Modules_by_category_Multidimensional_data'></span>
 
== Multidimensional data ==
 
== Multidimensional data ==
Line 335: Line 335:
 
== Quantification ==
 
== Quantification ==
 
* [[Documentation/4.4/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
 
* [[Documentation/4.4/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
Line 341: Line 340:
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[Documentation/4.4/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
 
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
Line 357: Line 356:
 
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
Line 362: Line 362:
 
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
Line 370: Line 369:
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
 
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
Line 383: Line 381:
 
<span id='Modules_by_category_Segmentation'></span>
 
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
* [[Documentation/4.4/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 +
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
Line 392: Line 391:
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
Line 417: Line 414:
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
 +
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Testing'></span>
 
<span id='Modules_by_category_Testing'></span>
 
== Testing ==
 
== Testing ==
Line 435: Line 432:
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
=== IGT Tests ===
 
=== IGT Tests ===
 +
* Breach Warning Self Test
 
* Watchdog Self Test
 
* Watchdog Self Test
* Breach Warning Self Test
 
 
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 
=== SlicerRT Tests ===
 
=== SlicerRT Tests ===
Line 449: Line 446:
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* test tractography display
 
* test tractography display
* Subject Hierarchy Core Plugins Self Test
 
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* label Toggle Bug2049
 
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
Line 464: Line 459:
 
* RSNA2012Prostate Demo
 
* RSNA2012Prostate Demo
 
* Add Many Markups Fiducial Test
 
* Add Many Markups Fiducial Test
 +
* Colors Scalar Bar Self Test
 
* Markups In Views Self Test
 
* Markups In Views Self Test
* Colors Scalar Bar Self Test
+
* Subject Hierarchy Core Plugins Self Test
* Slicer4Minute    <small>(scripted, built-in)</small>
 
 
* Change Tracker Self Test
 
* Change Tracker Self Test
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
 +
* Slicer4Minute    <small>(scripted, built-in)</small>
 +
* label Toggle Bug2049
 
<span id='Modules_by_category_Unspecified'></span>
 
<span id='Modules_by_category_Unspecified'></span>
 
== Unspecified ==
 
== Unspecified ==
Line 484: Line 481:
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
 +
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
<span id='Modules_by_category_Wizards'></span>
 
<span id='Modules_by_category_Wizards'></span>
Line 505: Line 502:
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 
= Modules by name =
 
= Modules by name =
226 modules:
+
224 modules:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
Line 581: Line 578:
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
* [[Documentation/4.4/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
Line 624: Line 620:
 
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
 
 
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>

Revision as of 13:52, 13 July 2015

Home < Documentation < 4.4 < ModuleExtensionListing



List of extensions known to be broken

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport (cli, built-in)
  • DTIexport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

Slicelets

Surface Models

Testing

  • Self Tests
  • CLIROITest (cli, built-in)
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test
  • Watchdog Self Test

SlicerRT Tests

TestCases

  • Slice Link Logic (scripted, built-in)
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close (scripted, built-in)
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • Charting (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Neurosurgical Planning Tutorial Markups Self Test
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • View Controllers Slice Interpolation Bug1926
  • Slicer4Minute (scripted, built-in)
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup (cli, built-in)

Utilities

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

Modules by name

224 modules: