Documentation/4.4/ModuleExtensionListing

• Modules by category
• Modules by name
• Modules by contributing organization
• Modules by contributing individual
• Modules by type
• Modules by extension
• Extensions by category
• Extensions by name
• Extensions by contributing organization
• Extensions by contributing individual

List of extensions known to be broken

Modules by category

37 categories:

• BRAINS
  • Label Statistics
• Cardiac MRI Toolkit
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Fiber Analysis
  • Tractography
• Editor Effects
• Editor Effect
• Endoscopy
• Examples
• Exporter
• File
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Mesh Generation
• Mesh Generation
• Microscopy
• Multidimensional data
• Multi Volume Support
• Perk Tutor
• Plastimatch
  • Registration
  • Utilities
• Quantification
  • Change Quantification
• Radiotherapy
• Registration
  • Specialized
• Segmentation
  • Specialized
• Shape Analysis
• Slicelets
• Surface Models
• Testing
  • IGT Tests
  • Slicer RT Tests
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Vascular Modeling Toolkit
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases
• XNATSlicer

BRAINS

LabelStatistics

• BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)

CMF Registration

• Apply Matrix (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)

Voxelbase Registration

• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)

Converters

• Vector To Scalar Volume (scripted, built-in)
• Crop Volume (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• Create DICOMSeries (cli, built-in)

Developer Tools

• Event Broker
• Execution Model Tour (cli, built-in)
• Double Arrays (loadable, built-in)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Cameras (loadable, built-in)
• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• Extension Wizard (scripted, built-in)
• Image Maker (cli, bundled in Image Maker extension)

DICOM Plugins

• DICOMLongitudinal PETCTPlugin
• DICOMRWVMPlugin
• Multi Volume Importer Plugin
• DICOMPETSUVPlugin
• Dicom Rt Import Plugin
• DICOMDiffusion Volume Plugin
• DICOMSegmentation Plugin
• Dicom Sro Import Plugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin

Editor Extensions

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

Matlab

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

Diffusion

• Tractography Display (loadable, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)

Diffusion Data Conversion

• DWIConvert (cli, built-in)

Diffusion Tensor Images

• Resample DTIVolume (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Diffusion Weighted Images

• DWIRician LMMSEFilter (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Diffusion Weighted Volume Masking (cli, built-in)

FiberAnalysis

• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Tractography

• Fiber Bundle To Label Map (scripted, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• Fiber Bundle Label Select (cli, built-in)

Editor Effects

• Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

• Endoscopy (scripted, built-in)

Examples

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

File

• Convert VTK (cli, bundled in UKFTractography extension)

Filtering

• Extract Skeleton (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Simple Filters (scripted, built-in)
• Image Label Combine (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Histogram Matching (cli, built-in)
• Checker Board Filter (cli, built-in)

Arithmetic

• Multiply Scalar Volumes (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Mask Scalar Volume (cli, built-in)

Denoising

• Gradient Anisotropic Diffusion (cli, built-in)
• Median Image Filter (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)

Morphology

• Grayscale Fill Hole Image Filter (cli, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Grayscale Grind Peak Image Filter (cli, built-in)

IGT

• Resection Volume (scripted, bundled in Resection Planner extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Open IGTLink IF (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)

Informatics

• Annotations (loadable, built-in)
• Markups (loadable, built-in)
• Units (loadable, built-in)
• DICOM (scripted, built-in)
• Sample Data (scripted, built-in)
• Subject Hierarchy (loadable, built-in)
• Data (loadable, built-in)
• Colors (loadable, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Legacy

Converters

• BSpline To Deformation Field (cli, built-in)

Diffusion

Denoising

• DWIUnbiased Non Local Means Filter (cli, built-in)

Diffusion Data Conversion

• DTIimport (cli, built-in)
• DTIexport (cli, built-in)

Filtering

• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)

Registration

• Test Grid Transform Registration (cli, built-in)
• Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

• Diffusion Tensor Test (cli, built-in)

Mesh Generation

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

• Bin Shrink (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)

Multidimensional data

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

MultiVolume Support

• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)

Perk Tutor

• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)

Plastimatch

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)

Registration

• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

• Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Data Probe (scripted, built-in)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)

ChangeQuantification

• Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiotherapy

• Contour Comparison (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)

Registration

• BRAINSResample (cli, built-in)
• Transforms (loadable, built-in)
• BRAINSResize (cli, built-in)
• BRAINSFit (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)

Specialized

• ACPCTransform (cli, built-in)
• Fiducial Registration (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)
• BRAINSDemon Warp (cli, built-in)
• Reformat (loadable, built-in)

Segmentation

• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• ABC (cli, bundled in ABC extension)
• EMSegment Quick (loadable, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• EMSegment (loadable, built-in)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Specialized

• EMSegment Command Line (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• BRAINSROIAuto (cli, built-in)

Shape Analysis

• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)

Slicelets

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

Surface Models

• Surface Toolbox (scripted, built-in)
• Model To Label Map (cli, built-in)
• Merge Models (cli, built-in)
• Probe Volume With Model (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Model Maker (cli, built-in)

Testing

• Self Tests
• CLIROITest (cli, built-in)
• CLI4Test
• Threshold Threading Test
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Performance Tests
• Slicer MRBTest

IGT Tests

• Breach Warning Self Test
• Watchdog Self Test

SlicerRT Tests

• Dicom Rt Import Self Test
• Batch Contour Conversion (scripted, bundled in Slicer RT extension)

TestCases

• Slice Link Logic (scripted, built-in)
• Atlas Tests
• RSNAQuant Tutorial
• Volume Rendering Scene Close (scripted, built-in)
• test tractography display
• slicer Close Crash Bug2590
• Subject Hierarchy Generic Self Test
• Charting (scripted, built-in)
• Scene Performance (scripted, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• Markups In Compare Viewers Self Test
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
• fiber visibility crash2438
• scene Import2428
• RSNAVis Tutorial
• JRC2013Vis
• RSNA2012Prostate Demo
• Add Many Markups Fiducial Test
• Colors Scalar Bar Self Test
• Markups In Views Self Test
• Subject Hierarchy Core Plugins Self Test
• Change Tracker Self Test
• Fiducial Layout Switch Bug1914
• View Controllers Slice Interpolation Bug1926
• Slicer4Minute (scripted, built-in)
• label Toggle Bug2049

Unspecified

• BRAINSDWICleanup (cli, built-in)

Utilities

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• BRAINSStrip Rotation (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Data Store (loadable, built-in)

BRAINS

• BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

• Vesselness Filtering (scripted, bundled in VMTK extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)

Wizards

• Compare Volumes (scripted, bundled in CMFreg extension)
• Change Tracker (scripted, bundled in Change Tracker extension)

Work in Progress

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Converters

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

Informatics

• Reporting (loadable, bundled in Reporting extension)

TestCases

• Reporting Self Test
• Label To DICOMSEGConverter Self Test

XNATSlicer

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by name

218 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Annotations (loadable, built-in)
• Apply Matrix (cli, bundled in CMFreg extension)
• Beams (loadable, bundled in Slicer RT extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStrip Rotation (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Cast Scalar Volume (cli, built-in)
• Centerline Computation (scripted, bundled in VMTK extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Colors (loadable, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Convert VTK (cli, bundled in UKFTractography extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Create DICOMSeries (cli, built-in)
• Create Models (loadable, bundled in Slicer IGT extension)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Downsize (cli, bundled in CMFreg extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiducial Registration (cli, built-in)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Image Label Combine (cli, built-in)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Isodose (loadable, bundled in Slicer RT extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Model Maker (cli, built-in)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Non Growing (cli, bundled in CMFreg extension)
• Open IGTLink IF (loadable, built-in)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Orient Scalar Volume (cli, built-in)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• PBNRR (cli, bundled in PBNRR extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Perform Metric Test (cli, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
• Plastimatch Py (loadable, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Probe Volume With Model (cli, built-in)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resection Volume (scripted, bundled in Resection Planner extension)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Scene Views (loadable, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Threshold Scalar Volume (cli, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)
• View Controllers (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering (loadable, built-in)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Welcome (loadable, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by contributing organization

73 contributing organizations:

• Asclepios INRIA
• AZE R&D
• Boston Children's Hospital
• Brigham and Women's Hospital
• BWH
• BWH, SPL
• BWH, SUMS
• BWH/UAB
• CARMA
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
• CRTC
• gatech
• GE
• Georgia Tech
• IBM
• Isomics
• Isomics Inc.
• Isomics, pieper@isomics.com
• Kingston General Hospital
• Kitware
• Kitware)
• MGH
• MGH, Boston
• Moka Creative, LLC, kumar.sunil.p@gmail.com
• MSC/NLM
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's Universit
• Perk Lab, Queen's University
• PMH
• PMH, Toronto
• Princess Margaret Cancer Centre
• Queen's
• Queen's Universit
• Queen's University
• Queen's University) Jaime Garcia-Guevara (Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• RMP, PMH
• SAIC-Frederick, NCI-Frederick
• SBU
• SCI Institute
• Shiga University of Medical Science
• Shiga University of Medical Science in Japan
• Shiga University of Medical Science, Japan, SPL
• SINAPSE
• SNR
• SPL
• SPL B&W Harvard
• SPL, BWH
• SPL, BWH, UPenn
• SUMS
• Surgical Planning Lab
• UAB
• UHN, Toronto
• Uiowa
• UIowa
• UNC
• Univ of Michigan
• Univ. of Iowa
• University 'Magna Graecia' of Catanzaro
• University College Cork
• University of Heidelberg
• University of Iowa
• University of Iowa) and Andrey Fedorov (SPL
• UPenn
• Utah
• UVa
• UWA
• Wash U-St. Louis, dmarcus@wustl.edu
• while at GE

Asclepios INRIA

• PBNRR (cli, bundled in PBNRR extension)

AZE R&D

• JRC2013Vis

Boston Children's Hospital

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Brigham and Women's Hospital

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Surface Toolbox (scripted, built-in)
• test tractography display
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)

BWH

• Add Many Markups Fiducial Test
• Change Tracker Self Test
• Colors Scalar Bar Self Test
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOMRWVMPlugin
• Fiducial Layout Switch Bug1914
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Neurosurgical Planning Tutorial Markups Self Test
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

BWH, SPL

• Crop Volume (loadable, built-in)

BWH, SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

BWH/UAB

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

CARMA

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide (scripted, bundled in Gyro Guide extension)

CRTC

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

gatech

• Robust Statistics Segmenter (cli, built-in)

GE

• Add Scalar Volumes (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• DWIConvert (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Resample Scalar Volume (cli, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926
• Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Tech

• Carrera Slice (loadable, bundled in Carrera Slice extension)

IBM

• Annotations (loadable, built-in)

Isomics

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Models (loadable, built-in)
• Performance Tests
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Tractography Interactive Seeding (loadable, built-in)
• Transforms (loadable, built-in)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Isomics Inc.

• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Slicer MRBTest
• Threshold Threading Test

Isomics, pieper@isomics.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Kingston General Hospital

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Kitware

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Port Placement (scripted, bundled in Port Placement extension)
• Reformat (loadable, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

Kitware)

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

MGH

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Plm Register (scripted, bundled in Slicer RT extension)

MGH, Boston

• Dicom Rt Export (loadable, bundled in Slicer RT extension)

Moka Creative, LLC, kumar.sunil.p@gmail.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

MSC/NLM

• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)

Noware

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

Orobix

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Surface Toolbox (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

PerkLab at Queen's University

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

PerkLab, Queen's

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)

PerkLab, Queen's Universit

• Model Registration (scripted, bundled in Slicer IGT extension)

PerkLab, Queen's University

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)

PMH

• Colors Scalar Bar Self Test
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

PMH, Toronto

• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)

Princess Margaret Cancer Centre

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)

Queen's

• Batch Contour Conversion (scripted, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Data (loadable, built-in)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Rt Import Self Test
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test
• Vff File Reader (loadable, bundled in Slicer RT extension)

Queen's Universit

• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)

Queen's University

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Resection Volume (scripted, bundled in Resection Planner extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Queen's University) Jaime Garcia-Guevara (Queen's University

• Breach Warning Self Test
• Watchdog Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

RMP, PMH

• Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

• Volume Rendering (loadable, built-in)

SBU

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

SCI Institute

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Shiga University of Medical Science

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Shiga University of Medical Science in Japan

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

SINAPSE

• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

SNR

• Path Explorer (loadable, bundled in Slicer IGT extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL

• DICOM2Full Brain Tractography (scripted, built-in)
• Label To DICOMSEGConverter Self Test
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reporting Self Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL B&W Harvard

• PBNRR (cli, bundled in PBNRR extension)

SPL, BWH

• ACPCTransform (cli, built-in)
• Annotations (loadable, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Fiducial Registration (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Image Label Combine (cli, built-in)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Probe Volume With Model (cli, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Robust Statistics Segmenter (cli, built-in)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

SPL, BWH, UPenn

• Merge Models (cli, built-in)

SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Surgical Planning Lab

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

UAB

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

UHN, Toronto

• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)

Uiowa

• DWIConvert (cli, built-in)

UIowa

• DWIConvert (cli, built-in)

UNC

• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• DWIRician LMMSEFilter (cli, built-in)
• Extract Skeleton (cli, built-in)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Univ of Michigan

• Surface Registration (scripted, bundled in CMFreg extension)

Univ. of Iowa

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• PETIndi C (scripted, bundled in PET-Indi C extension)

University 'Magna Graecia' of Catanzaro

• Plastimatch Py (loadable, bundled in Slicer RT extension)

University College Cork

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

University of Heidelberg

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

University of Iowa

• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

University of Iowa) and Andrey Fedorov (SPL

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

UPenn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Scene Views (loadable, built-in)

Utah

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

UVa

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

WashU-St. Louis, dmarcus@wustl.edu

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

while at GE

• Pk Modeling (cli, bundled in Pk Modeling extension)

Modules by contributing individual

191 contributing individuals:

• /
• a
• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmakovich (Isomics)
• Alex Yarmarkovich (Kitware))
• Ali Ghayoor
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Amelie Meyer (PerkLab, Queen's University)
• Analysis Laboratory
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's Universit)
• Andreas Freudling (SPL, BWH)
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Kot (CRTC)
• Anonymous
• Antonio Damato
• Antonio Tristan Vega (UVa)
• Anuja Sharma
• Arie Nakhmani (UAB)
• Atsushi Yamada (Shiga University of Medical Science)
• Beatriz Paniagua from Department of Orthodontics (UNC)
• Benjamin Long (Kitware)
• Benjamin Yvernault
• Bill Lorensen (Noware)
• Brad Davis
• Bradley Lowekamp (MSC/NLM)
• Brian Zenger (CARMA)
• BWH
• c
• Carl-Fredrik Westin
• Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
• Casey B Goodlett (Kitware)
• Charles Marion (Kitware)
• Christian Bauer (Univ. of Iowa)
• Christian Baumgartner
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Daniel Blezek (GE)
• Daniel Haehn (UPenn)
• Danny Perry (Utah)
• Demian Wassermann (Brigham and Women's Hospital)
• Dinggang Shen (UNC)
• Dirk Padfield (GE)
• Dominik Meier (SPL, BWH)
• e
• er (Kingston General Hospital)
• Ethan Ulrich (Univ. of Iowa)
• Eugene Kholmovski (CARMA)
• ez (UVa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Greg Harris
• Greg Sharp (MGH, Boston)
• Gregory Sharp (MGH)
• Guido Gerig (UNC)
• Guillaume Pernelle
• Hans J. Johnson
• Hans Johnson (SINAPSE)
• hans-johnson -at- uiowa.edu
• http://www.psychiatry.uiowa.edu
• i
• Ipek Oguz
• Ivan Kolesov (Stony Brook University)
• Jaime Garcia-Guevara (Queen's University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Baptiste Berger (Kitware)
• Jean-Christophe Fillion-Robin (Kitware)
• Jennifer Andrea (PerkLab, Queen's University)
• Jessica Forbes (SINAPSE)
• Jim Miller (GE)
• Johan Andruejol (Kitware)
• John Buatti (Univ. of Iowa)
• John Evans (MGH)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Joy Matsui (UIowa)
• Julien Finet (Kitware)
• Julien Jomier (Kitware)
• Junichi Tokuda (BWH)
• K
• Kent Williams (UIowa)
• Kent WIlliams
• Kevin Alex (Kingston General Hospital)
• Kevin Wang (Princess Margaret Cancer Centre)
• Kilian Pohl (UPenn)
• Koichiro Murakami (SUMS)
• Kyle Sunderl (Queen's University)
• l
• Lauren Barber
• Lauren O'Donnell (SPL, BWH)
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luca Antiga (Orobix)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• m
• Marc Niethammer (UNC)
• Marcel Prastawa prastawa@sci.utah.edu
• Mark Scully (Uiowa)
• Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
• Markus van Tol (Univ. of Iowa)
• Martin Styner (UNC)
• Mason Winsauer
• Matt Lougheed (PerkLab, Queen's University)
• Mattea Welch (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Matthew Woehlke (Kitware)
• Michael Jeulin-Lagarrigue (Kitware)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Neuro Image Resarch
• Nicholas Herlambang (AZE R&D)
• Nick Tustison (UPenn)
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• p
• Paolo Zaffino (University 'Magna Graecia' of Catanzaro)
• Pat Marion (Kitware)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pierre Seroul (UNC)
• Pietro Nardelli (University College Cork)
• Please direct questions or suggestions to http://groups.google.com/group/plastimatch
• Polina Goll
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• r
• R
• Raul San Jose (SPL, BWH)
• Reinhard Beichel (University of Iowa)
• Reinhard R. Beichel (Univ. of Iowa)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ross Whitaker (Utah)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• Salma Bengali (CARMA)
• Sam Song
• Santiago Aja Fern (UVa)
• Sebastien Barré (Kitware)
• Sebastien Barre
• Shigeyuki Naka (SUMS)
• Soichiro Tani (BWH, SUMS)
• Sonia Pujol (SPL, BWH)
• Stefan Lienhard
• Stephen Aylward (Kitware)
• Stephen R Aylward (Kitware)
• Steve Pieper (SPL)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Sylvain Gouttard
• t
• Tamas Ungi (PerkLab, Queen's Universit)
• the University of North Carolina at Chapel Hill (UNC)
• Tina Kapur
• Tobias Penzkofer
• Tohru Tani (SUMS)
• UNC Medical School
• Uof M School Of Dentistry
• Uof M School of Dentistry
• Vince Magnotta (UIowa)
• Vincent A. Magnotta
• Vincent Magnotta
• Vinicius Boen (Univ of Michigan)
• Vivek Narayan (BWH)
• Wendy Plesniak (SPL, BWH)
• Xiaodong Tao (GE)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• y Wells
• Yanling Liu (SAIC-Frederick, NCI-Frederick)
• Yi Gao (BWH/UAB)
• Yinglin Lee (SPL, BWH)
• Yingxuan Zhu (GE)
• Yinpeng Li
• Yixun Liu (CRTC)
• Yogesh Rathi (yogesh@bwh.harvard.edu)
• Yong Zhang (IBM)
• Yumin Yuan
• Yundi Shi

/

• Dicom Rt Import Plugin

a

• Dicom Rt Import Plugin

Akila Viswanathan

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Alex Yarmakovich

• Models (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

• Data (loadable, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Image Label Combine (cli, built-in)
• Transforms (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Ali Ghayoor

• BRAINSTransform Convert (cli, built-in)
• Perform Metric Test (cli, built-in)

Alireza Mehrtash

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Amelie Meyer

• Plus Remote (scripted, bundled in Slicer IGT extension)

Analysis Laboratory

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Andinet Enquobahrie

• Port Placement (scripted, bundled in Port Placement extension)

Andras Lasso

• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

Andreas Freudling

• Volume Rendering (loadable, built-in)

Andrey Fedorov

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BSpline To Deformation Field (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Change Tracker Self Test
• Crop Volume (loadable, built-in)
• DICOMRWVMPlugin
• DICOMSegmentation Plugin
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Label To DICOMSEGConverter Self Test
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Multi Volume Importer Plugin
• N4ITKBias Field Correction (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reporting (loadable, bundled in Reporting extension)
• Reporting Self Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

Andriy Kot

• PBNRR (cli, bundled in PBNRR extension)

Anonymous

• CLIROITest (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)

Antonio Damato

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Anuja Sharma

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Arie Nakhmani

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Atsushi Yamada

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Beatriz Paniagua from Department of Orthodontics

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

• Sample Data (scripted, built-in)

Benjamin Yvernault

• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)

Bill Lorensen

• Add Scalar Volumes (cli, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

• EMSegment Command Line (cli, built-in)

Bradley Lowekamp

• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

Brian Zenger

• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)

BWH

• DICOMSegmentation Plugin
• Multi Volume Importer Plugin

c

• Dicom Rt Import Plugin

Carl-Fredrik Westin

• UKFTractography (cli, bundled in UKFTractography extension)

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

• Expert Automated Registration (cli, built-in)
• Fiducial Registration (cli, built-in)

Charles Marion

• Data Store (loadable, built-in)

Christian Bauer

• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Christian Baumgartner

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Csaba Pinter

• Batch Contour Conversion (scripted, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Data (loadable, built-in)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Rt Import Self Test
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test
• Vff File Reader (loadable, bundled in Slicer RT extension)

Dan Marcus

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Daniel Blezek

• Execution Model Tour (cli, built-in)

Daniel Haehn

• Annotations (loadable, built-in)
• Centerline Computation (scripted, bundled in VMTK extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Merge Models (cli, built-in)
• Scene Views (loadable, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Danny Perry

• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Demian Wassermann

• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• test tractography display
• Tractography Label Map Seeding (cli, built-in)

Dinggang Shen

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Dirk Padfield

• Label Map Smoothing (cli, built-in)

Dominik Meier

• Fiducial Registration (cli, built-in)

e

• Dicom Rt Import Plugin

er

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Ethan Ulrich

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• PETIndi C (scripted, bundled in PET-Indi C extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Eugene Kholmovski

• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)

ez

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Francois Budin

• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transforms (loadable, built-in)

Greg Gardner

• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Greg Harris

• BRAINSDemon Warp (cli, built-in)
• BRAINSResample (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Greg Sharp

• Dicom Rt Export (loadable, bundled in Slicer RT extension)

Gregory Sharp

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)

Guido Gerig

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Extract Skeleton (cli, built-in)

Guillaume Pernelle

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Hans J. Johnson

• BRAINSDemon Warp (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Hans Johnson

• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
• DWIConvert (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• UKFTractography (cli, bundled in UKFTractography extension)

hans-johnson -at- uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

i

• Dicom Rt Import Plugin

Ipek Oguz

• Convert VTK (cli, bundled in UKFTractography extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Ivan Kolesov

• Carrera Slice (loadable, bundled in Carrera Slice extension)

Jaime Garcia-Guevara

• Watchdog (loadable, bundled in Slicer IGT extension)

Jan Egger

• i Gyne (scripted, bundled in i Gyne extension)

Jayender Jagadeesan

• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

• Data Store (loadable, built-in)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)

Jean-Christophe Fillion-Robin

• CLI4Test
• Data Store (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Sample Data (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Transforms (loadable, built-in)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Jennifer Andrea

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)

Jessica Forbes

• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

Jim Miller

• Charting (scripted, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926

Johan Andruejol

• Units (loadable, built-in)

John Buatti

• PETIndi C (scripted, bundled in PET-Indi C extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

John Evans

• Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Josh Cates

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Joy Matsui

• DWIConvert (cli, built-in)

Julien Finet

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Image Maker (cli, bundled in Image Maker extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Scene Performance (scripted, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Julien Jomier

• Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)

K

• Dicom Rt Import Plugin

Kent Williams

• BRAINSDWICleanup (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Convert VTK (cli, bundled in UKFTractography extension)
• DWIConvert (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Kent WIlliams

• BRAINSStrip Rotation (cli, built-in)

Kevin Alex

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Kevin Wang

• Colors Scalar Bar Self Test
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Import Plugin
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Kilian Pohl

• Annotations (loadable, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Scene Views (loadable, built-in)

Koichiro Murakami

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Kyle Sunderl

• Dvh Comparison (scripted, bundled in Slicer RT extension)

l

• Dicom Rt Import Plugin

Lauren Barber

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Lauren O'Donnell

• Fiber Bundle Label Select (cli, built-in)
• Probe Volume With Model (cli, built-in)

Laurent Chauvin

• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liang-Jia Zhu

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Liangjia Zhu

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luca Antiga

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Surface Toolbox (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Luis G. Torres

• Port Placement (scripted, bundled in Port Placement extension)

Luping Fang

• Gyro Guide (scripted, bundled in Gyro Guide extension)

m

• Dicom Rt Import Plugin

Marc Niethammer

• DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa prastawa@sci.utah.edu

• ABC (cli, bundled in ABC extension)

Mark Scully

• DWIConvert (cli, built-in)

Markus Van Tol

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

Markus van Tol

• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Styner

• Convert VTK (cli, bundled in UKFTractography extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Extract Skeleton (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Mason Winsauer

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Matt Lougheed

• Resection Volume (scripted, bundled in Resection Planner extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)

Mattea Welch

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Matthew Holden

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Matthew S. Holden

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Matthew Woehlke

• Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

• Reformat (loadable, built-in)

Minjeong Kim

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Nabgha Fahrat

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Neuro Image Resarch

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

• JRC2013Vis

Nick Tustison

• N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

• ACPCTransform (cli, built-in)
• Add Many Markups Fiducial Test
• Annotations (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Colors Scalar Bar Self Test
• Data (loadable, built-in)
• Fiducial Layout Switch Bug1914
• Grayscale Model Maker (cli, built-in)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)

Nigel Goh

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

Nikos Chrisochoides

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Olivier Clatz

• PBNRR (cli, bundled in PBNRR extension)

p

• Dicom Rt Import Plugin

Paolo Zaffino

• Plastimatch Py (loadable, bundled in Slicer RT extension)

Pat Marion

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Paul Mercea

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

• Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

• Carrera Slice (loadable, bundled in Carrera Slice extension)

Peter Savadjiev

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Pierre Seroul

• Extract Skeleton (cli, built-in)

Pietro Nardelli

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Polina Goll

• EMSegment Command Line (cli, built-in)

Qing Pan

• Gyro Guide (scripted, bundled in Gyro Guide extension)

r

• Dicom Rt Import Plugin

R

• Dicom Rt Import Plugin

Raul San Jose

• Diffusion Tensor Scalar Measurements (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)

Reinhard Beichel

• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Reinhard R. Beichel

• PETIndi C (scripted, bundled in PET-Indi C extension)

Rob MacLeod

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Ron Kikinis

• ACPCTransform (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Crop Volume (loadable, built-in)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Robust Statistics Segmenter (cli, built-in)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)

Ross Whitaker

• Label Map Smoothing (cli, built-in)

Ruifeng Chen

• Gyro Guide (scripted, bundled in Gyro Guide extension)

S

• Dicom Rt Import Plugin
• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Salma Bengali

• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Sam Song

• i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastien Barré

• Cameras (loadable, built-in)

Sebastien Barre

• EMSegment Command Line (cli, built-in)

Shigeyuki Naka

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

• Dice Computation (loadable, bundled in Dice Computation extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)

Stefan Lienhard

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Stephen Aylward

• Extract Skeleton (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

• Expert Automated Registration (cli, built-in)

Steve Pieper

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Performance Tests
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer MRBTest
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Threading Test
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• View Controllers (loadable, built-in)
• Volumes (loadable, built-in)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sylvain Bouix

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Sylvain Gouttard

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

t

• Dicom Rt Import Plugin

Tamas Ungi

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Breach Warning Self Test
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Watchdog Self Test
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

the University of North Carolina at Chapel Hill

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Tina Kapur

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

• i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

UNC Medical School

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

• Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Vince Magnotta

• DWIConvert (cli, built-in)

Vincent A. Magnotta

• BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

• BRAINSResample (cli, built-in)

Vinicius Boen

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

Vivek Narayan

• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Segment CAD (scripted, bundled in Open CAD extension)

Wendy Plesniak

• Annotations (loadable, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Xiaodong Tao

• DWIConvert (cli, built-in)
• Model To Label Map (cli, built-in)

Xiaofeng Liu

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Xiaojun Chen

• i Gyne (scripted, bundled in i Gyne extension)

y Wells

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

• Volume Rendering (loadable, built-in)

Yi Gao

• i Gyne (scripted, bundled in i Gyne extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Yinglin Lee

• Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

• Pk Modeling (cli, bundled in Pk Modeling extension)

Yinpeng Li

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Yixun Liu

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Yogesh Rathi

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Yong Zhang

• Annotations (loadable, built-in)

Yumin Yuan

• EMSegment Command Line (cli, built-in)

Yundi Shi

• Convert VTK (cli, bundled in UKFTractography extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Modules by type

3 types:

• cli
• loadable
• scripted

cli

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Apply Matrix (cli, bundled in CMFreg extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStrip Rotation (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CLIROITest (cli, built-in)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• Convert VTK (cli, bundled in UKFTractography extension)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Downsize (cli, bundled in CMFreg extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiducial Registration (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• Image Label Combine (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Non Growing (cli, bundled in CMFreg extension)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
• Probe Volume With Model (cli, built-in)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Simple Region Growing Segmentation (cli, built-in)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• VBRAINSDemon Warp (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)

loadable

• Annotations (loadable, built-in)
• Beams (loadable, bundled in Slicer RT extension)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Cameras (loadable, built-in)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Colors (loadable, built-in)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Crop Volume (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Double Arrays (loadable, built-in)
• EMSegment (loadable, built-in)
• EMSegment Quick (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Open IGTLink IF (loadable, built-in)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• Plastimatch Py (loadable, bundled in Slicer RT extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Subject Hierarchy (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Units (loadable, built-in)
• Vff File Reader (loadable, bundled in Slicer RT extension)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Volumes (loadable, built-in)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Welcome (loadable, built-in)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

scripted

• Batch Contour Conversion (scripted, bundled in Slicer RT extension)
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Charting (scripted, built-in)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data Probe (scripted, built-in)
• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Endoscopy (scripted, built-in)
• Extension Wizard (scripted, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• i Gyne (scripted, bundled in i Gyne extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Multi Volume Importer (scripted, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Resection Volume (scripted, bundled in Resection Planner extension)
• Sample Data (scripted, built-in)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Scene Performance (scripted, built-in)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Simple Filters (scripted, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by extension

58 extensions:

• ABC
• Airway Segmentation
• builtin
• Cardiac MRI Toolkit
• Cardiac Agaston Measures
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Developer Tools For Extensions
• Dice Computation
• DTIAtlas Fiber Analyzer
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Mesh To Label Map
• Multidim Data
• Needle Finder
• Open CAD
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PET-Indi C
• PETDICOMExtension
• PETTumor Segmentation
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Resection Planner
• Scoliosis
• Segmentation Aided Registration
• VMTK
• Slicer IGT
• Slicer RT
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• UKFTractography
• Volume Clip
• Window Level Effect
• XNATSlicer

ABC

• ABC (cli, bundled in ABC extension)

AirwaySegmentation

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

builtin

• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Annotations (loadable, built-in)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStrip Rotation (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cameras (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• CLIROITest (cli, built-in)
• Colors (loadable, built-in)
• Create DICOMSeries (cli, built-in)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Double Arrays (loadable, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Image Label Combine (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Markups (loadable, built-in)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Open IGTLink IF (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• Probe Volume With Model (cli, built-in)
• Reformat (loadable, built-in)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Scene Views (loadable, built-in)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Toolbox (scripted, built-in)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Welcome (loadable, built-in)

Cardiac_MRI_Toolkit

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

CardiacAgastonMeasures

• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

CarreraSlice

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• KUtil (scripted, bundled in Carrera Slice extension)

CBC_3D_I2MConversion

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

ChangeTracker

• Change Tracker (scripted, bundled in Change Tracker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)

CleaverExtension

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

CMFreg

• Apply Matrix (cli, bundled in CMFreg extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

CornerAnnotation

• Corner Annotation (scripted, bundled in Corner Annotation extension)

CurveMaker

• Curve Maker (scripted, bundled in Curve Maker extension)

DeveloperToolsForExtensions

• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)

DiceComputation

• Dice Computation (loadable, bundled in Dice Computation extension)

DTIAtlasFiberAnalyzer

• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)

ErodeDilateLabel

• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)

FastGrowCutEffect

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)

FinslerTractography

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

GelDosimetryAnalysis

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

GyroGuide

• Gyro Guide (scripted, bundled in Gyro Guide extension)

IASEM

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

iGyne

• i Gyne (scripted, bundled in i Gyne extension)

ImageMaker

• Image Maker (cli, bundled in Image Maker extension)

IntensitySegmenter

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

LAScarSegmenter

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

LongitudinalPETCT

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

MABMIS

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

MatlabBridge

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

MeshToLabelMap

• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)

MultidimData

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

NeedleFinder

• Needle Finder (scripted, bundled in Needle Finder extension)

OpenCAD

• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Segment CAD (scripted, bundled in Open CAD extension)

PBNRR

• PBNRR (cli, bundled in PBNRR extension)

PercutaneousApproachAnalysis

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

PerkTutor

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

PET-IndiC

• PETIndi C (scripted, bundled in PET-Indi C extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)

PETDICOMExtension

• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

PETTumorSegmentation

• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

PkModeling

• Pk Modeling (cli, bundled in Pk Modeling extension)

PortPlacement

• Port Placement (scripted, bundled in Port Placement extension)

PyDevRemoteDebug

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

Reporting

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Reporting (loadable, bundled in Reporting extension)

ResectionPlanner

• Resection Volume (scripted, bundled in Resection Planner extension)

Scoliosis

• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)

SegmentationAidedRegistration

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

SlicerExtension-VMTK

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Vesselness Filtering (scripted, bundled in VMTK extension)

SlicerIGT

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)

SlicerRT

• Batch Contour Conversion (scripted, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
• Plastimatch Py (loadable, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)

SlicerToKiwiExporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

SobolevSegmenter

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

SwissSkullStripper

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

TCIABrowser

• TCIABrowser (scripted, bundled in TCIABrowser extension)

ThingiverseBrowser

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

TrackerStabilizer

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

UKFTractography

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

VolumeClip

• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

WindowLevelEffect

• Window Level Effect (scripted, bundled in Window Level Effect extension)

XNATSlicer

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Extensions by category

25 categories:

• Cardiac
• Cardiac MRI toolkit
• Converters
• Developer Tools
• Diffusion
• Editor Effects
• Exporter
• Filtering
  • Morphology
• IGT
• Informatics
• Mesh Generation
• Microscopy
• Multidimensional data
• Quantification
• Radiotherapy
• Registration
• Remote
• Scoliosis
• Segmentation
• Shape Analysis
• Tractography
• Training
• Utilities
• Vascular Modeling Toolkit
• Wizards

Cardiac

• Cardiac Agaston Measures

Cardiac MRI toolkit

• Cardiac MRI Toolkit

Converters

• PETDICOMExtension

Developer Tools

• Image Maker
• Developer Tools For Extensions
• Matlab Bridge
• Py Dev Remote Debug

Diffusion

• DTIAtlas Fiber Analyzer

Editor Effects

• Window Level Effect

Exporter

• Slicer To Kiwi Exporter

Filtering

Morphology

• Erode Dilate Label

IGT

• Port Placement
• Gyro Guide
• Corner Annotation
• Percutaneous Approach Analysis
• Needle Finder
• Slicer IGT
• Tracker Stabilizer
• i Gyne
• Resection Planner

Informatics

• Reporting
• Longitudinal PETCT
• Curve Maker
• TCIABrowser

Mesh Generation

• CBC 3D I2MConversion
• Cleaver Extension

Microscopy

• IASEM

Multidimensional data

• Multidim Data

Quantification

• Dice Computation
• PET-Indi C
• Pk Modeling

Radiotherapy

• Slicer RT
• Gel Dosimetry Analysis

Registration

• CMFreg
• Segmentation Aided Registration
• PBNRR

Remote

• XNATSlicer

Scoliosis

• Scoliosis

Segmentation

• Airway Segmentation
• ABC
• Swiss Skull Stripper
• Carrera Slice
• PETTumor Segmentation
• LAScar Segmenter
• Volume Clip
• Intensity Segmenter
• Open CAD
• MABMIS
• Sobolev Segmenter
• Fast Grow Cut Effect

Shape Analysis

• Mesh To Label Map

Tractography

• Finsler Tractography
• UKFTractography

Training

• Perk Tutor

Utilities

• Thingiverse Browser

Vascular Modeling Toolkit

• VMTK

Wizards

• Change Tracker

Extensions by name

57 extensions:

• ABC
• Airway Segmentation
• Cardiac MRI Toolkit
• Cardiac Agaston Measures
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Developer Tools For Extensions
• Dice Computation
• DTIAtlas Fiber Analyzer
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Mesh To Label Map
• Multidim Data
• Needle Finder
• Open CAD
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PET-Indi C
• PETDICOMExtension
• PETTumor Segmentation
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Resection Planner
• Scoliosis
• Segmentation Aided Registration
• VMTK
• Slicer IGT
• Slicer RT
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• UKFTractography
• Volume Clip
• Window Level Effect
• XNATSlicer

Extensions by contributing organization

55 contributing organizations:

• Asclepios INRIA) and Nikos Chrisochoides (CRTC
• Boston Childrens Hospital
• Brigham and Women's Hospital
• BWH
• BWH & MGH
• BWH, SPL
• BWH/UAB
• CARMA
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
• Crisalix
• CRTC
• Department of Neurosurgery, PLA General Hospital, Beijing, China
• Department of Orthodontics, UNC
• GE
• GE GLobal Research
• GT
• Isomics
• Kitware
• Massachusetts General Hospital
• Moka Creative LLC, Washington University in St. Louis
• NIRAL, UNC
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SBU
• SCI Institute
• Shiga University of Medical Science
• Shiga University of Medical Science, Japan
• Shiga University of Medical Science, Japan, SPL
• SPL
• SPL and BWH
• SPL B&W Harvard
• SRI
• Stony Brook University
• Surgical Planning Lab
• UAB
• UIowa
• UNC
• Univ of Michigan
• University College Cork
• University of Bern
• University of Heidelberg
• University of Iowa
• University of Utah
• Utah
• UWA
• Washington University in St. Louis
• yogesh@bwh.harvard.edu

Asclepios INRIA) and Nikos Chrisochoides (CRTC

• PBNRR

Boston Childrens Hospital

• VMTK

Brigham and Women's Hospital

• Erode Dilate Label
• Slicer IGT

BWH

• Change Tracker
• Curve Maker
• Dice Computation
• Fast Grow Cut Effect
• Open CAD
• Pk Modeling
• Segmentation Aided Registration
• Tracker Stabilizer

BWH & MGH

• Carrera Slice

BWH, SPL

• PETDICOMExtension

BWH/UAB

• Segmentation Aided Registration

CARMA

• Cardiac MRI Toolkit

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

• Gyro Guide

Crisalix

• Swiss Skull Stripper

CRTC

• CBC 3D I2MConversion
• PBNRR

Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide

Department of Orthodontics, UNC

• Intensity Segmenter

GE

• Pk Modeling

GE GLobal Research

• MABMIS

GT

• Carrera Slice

Isomics

• Carrera Slice
• Finsler Tractography
• VMTK
• Slicer To Kiwi Exporter
• XNATSlicer

Kitware

• Change Tracker
• Image Maker
• Matlab Bridge
• Port Placement
• VMTK
• Slicer To Kiwi Exporter

Massachusetts General Hospital

• Slicer RT

Moka Creative LLC, Washington University in St. Louis

• XNATSlicer

NIRAL, UNC

• Intensity Segmenter

Noware

• Swiss Skull Stripper

Orobix

• VMTK

PerkLab at Queen's University

• Py Dev Remote Debug

PerkLab, Queen's

• Multidim Data

PerkLab, Queen's University

• Gel Dosimetry Analysis
• Matlab Bridge
• Scoliosis
• Slicer RT
• Volume Clip

PMH

• Multidim Data

Queen's University

• Perk Tutor
• Resection Planner
• Slicer IGT

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Bridge
• Slicer RT

SBU

• LAScar Segmenter

SCI Institute

• Cleaver Extension

Shiga University of Medical Science

• Slicer To Kiwi Exporter

Shiga University of Medical Science, Japan

• Corner Annotation

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis

SPL

• Change Tracker
• Percutaneous Approach Analysis
• PET-Indi C
• PETTumor Segmentation
• Reporting
• Window Level Effect

SPL and BWH

• TCIABrowser

SPL B&W Harvard

• PBNRR

SRI

• Pk Modeling

Stony Brook University

• Carrera Slice
• Fast Grow Cut Effect

Surgical Planning Lab

• Longitudinal PETCT

UAB

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

UIowa

• Cardiac Agaston Measures

UNC

• CMFreg
• Developer Tools For Extensions
• DTIAtlas Fiber Analyzer
• MABMIS
• Mesh To Label Map
• Port Placement

Univ of Michigan

• CMFreg

University College Cork

• Airway Segmentation

University of Bern

• Swiss Skull Stripper

University of Heidelberg

• Longitudinal PETCT

University of Iowa

• PET-Indi C
• PETDICOMExtension
• PETTumor Segmentation

University of Utah

• ABC

Utah

• LAScar Segmenter
• Segmentation Aided Registration

UWA

• Thingiverse Browser

Washington University in St. Louis

• XNATSlicer

yogesh@bwh.harvard.edu

• UKFTractography

Extensions by contributing individual

130 contributing individuals:

• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmarkovich (Kitware))
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's Universit)
• Andre Mastmeyer
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Fedorov (BWH)
• Andriy Kot (CRTC)
• Antonio Damato
• Antonio Tristan-Vega (Isomics)
• Arie Nakhmani (UAB)
• Arnaud Gelas (Crisalix)
• Atsushi Yamada (Shiga University of Medical Science)
• Beatriz Paniagua (UNC)
• Bill Lorensen (Noware)
• Bradley Lowekamp (MSC/NLM)
• Brig Bagley (SCI Institute)
• Carl-Fredrik Westin
• Christian Bauer (Univ. of Iowa)
• Christian Baumgartner
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Daniel Haehn (UPenn)
• Danny Perry (Utah)
• Demian Wasssermann
• Dinggang Shen (UNC)
• Ethan Ulrich (Univ. of Iowa)
• Eugene Kholmovski (CARMA)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Greg Sharp (MGH, Boston)
• Guillaume Pernelle
• Hans Johnson (SINAPSE)
• Ipek Oguz
• Ivan Kolesov (Stony Brook University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Christophe Fillion-Robin (Kitware)
• Jennifer Andrea (PerkLab, Queen's University)
• Jessica Forbes (SINAPSE)
• Jiashu Zhang (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• Jim Miller (GE)
• John Buatti (Univ. of Iowa)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Julien Finet (Kitware)
• Junichi Tokuda (BWH)
• Karl Fritscher (BWH & MGH)
• Kent Williams (UIowa)
• Kevin Wang (Princess Margaret Cancer Centre)
• Kilian Pohl (UPenn)
• Koichiro Murakami (SUMS)
• Lauren Barber
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luca Antiga (Orobix)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Mahnaz Maddah (SRI)
• Manson Winsauer (UNC)
• Marcel Prastawa (University of Utah)
• Markus van Tol (Univ. of Iowa)
• Martin Styner (UNC)
• Matt Lougheed (PerkLab, Queen's University)
• Mattea Welch (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Mauricio Reyes (University of Bern)
• Ming-ching Chang (GE)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• Pat Marion (Kitware)
• Patricio Vela (GT)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pietro Nardelli (University College Cork)
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Reinhard Beichel (University of Iowa)
• Reinhard R. Beichel (Univ. of Iowa)
• Rick Herrick (Washington University in St. Louis)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Ryan Eckbo
• S
• Salma Bengali (CARMA)
• Sam Song
• Stefan Bauer (University of Bern)
• Stefan Lienhard
• Steve Pieper (SPL)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Tamas Ungi (PerkLab, Queen's Universit)
• Thomas Fejes (University of Bern)
• Tina Kapur
• Tobias Penzkofer
• Vinicius Boen (Univ of Michigan)
• Vivek Narayan (BWH)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• Xiaolei Chen (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• y Wells
• Yi Gao (BWH/UAB)
• Yingxuan Zhu (GE)
• Yinpeng Li
• Yixun Liu (CRTC)
• Yogesh Rathi (yogesh@bwh.harvard.edu)
• Yundi Shi

Akila Viswanathan

• i Gyne
• Needle Finder

Alan Morris

• Cardiac MRI Toolkit
• LAScar Segmenter
• Segmentation Aided Registration

Alex Yarmarkovich

• Finsler Tractography

Alireza Mehrtash

• i Gyne
• Needle Finder
• TCIABrowser

Allen Tannenbaum

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

Andinet Enquobahrie

• Port Placement

Andras Lasso

• Matlab Bridge
• Multidim Data
• Py Dev Remote Debug
• Slicer RT
• Tracker Stabilizer
• Volume Clip

Andre Mastmeyer

• Needle Finder

Andrey Fedorov

• CBC 3D I2MConversion
• Change Tracker
• Longitudinal PETCT
• PBNRR
• PET-Indi C
• PETDICOMExtension
• PETTumor Segmentation
• Reporting
• TCIABrowser
• Window Level Effect

Andriy Fedorov

• Pk Modeling

Andriy Kot

• PBNRR

Antonio Damato

• i Gyne
• Needle Finder

Antonio Tristan-Vega

• Finsler Tractography

Arie Nakhmani

• Sobolev Segmenter

Arnaud Gelas

• Swiss Skull Stripper

Atsushi Yamada

• Corner Annotation
• Slicer To Kiwi Exporter

Beatriz Paniagua

• Intensity Segmenter

Bill Lorensen

• Swiss Skull Stripper

Bradley Lowekamp

• IASEM

Brig Bagley

• Cleaver Extension

Carl-Fredrik Westin

• Finsler Tractography
• UKFTractography

Christian Bauer

• PET-Indi C
• PETTumor Segmentation

Christian Baumgartner

• UKFTractography

Csaba Pinter

• Gel Dosimetry Analysis
• Slicer RT

Dan Marcus

• XNATSlicer

Daniel Haehn

• VMTK

Danny Perry

• LAScar Segmenter
• Segmentation Aided Registration

Demian Wasssermann

• Finsler Tractography

Dinggang Shen

• MABMIS

Ethan Ulrich

• PET-Indi C
• PETDICOMExtension
• PETTumor Segmentation

Eugene Kholmovski

• Cardiac MRI Toolkit

Fotis Drakopoulos

• CBC 3D I2MConversion
• PBNRR

Francois Budin

• Developer Tools For Extensions
• DTIAtlas Fiber Analyzer
• Intensity Segmenter
• Mesh To Label Map

Franklin King

• Scoliosis

Greg Gardner

• LAScar Segmenter
• Segmentation Aided Registration

Greg Sharp

• Slicer RT

Guillaume Pernelle

• i Gyne
• Needle Finder

Hans Johnson

• Cardiac Agaston Measures
• UKFTractography

Ipek Oguz

• UKFTractography

Ivan Kolesov

• Carrera Slice
• Fast Grow Cut Effect

Jan Egger

• i Gyne
• Needle Finder

Jayender Jagadeesan

• Open CAD
• Tracker Stabilizer

Jean-Christophe Fillion-Robin

• Change Tracker
• Matlab Bridge
• VMTK
• Slicer To Kiwi Exporter

Jennifer Andrea

• Gel Dosimetry Analysis

Jessica Forbes

• Cardiac Agaston Measures

Jiashu Zhang

• Gyro Guide

Jim Miller

• MABMIS
• Pk Modeling

John Buatti

• PET-Indi C
• PETTumor Segmentation

Jonathan Bronson

• Cleaver Extension

Josh Cates

• Cardiac MRI Toolkit
• LAScar Segmenter
• Segmentation Aided Registration

Julien Finet

• Image Maker

Junichi Tokuda

• Curve Maker
• Erode Dilate Label
• Percutaneous Approach Analysis
• Slicer IGT

Karl Fritscher

• Carrera Slice

Kent Williams

• UKFTractography

Kevin Wang

• Matlab Bridge
• Multidim Data
• Slicer RT

Kilian Pohl

• Change Tracker

Koichiro Murakami

• Percutaneous Approach Analysis

Lauren Barber

• i Gyne
• Needle Finder

Laurent Chauvin

• Dice Computation
• Percutaneous Approach Analysis
• Tracker Stabilizer

Liang-Jia Zhu

• Segmentation Aided Registration

Liangjia Zhu

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter

Luca Antiga

• VMTK

Luis G. Torres

• Port Placement

Luping Fang

• Gyro Guide

Mahnaz Maddah

• Pk Modeling

Manson Winsauer

• CMFreg

Marcel Prastawa

• ABC

Markus van Tol

• PET-Indi C
• PETTumor Segmentation

Martin Styner

• UKFTractography

Matt Lougheed

• Resection Planner
• Volume Clip

Mattea Welch

• Gel Dosimetry Analysis

Matthew Holden

• Multidim Data

Matthew S. Holden

• Perk Tutor

Mauricio Reyes

• Swiss Skull Stripper

Ming-ching Chang

• Pk Modeling

Minjeong Kim

• MABMIS

Nabgha Fahrat

• i Gyne
• Needle Finder

Nicole Aucoin

• Reporting

Nigel Goh

• Thingiverse Browser

Nikos Chrisochoides

• CBC 3D I2MConversion

Olivier Clatz

• PBNRR

Pat Marion

• Slicer To Kiwi Exporter

Patricio Vela

• Carrera Slice

Paul Mercea

• Longitudinal PETCT

Pengdong Xiao

• Intensity Segmenter

Peter Black

• Change Tracker

Peter Karasev

• Carrera Slice

Peter Savadjiev

• Finsler Tractography
• UKFTractography

Pietro Nardelli

• Airway Segmentation

Qing Pan

• Gyro Guide

Reinhard Beichel

• PETTumor Segmentation

Reinhard R. Beichel

• PET-Indi C

Rick Herrick

• XNATSlicer

Rob MacLeod

• Cardiac MRI Toolkit
• LAScar Segmenter
• Segmentation Aided Registration

Ron Kikinis

• Change Tracker
• Fast Grow Cut Effect

Ruifeng Chen

• Gyro Guide

Ryan Eckbo

• UKFTractography

S

• i Gyne
• Needle Finder

Salma Bengali

• Cardiac MRI Toolkit

Sam Song

• i Gyne
• Needle Finder

Stefan Bauer

• Swiss Skull Stripper

Stefan Lienhard

• UKFTractography

Steve Pieper

• Carrera Slice
• Reporting
• VMTK
• Slicer To Kiwi Exporter
• Window Level Effect
• XNATSlicer

Sunil Kumar

• XNATSlicer

Sylvain Bouix

• Segmentation Aided Registration

Tamas Ungi

• Perk Tutor
• Scoliosis
• Slicer IGT

Thomas Fejes

• Swiss Skull Stripper

Tina Kapur

• i Gyne
• Needle Finder

Tobias Penzkofer

• i Gyne
• Needle Finder

Vinicius Boen

• CMFreg

Vivek Narayan

• Open CAD

Xiaofeng Liu

• MABMIS

Xiaojun Chen

• i Gyne
• Needle Finder

Xiaolei Chen

• Gyro Guide

y Wells

• i Gyne
• Needle Finder

Yi Gao

• Carrera Slice
• Fast Grow Cut Effect
• i Gyne
• LAScar Segmenter
• Needle Finder
• Segmentation Aided Registration

Yingxuan Zhu

• Pk Modeling

Yinpeng Li

• UKFTractography

Yixun Liu

• CBC 3D I2MConversion
• PBNRR

Yogesh Rathi

• UKFTractography

Yundi Shi

• UKFTractography