Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
 
** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
* [[#Modules_by_category_CMF_Registration|CMF Registration]]
 
** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
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*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 +
* [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
 
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
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** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 +
** [[#Modules_by_category_Shape_Analysis_CMF_Registration|CMF Registration]]
 +
*** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
<span id='Modules_by_category_CMF_Registration'></span>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== CMF Registration ==
 
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 
=== Voxelbase Registration ===
 
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
 
<span id='Modules_by_category_Converters'></span>
 
<span id='Modules_by_category_Converters'></span>
 
== Converters ==
 
== Converters ==
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* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 
 
* [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Extension Stats]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Extension Stats]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
 
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
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* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
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=== Tractography ===
 
=== Tractography ===
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 +
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_Editor_Effects'></span>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
== Editor Effects ==
 
== Editor Effects ==
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<span id='Modules_by_category_Examples'></span>
 
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
<span id='Modules_by_category_Exporter'></span>
 
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
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===== Test =====
 
===== Test =====
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Margin_Calculator'></span>
 +
== Margin Calculator ==
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
== Mesh Generation ==
 
== Mesh Generation ==
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* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
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* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
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<span id='Modules_by_category_Segmentation'></span>
 
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [[Documentation/4.4/Modules/ABC|ABC]]     <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
+
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 +
* [[Documentation/4.4/Modules/ABC|ABC]]   <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
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* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Shape_Analysis'></span>
 
<span id='Modules_by_category_Shape_Analysis'></span>
 
 
== Shape Analysis ==
 
== Shape Analysis ==
 
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
 
* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 
* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC] extension)</small>
+
* [[Documentation/4.4/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small>
 +
<span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span>
 +
=== CMF Registration ===
 +
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 +
==== Voxelbase Registration ====
 +
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
<span id='Modules_by_category_Slicelets'></span>
 
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
Line 452: Line 460:
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
 +
* Scene Performance    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* Scene Performance    <small>(scripted, built-in)</small>
 
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
Line 490: Line 498:
 
<span id='Modules_by_category_Wizards'></span>
 
<span id='Modules_by_category_Wizards'></span>
 
== Wizards ==
 
== Wizards ==
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
<span id='Modules_by_category_Work_in_Progress'></span>
 
<span id='Modules_by_category_Work_in_Progress'></span>
Line 506: Line 514:
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 
= Modules by name =
 
= Modules by name =
226 modules:
+
233 modules:
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
+
* [[Documentation/4.4/Modules/ABC|ABC]]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
 
* [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
Line 528: Line 536:
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
Line 546: Line 554:
 
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
Line 572: Line 580:
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
Line 582: Line 592:
 
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small>
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
Line 590: Line 600:
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
Line 601: Line 611:
 
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
Line 620: Line 630:
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
Line 626: Line 636:
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
Line 638: Line 649:
 
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
Line 646: Line 657:
 
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 
* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
Line 664: Line 677:
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
Line 676: Line 689:
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC] extension)</small>
+
* [[Documentation/4.4/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small>
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
+
* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
Line 689: Line 702:
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
Line 701: Line 714:
 
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 +
* [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
Line 729: Line 743:
 
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
 +
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>

Latest revision as of 17:32, 21 November 2019

Home < Documentation < 4.4 < ModuleExtensionListing



List of extensions known to be broken

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport (cli, built-in)
  • DTIexport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

CMF Registration

Voxelbase Registration

Slicelets

Surface Models

Testing

  • Self Tests
  • CLIROITest (cli, built-in)
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test
  • Watchdog Self Test

SlicerRT Tests

TestCases

  • Slice Link Logic (scripted, built-in)
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close (scripted, built-in)
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • Scene Performance (scripted, built-in)
  • Charting (scripted, built-in)
  • Neurosurgical Planning Tutorial Markups Self Test
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • View Controllers Slice Interpolation Bug1926
  • Slicer4Minute (scripted, built-in)
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup (cli, built-in)

Utilities

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

Modules by name

233 modules: