Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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<noinclude>{{:Documentation/4.4/ModuleExtensionListing/TOC}}</noinclude>
 
<noinclude>{{:Documentation/4.4/ModuleExtensionListing/TOC}}</noinclude>
= Modules by name =
+
= Modules by category =
218 modules:
+
37 categories:
* [http://www.nitrc.org/projects/abc ABC]   <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
+
* [[#BRAINS|BRAINS]]
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
+
** [[#LabelStatistics|Label Statistics]]
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
+
* [[#Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
+
* [[#CMF_Registration|CMF Registration]]
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
+
** [[#Voxelbase_Registration|Voxelbase Registration]]
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[#Converters|Converters]]
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Developer_Tools|Developer Tools]]
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
** [[#DICOM_Plugins|DICOM Plugins]]
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
** [[#Editor_Extensions|Editor Extensions]]
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
+
** [[#Matlab|Matlab]]
* BRAINSDWICleanup    <small>(cli, built-in)</small>
+
* [[#Diffusion|Diffusion]]
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
+
** [[#Diffusion_Data_Conversion|Diffusion Data Conversion]]
* BRAINSLabel Stats    <small>(cli, built-in)</small>
+
** [[#Diffusion_Tensor_Images|Diffusion Tensor Images]]
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
+
** [[#Diffusion_Weighted_Images|Diffusion Weighted Images]]
* BRAINSResize    <small>(cli, built-in)</small>
+
** [[#FiberAnalysis|Fiber Analysis]]
* BRAINSROIAuto    <small>(cli, built-in)</small>
+
** [[#Tractography|Tractography]]
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
+
* [[#Editor_Effects|Editor Effects]]
* BRAINSTransform Convert    <small>(cli, built-in)</small>
+
* [[#EditorEffect|Editor Effect]]
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[#Endoscopy|Endoscopy]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]   <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[#Examples|Examples]]
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
+
* [[#Exporter|Exporter]]
* [http://slicer.vmtk.org/ Centerline Computation]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[#File|File]]
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[#Filtering|Filtering]]
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
+
** [[#Arithmetic|Arithmetic]]
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+
** [[#Denoising|Denoising]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
** [[#Morphology|Morphology]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#IGT|IGT]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#Informatics|Informatics]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#Legacy|Legacy]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
** [[#Converters|Converters]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
** [[#Diffusion|Diffusion]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
*** [[#Denoising|Denoising]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
*** [[#Diffusion_Data_Conversion|Diffusion Data Conversion]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
** [[#Filtering|Filtering]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
** [[#Registration|Registration]]
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
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** [[#Work_in_Progress|Work in Progress]]
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
+
*** [[#Diffusion_Tensor|Diffusion Tensor]]
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
**** [[#Test|Test]]
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Mesh_Generation|Mesh Generation]]
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#MeshGeneration|Mesh Generation]]
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Microscopy|Microscopy]]
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
+
* [[#Multidimensional_data|Multidimensional data]]
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[#MultiVolume_Support|Multi Volume Support]]
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
* [[#Perk_Tutor|Perk Tutor]]
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[#Plastimatch|Plastimatch]]
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
+
** [[#Registration|Registration]]
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
** [[#Utilities|Utilities]]
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [[#Quantification|Quantification]]
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
+
** [[#ChangeQuantification|Change Quantification]]
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
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* [[#Radiotherapy|Radiotherapy]]
* [[Documentation/4.4/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* [[#Registration|Registration]]
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
** [[#Specialized|Specialized]]
* [[Documentation/4.4/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
+
* [[#Segmentation|Segmentation]]
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
+
** [[#Specialized|Specialized]]
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Shape_Analysis|Shape Analysis]]
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Slicelets|Slicelets]]
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Surface_Models|Surface Models]]
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Testing|Testing]]
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
+
** [[#IGT_Tests|IGT Tests]]
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+
** [[#SlicerRT_Tests|Slicer RT Tests]]
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
+
** [[#TestCases|Test Cases]]
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Unspecified|Unspecified]]
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[#Utilities|Utilities]]
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
** [[#BRAINS|BRAINS]]
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[#Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[#Wizards|Wizards]]
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[#Work_in_Progress|Work in Progress]]
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
** [[#Converters|Converters]]
* DWIConvert    <small>(cli, built-in)</small>
+
** [[#Informatics|Informatics]]
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
+
*** [[#TestCases|Test Cases]]
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
+
* [[#XNATSlicer|XNATSlicer]]
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+
== BRAINS ==
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
+
=== LabelStatistics ===
* EMSegment Command Line    <small>(cli, built-in)</small>
+
* BRAINSLabel Stats   <small>(cli, built-in)</small>
* EMSegment Quick    <small>(loadable, built-in)</small>
+
== Cardiac MRI Toolkit ==
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
== CMF Registration ==
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+
=== Voxelbase Registration ===
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+
== Converters ==
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
+
== Developer Tools ==
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
+
* Double Arrays    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
=== DICOM Plugins ===
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* DICOMLongitudinal PETCTPlugin
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
+
* Multi Volume Importer Plugin
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+
* Dicom Rt Import Plugin
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* DICOMDiffusion Volume Plugin
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* DICOMSegmentation Plugin
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* Dicom Sro Import Plugin
* [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
+
* DICOMScalar Volume Plugin
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* DICOMSlicer Data Bundle Plugin
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+
=== Editor Extensions ===
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
=== Matlab ===
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
== Diffusion ==
* [[Documentation/4.4/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
+
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
=== Diffusion Data Conversion ===
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* DWIConvert    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
=== Diffusion Tensor Images ===
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+
=== Diffusion Weighted Images ===
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [[Documentation/4.4/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
 +
=== FiberAnalysis ===
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
=== Tractography ===
 +
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 +
== Editor Effects ==
 +
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 +
== EditorEffect ==
 +
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 +
== Endoscopy ==
 +
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 +
== Examples ==
 +
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 +
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
== Exporter ==
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 +
== File ==
 +
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
== Filtering ==
 +
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
 
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
=== Arithmetic ===
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
= Modules by category =
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
37 categories:
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
* [
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli
 
=== Converters ===
 
=== Converters ===
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
=== Diffusion ===
+
=== Informatics ===
==== Denoising ====
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
+
==== TestCases ====
==== Diffusion Data Conversion ====
+
* Reporting Self Test
* DTIimport   <small>(cli, built-in)</small>
+
* Label To DICOMSEGConverter Self Test
* DTIexport   <small>(cli, built-in)</small>
+
== XNATSlicer ==
=== Filtering ===
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
+
= Modules by name =
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
+
218 modules:
=== Registration ===
+
* [http://www.nitrc.org/projects/abc ABC]   <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* Test Grid Transform Registration   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
=== Work in Progress ===
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
==== Diffusion Tensor ====
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
===== Test =====
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Diffusion Tensor Test   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
== Mesh Generation ==
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== MeshGeneration ==
 
 
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
== Microscopy ==
+
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* BRAINSResize    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* BRAINSROIAuto    <small>(cli, built-in)</small>
== Multidimensional data ==
+
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
== MultiVolume Support ==
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
== Perk Tutor ==
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Plastimatch ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/4.4/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 +
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
 +
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
 +
* [[Documentation/4.4/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
 +
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
=== Registration ===
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
=== Utilities ===
 
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Quantification ==
 
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
 
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
=== ChangeQuantification ===
 
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== Radiotherapy ==
 
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
== Registration ==
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* BRAINSResize   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
+
* DWIConvert   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
* Perform Metric Test    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
=== Specialized ===
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
== Segmentation ==
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
=== Specialized ===
 
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* EMSegment Quick    <small>(loadable, built-in)</small>
* BRAINSROIAuto   <small>(cli, built-in)</small>
+
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
== Shape Analysis ==
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
== Slicelets ==
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 +
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]   <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 +
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 +
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 +
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
== Surface Models ==
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
== Testing ==
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Self Tests
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
* CLIROITest    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* CLI4Test
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Threshold Threading Test
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* Performance Tests
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* Slicer MRBTest
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
=== IGT Tests ===
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* Breach Warning Self Test
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* Watchdog Self Test
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
=== SlicerRT Tests ===
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* Dicom Rt Import Self Test
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Batch Contour Conversion]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
=== TestCases ===
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
* Slice Link Logic   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Atlas Tests
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* RSNAQuant Tutorial
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* test tractography display
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* slicer Close Crash Bug2590
+
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Subject Hierarchy Generic Self Test
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Charting   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
* Scene Performance   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Neurosurgical Planning Tutorial Markups Self Test
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
* Markups In Compare Viewers Self Test
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
* fiber visibility crash2438
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* scene Import2428
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* RSNAVis Tutorial
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* JRC2013Vis
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* RSNA2012Prostate Demo
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
* Add Many Markups Fiducial Test
+
* [[Documentation/4.4/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Colors Scalar Bar Self Test
+
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
* Markups In Views Self Test
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
* Subject Hierarchy Core Plugins Self Test
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
* Change Tracker Self Test
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
* Fiducial Layout Switch Bug1914
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
* View Controllers Slice Interpolation Bug1926
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
* Slicer4Minute   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* label Toggle Bug2049
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
== Unspecified ==
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
* BRAINSDWICleanup    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
== Utilities ==
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [[Documentation/4.4/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* Perform Metric Test    <small>(cli, built-in)</small>
=== BRAINS ===
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* BRAINSTransform Convert    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
== Vascular Modeling Toolkit ==
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
== Wizards ==
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
== Work in Progress ==
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
=== Converters ===
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
=== Informatics ===
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 +
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
==== TestCases ====
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
* Reporting Self Test
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* Label To DICOMSEGConverter Self Test
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
== XNATSlicer ==
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
= Modules by contributing organization =
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
73 contributing organizations:
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [[#Asclepios_INRIA|Asclepios INRIA]]
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [[#AZE_R_D|AZE R&D]]
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[#Boston_Children_s_Hospital|Boston Children's Hospital]]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [[#BWH|BWH]]
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [[#BWH.2C_SPL|BWH, SPL]]
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
* [[#BWH.2C_SUMS|BWH, SUMS]]
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* [[#BWH.2FUAB|BWH/UAB]]
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
* [[#CARMA|CARMA]]
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China.29.3B_Xiaolei_Chen.2C_Jiashu_Zhang.28Department_of_Neurosurgery.2C_PLA_General_Hospital.2C_Beijing.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China]]
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [[#CRTC|CRTC]]
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* [[#gatech|gatech]]
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [[#GE|GE]]
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[#Georgia_Tech|Georgia Tech]]
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [[#IBM|IBM]]
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [[#Isomics|Isomics]]
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* [[#Isomics_Inc.|Isomics Inc.]]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [[#Isomics.2C_pieper.40isomics.com|Isomics, pieper@isomics.com]]
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
* [[#Kingston_General_Hospital|Kingston General Hospital]]
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* [[#Kitware|Kitware]]
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
* [[#Kitware.29|Kitware)]]
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
* [[#MGH|MGH]]
+
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* [[#MGH.2C_Boston|MGH, Boston]]
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* [[#Moka_Creative.2C_LLC.2C_kumar.sunil.p.40gmail.com|Moka Creative, LLC, kumar.sunil.p@gmail.com]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[#MSC.2FNLM|MSC/NLM]]
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [[#Noware|Noware]]
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [[#Orobix|Orobix]]
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]]
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* [[#PerkLab.2C_Queen_s_Universit|Perk Lab, Queen's Universit]]
+
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
* [[#PerkLab.2C_Queen_s_University|Perk Lab, Queen's University]]
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
* [[#PMH|PMH]]
+
* [http://slicer.vmtk.org/ Vesselness Filtering]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[#PMH.2C_Toronto|PMH, Toronto]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[#Princess_Margaret_Cancer_Centre|Princess Margaret Cancer Centre]]
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* [[#Queen_s|Queen's]]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [[#Queen_s_Universit|Queen's Universit]]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [[#Queen_s_University|Queen's University]]
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* [[#Queen_s_University.29_Jaime_Garcia-Guevara_.28Queen_s_University|Queen's University) Jaime Garcia-Guevara (Queen's University]]
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[#Radiation_Medicine_Program.2C_Princess_Margaret_Hospital.2C_University_Health_Network_Toronto|Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto]]
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* [[#RMP.2C_PMH|RMP, PMH]]
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
* [[#SAIC-Frederick.2C_NCI-Frederick|SAIC-Frederick, NCI-Frederick]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[#SBU|SBU]]
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
* [[#SCI_Institute|SCI Institute]]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
* [[#Shiga_University_of_Medical_Science|Shiga University of Medical Science]]
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [[#Shiga_University_of_Medical_Science_in_Japan|Shiga University of Medical Science in Japan]]
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
* [[#Shiga_University_of_Medical_Science.2C_Japan.2C_SPL|Shiga University of Medical Science, Japan, SPL]]
+
= Modules by contributing organization =
* [[#SINAPSE|SINAPSE]]
+
73 contributing organizations:
* [[#SNR|SNR]]
+
* [[#Asclepios_INRIA|Asclepios INRIA]]
* [[#SPL|SPL]]
+
* [[#AZE_R_D|AZE R&D]]
* [[#SPL_B_W_Harvard|SPL B&W Harvard]]
+
* [[#Boston_Children_s_Hospital|Boston Children's Hospital]]
* [[#SPL.2C_BWH|SPL, BWH]]
+
* [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]]
* [[#SPL.2C_BWH.2C_UPenn|SPL, BWH, UPenn]]
+
* [[#BWH|BWH]]
* [[#SUMS|SUMS]]
+
* [[#BWH.2C_SPL|BWH, SPL]]
* [[#Surgical_Planning_Lab|Surgical Planning Lab]]
+
* [[#BWH.2C_SUMS|BWH, SUMS]]
* [[#UAB|UAB]]
+
* [[#BWH.2FUAB|BWH/UAB]]
* [[#UHN.2C_Toronto|UHN, Toronto]]
+
* [[#CARMA|CARMA]]
* [[#Uiowa|Uiowa]]
+
* [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China.29.3B_Xiaolei_Chen.2C_Jiashu_Zhang.28Department_of_Neurosurgery.2C_PLA_General_Hospital.2C_Beijing.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China]]
* [[#UIowa|UIowa]]
+
* [[#CRTC|CRTC]]
* [[#UNC|UNC]]
+
* [[#gatech|gatech]]
* [[#Univ_of_Michigan|Univ of Michigan]]
+
* [[#GE|GE]]
* [[#Univ._of_Iowa|Univ. of Iowa]]
+
* [[#Georgia_Tech|Georgia Tech]]
* [[#University__Magna_Graecia__of_Catanzaro|University 'Magna Graecia' of Catanzaro]]
+
* [[#IBM|IBM]]
* [[#University_College_Cork|University College Cork]]
+
* [[#Isomics|Isomics]]
* [[#University_of_Heidelberg|University of Heidelberg]]
+
* [[#Isomics_Inc.|Isomics Inc.]]
* [[#University_of_Iowa|University of Iowa]]
+
* [[#Isomics.2C_pieper.40isomics.com|Isomics, pieper@isomics.com]]
* [[#University_of_Iowa.29_and_Andrey_Fedorov_.28SPL|University of Iowa) and Andrey Fedorov (SPL]]
+
* [[#Kingston_General_Hospital|Kingston General Hospital]]
* [[#UPenn|UPenn]]
+
* [[#Kitware|Kitware]]
* [[#Utah|Utah]]
+
* [[#Kitware.29|Kitware)]]
* [[#UVa|UVa]]
+
* [[#MGH|MGH]]
* [[#UWA|UWA]]
+
* [[#MGH.2C_Boston|MGH, Boston]]
* [[#WashU-St._Louis.2C_dmarcus.40wustl.edu|Wash U-St. Louis, dmarcus@wustl.edu]]
+
* [[#Moka_Creative.2C_LLC.2C_kumar.sunil.p.40gmail.com|Moka Creative, LLC, kumar.sunil.p@gmail.com]]
* [[#while_at_GE|while at GE]]
+
* [[#MSC.2FNLM|MSC/NLM]]
== Asclepios INRIA ==
+
* [[#Noware|Noware]]
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
+
* [[#Orobix|Orobix]]
== AZE R&D ==
+
* [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]]
* JRC2013Vis
+
* [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]]
== Boston Children's Hospital ==
+
* [[#PerkLab.2C_Queen_s_Universit|Perk Lab, Queen's Universit]]
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[#PerkLab.2C_Queen_s_University|Perk Lab, Queen's University]]
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[#PMH|PMH]]
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[#PMH.2C_Toronto|PMH, Toronto]]
== Brigham and Women's Hospital ==
+
* [[#Princess_Margaret_Cancer_Centre|Princess Margaret Cancer Centre]]
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[#Queen_s|Queen's]]
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[#Queen_s_Universit|Queen's Universit]]
* test tractography display
+
* [[#Queen_s_University|Queen's University]]
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[#Queen_s_University.29_Jaime_Garcia-Guevara_.28Queen_s_University|Queen's University) Jaime Garcia-Guevara (Queen's University]]
== BWH ==
+
* [[#Radiation_Medicine_Program.2C_Princess_Margaret_Hospital.2C_University_Health_Network_Toronto|Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto]]
* Add Many Markups Fiducial Test
+
* [[#RMP.2C_PMH|RMP, PMH]]
* Change Tracker Self Test
+
* [[#SAIC-Frederick.2C_NCI-Frederick|SAIC-Frederick, NCI-Frederick]]
* Colors Scalar Bar Self Test
+
* [[#SBU|SBU]]
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [[#SCI_Institute|SCI Institute]]
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
* [[#Shiga_University_of_Medical_Science|Shiga University of Medical Science]]
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
+
* [[#Shiga_University_of_Medical_Science_in_Japan|Shiga University of Medical Science in Japan]]
* Fiducial Layout Switch Bug1914
+
* [[#Shiga_University_of_Medical_Science.2C_Japan.2C_SPL|Shiga University of Medical Science, Japan, SPL]]
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[#SINAPSE|SINAPSE]]
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
+
* [[#SNR|SNR]]
* Markups In Compare Viewers Self Test
+
* [[#SPL|SPL]]
* Markups In Views Self Test
+
* [[#SPL_B_W_Harvard|SPL B&W Harvard]]
* Neurosurgical Planning Tutorial Markups Self Test
+
* [[#SPL.2C_BWH|SPL, BWH]]
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[#SPL.2C_BWH.2C_UPenn|SPL, BWH, UPenn]]
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[#SUMS|SUMS]]
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
+
* [[#Surgical_Planning_Lab|Surgical Planning Lab]]
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
* [[#UAB|UAB]]
== BWH, SPL ==
+
* [[#UHN.2C_Toronto|UHN, Toronto]]
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
+
* [[#Uiowa|Uiowa]]
== BWH, SUMS ==
+
* [[#UIowa|UIowa]]
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[#UNC|UNC]]
== BWH/UAB ==
+
* [[#Univ_of_Michigan|Univ of Michigan]]
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]   <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[#Univ._of_Iowa|Univ. of Iowa]]
== CARMA ==
+
* [[#University__Magna_Graecia__of_Catanzaro|University 'Magna Graecia' of Catanzaro]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#University_College_Cork|University College Cork]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#University_of_Heidelberg|University of Heidelberg]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#University_of_Iowa|University of Iowa]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#University_of_Iowa.29_and_Andrey_Fedorov_.28SPL|University of Iowa) and Andrey Fedorov (SPL]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#UPenn|UPenn]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#Utah|Utah]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#UVa|UVa]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#UWA|UWA]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#WashU-St._Louis.2C_dmarcus.40wustl.edu|Wash U-St. Louis, dmarcus@wustl.edu]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[#while_at_GE|while at GE]]
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
== Asclepios INRIA ==
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
 
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== CRTC ==
 
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
== gatech ==
+
== AZE R&D ==
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* JRC2013Vis
== GE ==
+
== Boston Children's Hospital ==
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Charting    <small>(scripted, built-in)</small>
+
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
== Brigham and Women's Hospital ==
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* Diffusion Tensor Test   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
* DWIConvert    <small>(cli, built-in)</small>
+
* test tractography display
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
== BWH ==
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
+
* Add Many Markups Fiducial Test
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
+
* Change Tracker Self Test
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* Colors Scalar Bar Self Test
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* Fiducial Layout Switch Bug1914
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
+
* Markups In Compare Viewers Self Test
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
+
* Markups In Views Self Test
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* Neurosurgical Planning Tutorial Markups Self Test
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Slice Link Logic   <small>(scripted, built-in)</small>
+
* Volume Rendering Scene Close   <small>(scripted, built-in)</small>
* Slicer4Minute   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
== BWH, SPL ==
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
+
== BWH, SUMS ==
* View Controllers Slice Interpolation Bug1926
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+
== BWH/UAB ==
== Georgia Tech ==
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
== CARMA ==
== IBM ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Isomics ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Atlas Tests
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* fiber visibility crash2438
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
+
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
* label Toggle Bug2049
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+
== CRTC ==
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* Performance Tests
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
== gatech ==
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
* RSNA2012Prostate Demo
+
== GE ==
* RSNAQuant Tutorial
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
* RSNAVis Tutorial
+
* Charting    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* scene Import2428
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
* Self Tests
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
+
* Diffusion Tensor Test   <small>(cli, built-in)</small>
* slicer Close Crash Bug2590
+
* DWIConvert    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
* Tractography Interactive Seeding   <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
* [http://slicer.vmtk.org/ Vesselness Filtering]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 +
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 +
* Slice Link Logic    <small>(scripted, built-in)</small>
 +
* Slicer4Minute    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
+
* View Controllers Slice Interpolation Bug1926
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
== Isomics Inc. ==
+
== Georgia Tech ==
* DICOMDiffusion Volume Plugin
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* DICOMLongitudinal PETCTPlugin
+
== IBM ==
* DICOMScalar Volume Plugin
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
* DICOMSlicer Data Bundle Plugin
+
== Isomics ==
* Slicer MRBTest
+
* Atlas Tests
* Threshold Threading Test
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
== Isomics, pieper@isomics.com ==
+
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
== Kingston General Hospital ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Kitware ==
 
* [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
 
 
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
* Double Arrays    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* Performance Tests
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
+
* RSNA2012Prostate Demo
 +
* RSNAQuant Tutorial
 +
* RSNAVis Tutorial
 
* [[Documentation/4.4/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
* Scene Performance    <small>(scripted, built-in)</small>
+
* scene Import2428
 +
* Self Tests
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 +
* slicer Close Crash Bug2590
 
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+
* Tractography Interactive Seeding   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
 
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Units|Units]]    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 +
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
+
== Isomics Inc. ==
== Kitware) ==
+
* DICOMDiffusion Volume Plugin
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* DICOMLongitudinal PETCTPlugin
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* DICOMScalar Volume Plugin
== MGH ==
+
* DICOMSlicer Data Bundle Plugin
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* Slicer MRBTest
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* Threshold Threading Test
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
== Isomics, pieper@isomics.com ==
== MGH, Boston ==
 
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
 
 
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
== MSC/NLM ==
+
== Kingston General Hospital ==
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 +
== Kitware ==
 +
* [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
 +
* Double Arrays    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
 +
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 +
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 +
* fiber visibility crash2438
 +
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 +
* label Toggle Bug2049
 +
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 +
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 +
* [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 +
* [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
 +
* Scene Performance    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
== Noware ==
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 +
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 +
== Kitware) ==
 +
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 +
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 +
== MGH ==
 +
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 +
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
== MGH, Boston ==
 +
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
 +
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
== MSC/NLM ==
 +
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 +
== Noware ==
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
== Orobix ==
 
== Orobix ==
Line 2,827: Line 2,827:
 
== XNATSlicer ==
 
== XNATSlicer ==
 
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
= Extensions by name =
+
= Extensions by category =
57 extensions:
+
25 categories:
* [http://www.nitrc.org/projects/abc ABC]
+
* [[#Cardiac|Cardiac]]
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
+
* [[#Cardiac_MRI_toolkit|Cardiac MRI toolkit]]
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
+
* [[#Converters|Converters]]
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
+
* [[#Developer_Tools|Developer Tools]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
+
* [[#Diffusion|Diffusion]]
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
+
* [[#Editor_Effects|Editor Effects]]
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
+
* [[#Exporter|Exporter]]
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
+
* [[#Filtering|Filtering]]
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
+
** [[#Morphology|Morphology]]
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
+
* [[#IGT|IGT]]
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
+
* [[#Informatics|Informatics]]
 +
* [[#Mesh_Generation|Mesh Generation]]
 +
* [[#Microscopy|Microscopy]]
 +
* [[#Multidimensional_data|Multidimensional data]]
 +
* [[#Quantification|Quantification]]
 +
* [[#Radiotherapy|Radiotherapy]]
 +
* [[#Registration|Registration]]
 +
* [[#Remote|Remote]]
 +
* [[#Scoliosis|Scoliosis]]
 +
* [[#Segmentation|Segmentation]]
 +
* [[#Shape_Analysis|Shape Analysis]]
 +
* [[#Tractography|Tractography]]
 +
* [[#Training|Training]]
 +
* [[#Utilities|Utilities]]
 +
* [[#Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 +
* [[#Wizards|Wizards]]
 +
== Cardiac ==
 +
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 +
== Cardiac MRI toolkit ==
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
 +
== Converters ==
 +
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 +
== Developer Tools ==
 +
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
+
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
 +
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
 +
== Diffusion ==
 
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
 
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
 +
== Editor Effects ==
 +
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 +
== Exporter ==
 +
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 +
== Filtering ==
 +
=== Morphology ===
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
+
== IGT ==
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
 
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
+
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
 +
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
 +
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 +
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
 
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
+
== Informatics ==
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
+
== Mesh Generation ==
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
+
== Microscopy ==
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
+
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
+
== Multidimensional data ==
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
+
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 +
== Quantification ==
 +
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
 
* [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]]
 
* [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
 
 
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
+
== Radiotherapy ==
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
+
== Registration ==
 +
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 +
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 +
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 +
== Remote ==
 +
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 +
== Scoliosis ==
 
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
 
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
+
== Segmentation ==
* [http://slicer.vmtk.org/ VMTK]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
+
* [http://www.nitrc.org/projects/abc ABC]
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
 
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 +
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
 +
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 +
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 +
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 +
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
 +
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 +
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 +
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 +
== Shape Analysis ==
 +
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 +
== Tractography ==
 +
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 +
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 +
== Training ==
 +
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 +
== Utilities ==
 
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
+
== Vascular Modeling Toolkit ==
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
+
* [http://slicer.vmtk.org/ VMTK]
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
+
== Wizards ==
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
+
= Extensions by name =
= Extensions by category =
+
57 extensions:
25 categories:
+
* [http://www.nitrc.org/projects/abc ABC]
* [[#Cardiac|Cardiac]]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
* [[#Cardiac_MRI_toolkit|Cardiac MRI toolkit]]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
* [[#Converters|Converters]]
 
* [[#Developer_Tools|Developer Tools]]
 
* [[#Diffusion|Diffusion]]
 
* [[#Editor_Effects|Editor Effects]]
 
* [[#Exporter|Exporter]]
 
* [[#Filtering|Filtering]]
 
** [[#Morphology|Morphology]]
 
* [[#IGT|IGT]]
 
* [[#Informatics|Informatics]]
 
* [[#Mesh_Generation|Mesh Generation]]
 
* [[#Microscopy|Microscopy]]
 
* [[#Multidimensional_data|Multidimensional data]]
 
* [[#Quantification|Quantification]]
 
* [[#Radiotherapy|Radiotherapy]]
 
* [[#Registration|Registration]]
 
* [[#Remote|Remote]]
 
* [[#Scoliosis|Scoliosis]]
 
* [[#Segmentation|Segmentation]]
 
* [[#Shape_Analysis|Shape Analysis]]
 
* [[#Tractography|Tractography]]
 
* [[#Training|Training]]
 
* [[#Utilities|Utilities]]
 
* [[#Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Wizards|Wizards]]
 
== Cardiac ==
 
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
== Cardiac MRI toolkit ==
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
+
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
== Converters ==
+
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 +
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 +
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 +
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
 +
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
 +
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]
 +
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
 +
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
 +
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
 +
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 +
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 +
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 +
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 +
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
 +
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
 +
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
 +
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 +
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 +
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 +
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 +
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
 +
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 +
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 +
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 +
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
 +
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 +
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
 +
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 +
* [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
== Developer Tools ==
+
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
+
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]
+
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
* [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
== Diffusion ==
+
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
== Editor Effects ==
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 +
* [http://slicer.vmtk.org/ VMTK]
 +
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 +
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 +
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 +
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 +
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 +
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 +
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 +
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 +
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 +
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
== Exporter ==
 
* [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== Filtering ==
 
=== Morphology ===
 
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]]
 
== IGT ==
 
* [[Documentation/4.4/Extensions/PortPlacement|Port Placement]]
 
* [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]]
 
* [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]]
 
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
 
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
 
* [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]]
 
* [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]]
 
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
 
* [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]]
 
== Informatics ==
 
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
 
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 
== Mesh Generation ==
 
* [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
 
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]]
 
== Microscopy ==
 
* [[Documentation/4.4/Extensions/IASEM|IASEM]]
 
== Multidimensional data ==
 
* [[Documentation/4.4/Extensions/MultidimData|Multidim Data]]
 
== Quantification ==
 
* [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]]
 
* [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]]
 
* [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]]
 
== Radiotherapy ==
 
* [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
== Registration ==
 
* [[Documentation/4.4/Extensions/CMFreg|CMFreg]]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
 
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
== Remote ==
 
 
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
 
* [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]]
== Scoliosis ==
 
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]]
 
== Segmentation ==
 
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
 
* [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]]
 
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]]
 
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
 
* [[Documentation/4.4/Extensions/OpenCAD|Open CAD]]
 
* [[Documentation/4.4/Extensions/MABMIS|MABMIS]]
 
* [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]]
 
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
 
== Shape Analysis ==
 
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 
== Tractography ==
 
* [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]]
 
* [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]]
 
== Training ==
 
* [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]]
 
== Utilities ==
 
* [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]]
 
== Vascular Modeling Toolkit ==
 
* [http://slicer.vmtk.org/ VMTK]
 
== Wizards ==
 
* [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]]
 
 
= Extensions by contributing organization =
 
= Extensions by contributing organization =
 
55 contributing organizations:
 
55 contributing organizations:

Revision as of 00:17, 17 April 2015

Home < Documentation < 4.4 < ModuleExtensionListing



List of extensions known to be broken

Modules by category

37 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport (cli, built-in)
  • DTIexport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

Slicelets

Surface Models

Testing

  • Self Tests
  • CLIROITest (cli, built-in)
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test
  • Watchdog Self Test

SlicerRT Tests

TestCases

  • Slice Link Logic (scripted, built-in)
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close (scripted, built-in)
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • Charting (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Neurosurgical Planning Tutorial Markups Self Test
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • View Controllers Slice Interpolation Bug1926
  • Slicer4Minute (scripted, built-in)
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup (cli, built-in)

Utilities

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

XNATSlicer

Modules by name

218 modules:

Modules by contributing organization

73 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Boston Children's Hospital

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, pieper@isomics.com

Kingston General Hospital

Kitware

Kitware)

MGH

MGH, Boston

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's Universit

PerkLab, Queen's University

PMH

PMH, Toronto

Princess Margaret Cancer Centre

Queen's

Queen's Universit

Queen's University

Queen's University) Jaime Garcia-Guevara (Queen's University

  • Breach Warning Self Test
  • Watchdog Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

RMP, PMH

  • Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science

Shiga University of Medical Science in Japan

Shiga University of Medical Science, Japan, SPL

SINAPSE

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

SUMS

Surgical Planning Lab

UAB

UHN, Toronto

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

University 'Magna Graecia' of Catanzaro

University College Cork

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing individual

191 contributing individuals:

/

  • Dicom Rt Import Plugin

a

  • Dicom Rt Import Plugin

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)
  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

Amelie Meyer

Analysis Laboratory

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Anuja Sharma

Arie Nakhmani

Atsushi Yamada

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

Benjamin Yvernault

Bill Lorensen

Brad Davis

  • EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Brian Zenger

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

c

  • Dicom Rt Import Plugin

Carl-Fredrik Westin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

Charles Marion

Christian Bauer

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dinggang Shen

Dirk Padfield

Dominik Meier

e

  • Dicom Rt Import Plugin

er

Ethan Ulrich

Eugene Kholmovski

ez

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Harris

Greg Sharp

Gregory Sharp

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Hans Johnson

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

i

  • Dicom Rt Import Plugin

Ipek Oguz

Ivan Kolesov

Jaime Garcia-Guevara

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

Johan Andruejol

  • Units (loadable, built-in)

John Buatti

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

K

  • Dicom Rt Import Plugin

Kent Williams

Kent WIlliams

  • BRAINSStrip Rotation (cli, built-in)

Kevin Alex

Kevin Wang

Kilian Pohl

Koichiro Murakami

Kyle Sunderl

l

  • Dicom Rt Import Plugin

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

m

  • Dicom Rt Import Plugin

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Markus van Tol

Martin Styner

Mason Winsauer

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Neuro Image Resarch

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

p

  • Dicom Rt Import Plugin

Paolo Zaffino

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pierre Seroul

Pietro Nardelli

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

Polina Goll

  • EMSegment Command Line (cli, built-in)

Qing Pan

r

  • Dicom Rt Import Plugin

R

  • Dicom Rt Import Plugin

Raul San Jose

Reinhard Beichel

Reinhard R. Beichel

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

S

Salma Bengali

Sam Song

Santiago Aja Fern

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stefan Lienhard

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Sylvain Gouttard

t

  • Dicom Rt Import Plugin

Tamas Ungi

the University of North Carolina at Chapel Hill

Tina Kapur

Tobias Penzkofer

Tohru Tani

UNC Medical School

UofM School Of Dentistry

UofM School of Dentistry

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

Vinicius Boen

Vivek Narayan

Wendy Plesniak

Xiaodong Tao

Xiaofeng Liu

Xiaojun Chen

y Wells

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yong Zhang

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Yundi Shi

Modules by type

3 types:

cli

loadable

scripted

Modules by extension

58 extensions:

ABC

  • ABC (cli, bundled in ABC extension)

AirwaySegmentation

builtin

Cardiac_MRI_Toolkit

CardiacAgastonMeasures

CarreraSlice

CBC_3D_I2MConversion

ChangeTracker

CleaverExtension

CMFreg

CornerAnnotation

CurveMaker

DeveloperToolsForExtensions

DiceComputation

DTIAtlasFiberAnalyzer

ErodeDilateLabel

FastGrowCutEffect

FinslerTractography

GelDosimetryAnalysis

GyroGuide

IASEM

iGyne

ImageMaker

IntensitySegmenter

LAScarSegmenter

LongitudinalPETCT

MABMIS