Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev edc772c). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
(This page has been updated using script slicer_wiki_extension_module_listing.py (rev 05c5c23). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
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== BRAINS ==
 
== BRAINS ==
 
=== LabelStatistics ===
 
=== LabelStatistics ===
* BRAINSLabel Stats
+
* BRAINSLabel Stats   <small>(cli, built-in)</small>
 
== Cardiac MRI Toolkit ==
 
== Cardiac MRI Toolkit ==
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== CMF Registration ==
 
== CMF Registration ==
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/Downsize|Downsize]]
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
=== Voxelbase Registration ===
 
=== Voxelbase Registration ===
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/Growing|Growing]]
+
* [[Documentation/4.4/Modules/Growing|Growing]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Converters ==
 
== Converters ==
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
 
== Developer Tools ==
 
== Developer Tools ==
 
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
 
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Double Arrays
+
* Double Arrays   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
* [[Documentation/4.4/Modules/Cameras|Cameras]]
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMLongitudinal PETCTPlugin
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* DICOMSlicer Data Bundle Plugin
 
* DICOMSlicer Data Bundle Plugin
 
=== Editor Extensions ===
 
=== Editor Extensions ===
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
=== Matlab ===
 
=== Matlab ===
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
== Diffusion ==
 
== Diffusion ==
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
* DICOM2Full Brain Tractography
+
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
* DWIConvert
+
* DWIConvert   <small>(cli, built-in)</small>
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* Tractography Interactive Seeding
+
* Tractography Interactive Seeding   <small>(loadable, built-in)</small>
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
=== FiberAnalysis ===
 
=== FiberAnalysis ===
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
=== Tractography ===
 
=== Tractography ===
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* Fiber Bundle Label Select
+
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
 
== Editor Effects ==
 
== Editor Effects ==
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== Endoscopy ==
 
== Endoscopy ==
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
 
== Examples ==
 
== Examples ==
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]   <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]   <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]   <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
+
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]   <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== Exporter ==
 
== Exporter ==
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
== File ==
 
== File ==
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Filtering ==
 
== Filtering ==
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
 
=== Arithmetic ===
 
=== Arithmetic ===
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
 
=== Denoising ===
 
=== Denoising ===
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
 
=== Morphology ===
 
=== Morphology ===
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
 
== IGT ==
 
== IGT ==
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Informatics ==
 
== Informatics ==
* [[Documentation/4.4/Modules/Annotations|Annotations]]
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Markups|Markups]]
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Units|Units]]
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/DICOM|DICOM]]
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/SampleData|Sample Data]]
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Data|Data]]
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/Colors|Colors]]
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
== Legacy ==
 
== Legacy ==
 
=== Converters ===
 
=== Converters ===
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
 
=== Diffusion ===
 
=== Diffusion ===
 
==== Denoising ====
 
==== Denoising ====
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
==== Diffusion Data Conversion ====
 
==== Diffusion Data Conversion ====
* DTIimport
+
* DTIimport   <small>(cli, built-in)</small>
* DTIexport
+
* DTIexport   <small>(cli, built-in)</small>
 
=== Filtering ===
 
=== Filtering ===
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
 
=== Registration ===
 
=== Registration ===
* Test Grid Transform Registration
+
* Test Grid Transform Registration   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
 
=== Work in Progress ===
 
=== Work in Progress ===
 
==== Diffusion Tensor ====
 
==== Diffusion Tensor ====
 
===== Test =====
 
===== Test =====
* Diffusion Tensor Test
+
* Diffusion Tensor Test   <small>(cli, built-in)</small>
 
== Mesh Generation ==
 
== Mesh Generation ==
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== MeshGeneration ==
 
== MeshGeneration ==
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
== Microscopy ==
 
== Microscopy ==
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
== Multidimensional data ==
 
== Multidimensional data ==
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== MultiVolume Support ==
 
== MultiVolume Support ==
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
== Perk Tutor ==
 
== Perk Tutor ==
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== Plastimatch ==
 
== Plastimatch ==
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
=== Registration ===
 
=== Registration ===
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
=== Utilities ===
 
=== Utilities ===
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Quantification ==
 
== Quantification ==
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]   <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== Radiotherapy ==
 
== Radiotherapy ==
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/Isodose|Isodose]]
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/Contours|Contours]]
+
* [[Documentation/4.4/Modules/Contours|Contours]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Registration ==
 
== Registration ==
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/Transforms|Transforms]]
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* BRAINSResize
+
* BRAINSResize   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* Perform Metric Test
+
* Perform Metric Test   <small>(cli, built-in)</small>
 
=== Specialized ===
 
=== Specialized ===
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* VBRAINSDemon Warp
+
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/Reformat|Reformat]]
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
 
== Segmentation ==
 
== Segmentation ==
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://www.nitrc.org/projects/abc ABC]
+
* [http://www.nitrc.org/projects/abc ABC]   <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* EMSegment Quick
+
* EMSegment Quick   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
=== Specialized ===
 
=== Specialized ===
* EMSegment Command Line
+
* EMSegment Command Line   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* BRAINSROIAuto
+
* BRAINSROIAuto   <small>(cli, built-in)</small>
 
== Shape Analysis ==
 
== Shape Analysis ==
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]   <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
== Slicelets ==
 
== Slicelets ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]   <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]
+
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]   <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Surface Models ==
 
== Surface Models ==
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
 
== Testing ==
 
== Testing ==
 
* Self Tests
 
* Self Tests
* CLIROITest
+
* CLIROITest   <small>(cli, built-in)</small>
 
* CLI4Test
 
* CLI4Test
 
* Threshold Threading Test
 
* Threshold Threading Test
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* Performance Tests
 
* Performance Tests
 
* Slicer MRBTest
 
* Slicer MRBTest
Line 582: Line 582:
 
* Dicom Rt Import Self Test
 
* Dicom Rt Import Self Test
 
=== TestCases ===
 
=== TestCases ===
* Slice Link Logic
+
* Slice Link Logic   <small>(scripted, built-in)</small>
 
* Atlas Tests
 
* Atlas Tests
 
* RSNAQuant Tutorial
 
* RSNAQuant Tutorial
* Volume Rendering Scene Close
+
* Volume Rendering Scene Close   <small>(scripted, built-in)</small>
 
* test tractography display
 
* test tractography display
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
* Charting
+
* Charting   <small>(scripted, built-in)</small>
* Scene Performance
+
* Scene Performance   <small>(scripted, built-in)</small>
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]
+
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]   <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
 
* scene Import2428
 
* scene Import2428
Line 606: Line 606:
 
* Change Tracker Self Test
 
* Change Tracker Self Test
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
* Slicer4Minute
+
* Slicer4Minute   <small>(scripted, built-in)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
 
== Unspecified ==
 
== Unspecified ==
* BRAINSDWICleanup
+
* BRAINSDWICleanup   <small>(cli, built-in)</small>
 
== Utilities ==
 
== Utilities ==
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
* BRAINSStrip Rotation
+
* BRAINSStrip Rotation   <small>(cli, built-in)</small>
* EMSegment Transform To New Format
+
* EMSegment Transform To New Format   <small>(cli, built-in)</small>
* [[Documentation/4.4/Modules/DataStore|Data Store]]
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
 
=== BRAINS ===
 
=== BRAINS ===
* BRAINSTransform Convert
+
* BRAINSTransform Convert   <small>(cli, built-in)</small>
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
* [http://slicer.vmtk.org/ Vesselness Filtering]
+
* [http://slicer.vmtk.org/ Vesselness Filtering]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://slicer.vmtk.org/ Centerline Computation]
+
* [http://slicer.vmtk.org/ Centerline Computation]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://slicer.vmtk.org/ Level Set Segmentation]
+
* [http://slicer.vmtk.org/ Level Set Segmentation]   <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Wizards ==
 
== Wizards ==
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== Work in Progress ==
 
== Work in Progress ==
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
=== Converters ===
 
=== Converters ===
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
=== Informatics ===
 
=== Informatics ===
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]   <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
==== TestCases ====
 
==== TestCases ====
 
* Reporting Self Test
 
* Reporting Self Test
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 
== XNATSlicer ==
 
== XNATSlicer ==
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]   <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
= Modules by contributing organization =
 
= Modules by contributing organization =
 
71 contributing organizations:
 
71 contributing organizations:

Revision as of 08:38, 25 December 2014

Home < Documentation < 4.4 < ModuleExtensionListing



List of extensions known to be broken

Modules by name

215 modules:

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport (cli, built-in)
  • DTIexport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

Slicelets

Surface Models

Testing

  • Self Tests
  • CLIROITest (cli, built-in)
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test

SlicerRT Tests

  • NAMIC Tutorial 2013June Self Test
  • Dicom Rt Import Self Test

TestCases

  • Slice Link Logic (scripted, built-in)
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close (scripted, built-in)
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • View Controllers Slice Interpolation Bug1926
  • Charting (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Neurosurgical Planning Tutorial Markups Self Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Slicer4Minute (scripted, built-in)
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup (cli, built-in)

Utilities

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

XNATSlicer

Modules by contributing organization

71 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Boston Children's Hospital

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, pieper@isomics.com

Kingston General Hospital

Kitware

Kitware)

MGH

MGH, Boston

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

PMH, Toronto

Princess Margaret Cancer Centre

Queen's

Queen's Universit

Queen's University

Queen's University) Jaime Garcia-Guevara (Queen's University

  • Breach Warning Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

RMP, PMH

  • Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science in Japan

Shiga University of Medical Science, Japan, SPL

SINAPSE

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

SUMS

Surgical Planning Lab

UAB

UHN, Toronto

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

University 'Magna Graecia' of Catanzaro

University College Cork

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing individual

185 contributing individuals:

/

  • Dicom Rt Import Plugin

a

  • Dicom Rt Import Plugin

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)
  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

Amelie Meyer

Analysis Laboratory

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Anuja Sharma

Arie Nakhmani

Atsushi Yamada

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

Benjamin Yvernault

Bill Lorensen

Brad Davis

  • EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Brian Zenger

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

c

  • Dicom Rt Import Plugin

Carl-Fredrik Westin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

Charles Marion

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dinggang Shen

Dirk Padfield

Dominik Meier

e

  • Dicom Rt Import Plugin

er

Ethan Ulrich

Eugene Kholmovski

ez

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Harris

Greg Sharp

Gregory Sharp

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Hans Johnson

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

i

  • Dicom Rt Import Plugin

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

Johan Andruejol

  • Units (loadable, built-in)

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

K

  • Dicom Rt Import Plugin

Kent Williams

Kent WIlliams

  • BRAINSStrip Rotation (cli, built-in)

Kevin Alex

Kevin Wang

Kilian Pohl

Koichiro Murakami

Kyle Sunderl

l

  • Dicom Rt Import Plugin

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

m

  • Dicom Rt Import Plugin

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Martin Styner

Mason Winsauer

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Neuro Image Resarch

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

p

  • Dicom Rt Import Plugin

Paolo Zaffino

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pierre Seroul

Pietro Nardelli

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

Polina Goll

  • EMSegment Command Line (cli, built-in)

Qing Pan

R

  • Dicom Rt Import Plugin

r

  • Dicom Rt Import Plugin

Raul San Jose

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

S

Salma Bengali

Sam Song

Santiago Aja Fern

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stefan Lienhard

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Sylvain Gouttard

t

  • Dicom Rt Import Plugin

Tamas Ungi

the University of North Carolina at Chapel Hill

Tina Kapur

Tobias Penzkofer

Tohru Tani

UNC Medical School

UofM School Of Dentistry

UofM School of Dentistry

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

Vinicius Boen

Vivek Narayan

Wendy Plesniak

Xiaodong Tao

Xiaofeng Liu

Xiaojun Chen

y Wells

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yong Zhang

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Yundi Shi

Modules by type

3 types:

cli

loadable

scripted

Modules by extension

55 extensions:

ABC

  • ABC (cli, bundled in ABC extension)

AirwaySegmentation

builtin

Cardiac_MRI_Toolkit

CardiacAgastonMeasures

CarreraSlice

CBC_3D_I2MConversion

ChangeTracker

CleaverExtension

CMFreg

CornerAnnotation

CurveMaker

DiceComputation

DTIAtlasFiberAnalyzer

ErodeDilateLabel

FastGrowCutEffect

FinslerTractography

GelDosimetryAnalysis

GyroGuide

IASEM

iGyne

ImageMaker

IntensitySegmenter

LAScarSegmenter

LongitudinalPETCT

MABMIS

MatlabBridge

MeshToLabelMap

MultidimData

NeedleFinder

OpenCAD

PBNRR

PercutaneousApproachAnalysis

PerkTutor

PETDICOMExtension

PkModeling

PortPlacement

PyDevRemoteDebug

Reporting

ResectionPlanner

Scoliosis

SegmentationAidedRegistration

SlicerExtension-VMTK

SlicerIGT

SlicerRT

SlicerToKiwiExporter

SobolevSegmenter

SwissSkullStripper

TCIABrowser

ThingiverseBrowser

TrackerStabilizer

UKFTractography

VolumeClip

WindowLevelEffect

XNATSlicer

Extensions by name

54 extensions:

Extensions by category

25 categories:

Cardiac

Cardiac MRI toolkit

Converters

Developer Tools

Diffusion

Editor Effects

Exporter

Filtering

Morphology

IGT

Informatics

Mesh Generation

Microscopy

Multidimensional data

Quantification

Radiotherapy

Registration

Remote

Scoliosis

Segmentation

Shape Analysis

Tractography

Training

Utilities

Vascular Modeling Toolkit

Wizards

Extensions by contributing organization

54 contributing organizations:

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing individual

125 contributing individuals:

Akila Viswanathan

Alan Morris

Alex Yarmarkovich

Alireza Mehrtash

Allen Tannenbaum

Andinet Enquobahrie

Andras Lasso

Andre Mastmeyer

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Damato

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Carl-Fredrik Westin

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jiashu Zhang

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Junichi Tokuda

Karl Fritscher

Kent Williams

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nabgha Fahrat

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Patricio Vela

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pietro Nardelli

Qing Pan

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Ryan Eckbo

S

Salma Bengali

Sam Song

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Tina Kapur

Tobias Penzkofer

Vinicius Boen

Vivek Narayan

Xiaofeng Liu

Xiaojun Chen

Xiaolei Chen

y Wells

Yi Gao

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yundi Shi