Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev edc772c). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_)
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215 modules:
 
215 modules:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
* ACPCTransform    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Add Scalar Volumes    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
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* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* Annotations    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
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* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
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* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* BRAINSDemon Warp    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
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* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
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* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
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* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
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* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Colors    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
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* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
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* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
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* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
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* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Open IGTLink IF    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
= Modules by category =
 
= Modules by category =
 
36 categories:
 
36 categories:
Line 300: Line 300:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]
 
== CMF Registration ==
 
== CMF Registration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]
 
=== Voxelbase Registration ===
 
=== Voxelbase Registration ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]
+
* [[Documentation/4.4/Modules/Growing|Growing]]
 
== Converters ==
 
== Converters ==
* Vector To Scalar Volume
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]
* Crop Volume
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]
* Orient Scalar Volume
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]
* Create DICOMSeries
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]
 
== Developer Tools ==
 
== Developer Tools ==
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* Execution Model Tour
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]
 
* Double Arrays
 
* Double Arrays
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
* Cameras
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]
* Extension Wizard
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMLongitudinal PETCTPlugin
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* Multi Volume Importer Plugin
 
* Multi Volume Importer Plugin
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
* DICOMDiffusion Volume Plugin
 
* DICOMDiffusion Volume Plugin
Line 342: Line 342:
 
* DICOMSlicer Data Bundle Plugin
 
* DICOMSlicer Data Bundle Plugin
 
=== Editor Extensions ===
 
=== Editor Extensions ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]
 
=== Matlab ===
 
=== Matlab ===
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]
 
== Diffusion ==
 
== Diffusion ==
* Tractography Display
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]
 
* DICOM2Full Brain Tractography
 
* DICOM2Full Brain Tractography
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
 
* DWIConvert
 
* DWIConvert
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
* Resample DTIVolume
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]
* Diffusion Tensor Scalar Measurements
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]
* Tractography Label Map Seeding
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]
 
* Tractography Interactive Seeding
 
* Tractography Interactive Seeding
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
* DWIRician LMMSEFilter
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]
* Resample Scalar Vector DWIVolume
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]
* DWIJoint Rician LMMSEFilter
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]
* DWITo DTIEstimation
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]
* Diffusion Weighted Volume Masking
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]
 
=== FiberAnalysis ===
 
=== FiberAnalysis ===
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]
 
=== Tractography ===
 
=== Tractography ===
* Fiber Bundle To Label Map
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]
 
* Fiber Bundle Label Select
 
* Fiber Bundle Label Select
 
== Editor Effects ==
 
== Editor Effects ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]
 
== Endoscopy ==
 
== Endoscopy ==
* Endoscopy
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]
 
== Examples ==
 
== Examples ==
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
 
== Exporter ==
 
== Exporter ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
 
== File ==
 
== File ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]
 
== Filtering ==
 
== Filtering ==
* Extract Skeleton
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]
* Threshold Scalar Volume
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]
* N4ITKBias Field Correction
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]
* Simple Filters
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]
* Image Label Combine
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]
* Voting Binary Hole Filling Image Filter
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]
* Histogram Matching
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]
* Checker Board Filter
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]
 
=== Arithmetic ===
 
=== Arithmetic ===
* Multiply Scalar Volumes
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]
* Add Scalar Volumes
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]
* Cast Scalar Volume
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]
* Subtract Scalar Volumes
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]
* Mask Scalar Volume
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]
 
=== Denoising ===
 
=== Denoising ===
* Gradient Anisotropic Diffusion
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]
* Median Image Filter
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]
* Gaussian Blur Image Filter
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]
* Curvature Anisotropic Diffusion
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]
 
=== Morphology ===
 
=== Morphology ===
* Grayscale Fill Hole Image Filter
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]
* Grayscale Grind Peak Image Filter
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]
 
== IGT ==
 
== IGT ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]
* [http://www.slicerigt.org Volume Reslice Driver]
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]
* [http://www.slicerigt.org Collect Fiducials]
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [http://www.slicerigt.org Create Models]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]
* Open IGTLink IF
+
* [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]
* [http://www.slicerigt.org Path Explorer]
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]
* [http://www.slicerigt.org Ultrasound Snapshots]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]
* [http://www.slicerigt.org Transform Fusion]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]
* [http://www.slicerigt.org Breach Warning]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]
* [http://www.slicerigt.org Fiducial Registration Wizard]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]
* [http://www.slicerigt.org Open IGTLink Remote]
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]
* [http://www.slicerigt.org Plus Remote]
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]
* [https://github.com/gpernelle/iGyne i Gyne]
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]
* [https://github.com/gpernelle/NeedleFinder Needle Finder]
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicerigt.org Fiducials To Model Registration]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]
* [http://www.slicerigt.org Pivot Calibration]
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]
 
== Informatics ==
 
== Informatics ==
* Annotations
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]
* Markups
+
* [[Documentation/4.4/Modules/Markups|Markups]]
* Units
+
* [[Documentation/4.4/Modules/Units|Units]]
* DICOM
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]
* Sample Data
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]
* Subject Hierarchy
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]
* Data
+
* [[Documentation/4.4/Modules/Data|Data]]
* Colors
+
* [[Documentation/4.4/Modules/Colors|Colors]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]
 
== Legacy ==
 
== Legacy ==
 
=== Converters ===
 
=== Converters ===
* BSpline To Deformation Field
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
 
=== Diffusion ===
 
=== Diffusion ===
 
==== Denoising ====
 
==== Denoising ====
* DWIUnbiased Non Local Means Filter
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]
 
==== Diffusion Data Conversion ====
 
==== Diffusion Data Conversion ====
 
* DTIimport
 
* DTIimport
 
* DTIexport
 
* DTIexport
 
=== Filtering ===
 
=== Filtering ===
* Otsu Threshold Image Filter
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]
* Resample Scalar Volume
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]
 
=== Registration ===
 
=== Registration ===
 
* Test Grid Transform Registration
 
* Test Grid Transform Registration
* Expert Automated Registration
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]
 
=== Work in Progress ===
 
=== Work in Progress ===
 
==== Diffusion Tensor ====
 
==== Diffusion Tensor ====
Line 465: Line 465:
 
* Diffusion Tensor Test
 
* Diffusion Tensor Test
 
== Mesh Generation ==
 
== Mesh Generation ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]
 
== MeshGeneration ==
 
== MeshGeneration ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]
 
== Microscopy ==
 
== Microscopy ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]
 
== Multidimensional data ==
 
== Multidimensional data ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]
 
== MultiVolume Support ==
 
== MultiVolume Support ==
* Multi Volume Explorer
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]
* Multi Volume Importer
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]
 
== Perk Tutor ==
 
== Perk Tutor ==
* [http://www.perktutor.org/ Python Metrics Calculator]
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]
* [http://www.perktutor.org/ Workflow Segmentation]
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]
* [http://www.perktutor.org/ Transform Recorder]
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]
* [http://www.perktutor.org/ Perk Evaluator]
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]
 
== Plastimatch ==
 
== Plastimatch ==
* [http://slicerrt.org Dicom Sro Export]
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]
* [http://slicerrt.org Plm Register]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]
 
=== Registration ===
 
=== Registration ===
* [http://slicerrt.org plastimatch slicer bspline]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]
* [http://slicerrt.org plastimatch slicer landwarp]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]
* [http://slicerrt.org plastimatch slicer xformwarp]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]
 
=== Utilities ===
 
=== Utilities ===
* [http://slicerrt.org plastimatch slicer dicomrt export]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]
* [http://slicerrt.org plastimatch slicer dicomrt import]
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]
* [http://slicerrt.org Plastimatch Py]
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]
 
== Quantification ==
 
== Quantification ==
* PETStandard Uptake Value Computation
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]
* Data Probe
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]
 
== Radiotherapy ==
 
== Radiotherapy ==
* [http://slicerrt.org Contour Comparison]
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]
* [http://slicerrt.org Dicom Rt Import]
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]
* [http://slicerrt.org Beams]
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]
* [http://slicerrt.org Dvh Comparison]
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]
* [http://slicerrt.org Isodose]
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]
* [http://slicerrt.org Contours]
+
* [[Documentation/4.4/Modules/Contours|Contours]]
* [http://slicerrt.org Dose Accumulation]
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]
* [http://slicerrt.org Dicom Rt Export]
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]
* [http://slicerrt.org Dose Comparison]
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]
* [http://slicerrt.org Contour Morphology]
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]
* [http://slicerrt.org Planar Image]
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]
* [http://slicerrt.org Dicom Sro Import]
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]
* [http://slicerrt.org Dose Volume Histogram]
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]
 
== Registration ==
 
== Registration ==
* BRAINSResample
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]
* Transforms
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]
 
* BRAINSResize
 
* BRAINSResize
* BRAINSFit
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]
 
* Perform Metric Test
 
* Perform Metric Test
 
=== Specialized ===
 
=== Specialized ===
* ACPCTransform
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]
* Fiducial Registration
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]
 
* VBRAINSDemon Warp
 
* VBRAINSDemon Warp
* BRAINSDemon Warp
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]
* Reformat
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]
 
== Segmentation ==
 
== Segmentation ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* [http://www.nitrc.org/projects/abc ABC]
 
* EMSegment Quick
 
* EMSegment Quick
* Simple Region Growing Segmentation
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]
* EMSegment
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]
 
=== Specialized ===
 
=== Specialized ===
 
* EMSegment Command Line
 
* EMSegment Command Line
* Robust Statistics Segmenter
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]
 
* BRAINSROIAuto
 
* BRAINSROIAuto
 
== Shape Analysis ==
 
== Shape Analysis ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]
 
== Slicelets ==
 
== Slicelets ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]
 
== Surface Models ==
 
== Surface Models ==
* Surface Toolbox
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]
* Model To Label Map
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]
* Merge Models
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]
* Probe Volume With Model
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]
* Grayscale Model Maker
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]
* Label Map Smoothing
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]
* Model Maker
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]
 
== Testing ==
 
== Testing ==
 
* Self Tests
 
* Self Tests
Line 573: Line 573:
 
* CLI4Test
 
* CLI4Test
 
* Threshold Threading Test
 
* Threshold Threading Test
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]
 
* Performance Tests
 
* Performance Tests
 
* Slicer MRBTest
 
* Slicer MRBTest
Line 611: Line 611:
 
* BRAINSDWICleanup
 
* BRAINSDWICleanup
 
== Utilities ==
 
== Utilities ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]
 
* BRAINSStrip Rotation
 
* BRAINSStrip Rotation
 
* EMSegment Transform To New Format
 
* EMSegment Transform To New Format
* Data Store
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]
 
=== BRAINS ===
 
=== BRAINS ===
 
* BRAINSTransform Convert
 
* BRAINSTransform Convert
Line 622: Line 622:
 
* [http://slicer.vmtk.org/ Level Set Segmentation]
 
* [http://slicer.vmtk.org/ Level Set Segmentation]
 
== Wizards ==
 
== Wizards ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]
 
== Work in Progress ==
 
== Work in Progress ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
 
=== Converters ===
 
=== Converters ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]
 
=== Informatics ===
 
=== Informatics ===
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]
 
==== TestCases ====
 
==== TestCases ====
 
* Reporting Self Test
 
* Reporting Self Test
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 
== XNATSlicer ==
 
== XNATSlicer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]
 
= Modules by contributing organization =
 
= Modules by contributing organization =
 
71 contributing organizations:
 
71 contributing organizations:
Line 708: Line 708:
 
* [[#while_at_GE|while at GE]]
 
* [[#while_at_GE|while at GE]]
 
== Asclepios INRIA ==
 
== Asclepios INRIA ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== AZE R&D ==
 
== AZE R&D ==
 
* JRC2013Vis
 
* JRC2013Vis
Line 716: Line 716:
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Brigham and Women's Hospital ==
 
== Brigham and Women's Hospital ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* test tractography display
 
* test tractography display
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== BWH ==
 
== BWH ==
 
* Add Many Markups Fiducial Test
 
* Add Many Markups Fiducial Test
 
* Change Tracker Self Test
 
* Change Tracker Self Test
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
 
* Markups In Views Self Test
 
* Markups In Views Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== BWH, SPL ==
 
== BWH, SPL ==
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
 
== BWH, SUMS ==
 
== BWH, SUMS ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== BWH/UAB ==
 
== BWH/UAB ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== CARMA ==
 
== CARMA ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 754: Line 754:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
 
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China);  Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== CRTC ==
 
== CRTC ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== gatech ==
 
== gatech ==
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
 
== GE ==
 
== GE ==
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
 
== Georgia Tech ==
 
== Georgia Tech ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== IBM ==
 
== IBM ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
 
== Isomics ==
 
== Isomics ==
 
* Atlas Tests
 
* Atlas Tests
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Probe    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* DICOM    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
* Endoscopy    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/Endoscopy|Endoscopy]]   <small>(scripted, built-in)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* Fiber Bundle To Label Map    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]   <small>(scripted, built-in)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
 
* Performance Tests
 
* Performance Tests
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* RSNA2012Prostate Demo
 
* RSNA2012Prostate Demo
 
* RSNAQuant Tutorial
 
* RSNAQuant Tutorial
 
* RSNAVis Tutorial
 
* RSNAVis Tutorial
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* scene Import2428
 
* scene Import2428
 
* Self Tests
 
* Self Tests
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
* slicer Close Crash Bug2590
 
* slicer Close Crash Bug2590
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Vector To Scalar Volume    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Isomics Inc. ==
 
== Isomics Inc. ==
 
* DICOMDiffusion Volume Plugin
 
* DICOMDiffusion Volume Plugin
Line 840: Line 840:
 
* Threshold Threading Test
 
* Threshold Threading Test
 
== Isomics, pieper@isomics.com ==
 
== Isomics, pieper@isomics.com ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Kingston General Hospital ==
 
== Kingston General Hospital ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Kitware ==
 
== Kitware ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Kitware) ==
 
== Kitware) ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== MGH ==
 
== MGH ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== MGH, Boston ==
 
== MGH, Boston ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
 
== Moka Creative, LLC, kumar.sunil.p@gmail.com ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== MSC/NLM ==
 
== MSC/NLM ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
 
== Noware ==
 
== Noware ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
== Orobix ==
 
== Orobix ==
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== PerkLab at Queen's University ==
 
== PerkLab at Queen's University ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 
== PerkLab, Queen's ==
 
== PerkLab, Queen's ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
 
== PerkLab, Queen's University ==
 
== PerkLab, Queen's University ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== PMH ==
 
== PMH ==
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== PMH, Toronto ==
 
== PMH, Toronto ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Princess Margaret Cancer Centre ==
 
== Princess Margaret Cancer Centre ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Queen's ==
 
== Queen's ==
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Rt Import Self Test
 
* Dicom Rt Import Self Test
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* NAMIC Tutorial 2013June Self Test
 
* NAMIC Tutorial 2013June Self Test
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Queen's Universit ==
 
== Queen's Universit ==
* [http://www.slicerigt.org Fiducials To Model Registration]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Queen's University ==
 
== Queen's University ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Create Models]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://www.slicerigt.org Open IGTLink Remote]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicerigt.org Ultrasound Snapshots]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== Queen's University) Jaime Garcia-Guevara (Queen's University ==
 
== Queen's University) Jaime Garcia-Guevara (Queen's University ==
 
* Breach Warning Self Test
 
* Breach Warning Self Test
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
 
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
== RMP, PMH ==
 
== RMP, PMH ==
 
* Dicom Sro Import Plugin
 
* Dicom Sro Import Plugin
 
== SAIC-Frederick, NCI-Frederick ==
 
== SAIC-Frederick, NCI-Frederick ==
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== SBU ==
 
== SBU ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
== SCI Institute ==
 
== SCI Institute ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== Shiga University of Medical Science in Japan ==
 
== Shiga University of Medical Science in Japan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Shiga University of Medical Science, Japan, SPL ==
 
== Shiga University of Medical Science, Japan, SPL ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
== SINAPSE ==
 
== SINAPSE ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
== SNR ==
 
== SNR ==
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== SPL ==
 
== SPL ==
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
* Reporting Self Test
 
* Reporting Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== SPL B&W Harvard ==
 
== SPL B&W Harvard ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== SPL, BWH ==
 
== SPL, BWH ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== SPL, BWH, UPenn ==
 
== SPL, BWH, UPenn ==
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
 
== SUMS ==
 
== SUMS ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Surgical Planning Lab ==
 
== Surgical Planning Lab ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
== UAB ==
 
== UAB ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== UHN, Toronto ==
 
== UHN, Toronto ==
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Uiowa ==
 
== Uiowa ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
Line 1,056: Line 1,056:
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== UNC ==
 
== UNC ==
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
 
== Univ of Michigan ==
 
== Univ of Michigan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Univ. of Iowa ==
 
== Univ. of Iowa ==
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
== University 'Magna Graecia' of Catanzaro ==
 
== University 'Magna Graecia' of Catanzaro ==
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== University College Cork ==
 
== University College Cork ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
== University of Heidelberg ==
 
== University of Heidelberg ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== University of Iowa ==
 
== University of Iowa ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== University of Iowa) and Andrey Fedorov (SPL ==
 
== University of Iowa) and Andrey Fedorov (SPL ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== UPenn ==
 
== UPenn ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
== Utah ==
 
== Utah ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== UVa ==
 
== UVa ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== UWA ==
 
== UWA ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
== WashU-St. Louis, dmarcus@wustl.edu ==
 
== WashU-St. Louis, dmarcus@wustl.edu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== while at GE ==
 
== while at GE ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
= Modules by contributing individual =
 
= Modules by contributing individual =
 
185 contributing individuals:
 
185 contributing individuals:
Line 1,289: Line 1,289:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Akila Viswanathan ==
 
== Akila Viswanathan ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Alan Morris ==
 
== Alan Morris ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,302: Line 1,302:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Alex Yarmakovich ==
 
== Alex Yarmakovich ==
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
== Alex Yarmarkovich ==
 
== Alex Yarmarkovich ==
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* Image Label Combine    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ImageLabelCombine|Image Label Combine]]   <small>(cli, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Ali Ghayoor ==
 
== Ali Ghayoor ==
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
* Perform Metric Test    <small>(cli, built-in)</small>
 
== Alireza Mehrtash ==
 
== Alireza Mehrtash ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
== Allen Tannenbaum ==
 
== Allen Tannenbaum ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== Amelie Meyer ==
 
== Amelie Meyer ==
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Analysis Laboratory ==
 
== Analysis Laboratory ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Andinet Enquobahrie ==
 
== Andinet Enquobahrie ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
== Andras Lasso ==
 
== Andras Lasso ==
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small>
+
* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== Andreas Freudling ==
 
== Andreas Freudling ==
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== Andrey Fedorov ==
 
== Andrey Fedorov ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* BSpline To Deformation Field    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* Change Tracker Self Test
 
* Change Tracker Self Test
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* DICOMSegmentation Plugin
 
* DICOMSegmentation Plugin
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
* Multi Volume Importer Plugin
 
* Multi Volume Importer Plugin
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
 
* Reporting Self Test
 
* Reporting Self Test
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small>
+
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small>
+
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
== Andriy Kot ==
 
== Andriy Kot ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Anonymous ==
 
== Anonymous ==
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
== Antonio Damato ==
 
== Antonio Damato ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Antonio Tristan Vega ==
 
== Antonio Tristan Vega ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== Anuja Sharma ==
 
== Anuja Sharma ==
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Arie Nakhmani ==
 
== Arie Nakhmani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
== Atsushi Yamada ==
 
== Atsushi Yamada ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== Beatriz Paniagua from Department of Orthodontics ==
 
== Beatriz Paniagua from Department of Orthodontics ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== Benjamin Long ==
 
== Benjamin Long ==
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
 
== Benjamin Yvernault ==
 
== Benjamin Yvernault ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Bill Lorensen ==
 
== Bill Lorensen ==
* Add Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* Checker Board Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* Create DICOMSeries    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* Curvature Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
* Gradient Anisotropic Diffusion    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* Grayscale Fill Hole Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Grind Peak Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]   <small>(cli, built-in)</small>
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Histogram Matching    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]   <small>(cli, built-in)</small>
* Median Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Multiply Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]   <small>(cli, built-in)</small>
* Orient Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]   <small>(cli, built-in)</small>
* Otsu Threshold Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]   <small>(cli, built-in)</small>
* Resample Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVolume|Resample Scalar Volume]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Subtract Scalar Volumes    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small>
+
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
* Voting Binary Hole Filling Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]   <small>(cli, built-in)</small>
 
== Brad Davis ==
 
== Brad Davis ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Bradley Lowekamp ==
 
== Bradley Lowekamp ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small>
+
* [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 
== Brian Zenger ==
 
== Brian Zenger ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,453: Line 1,453:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Carl-Fredrik Westin ==
 
== Carl-Fredrik Westin ==
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez ==
 
== Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
== Casey B Goodlett ==
 
== Casey B Goodlett ==
* Expert Automated Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]   <small>(cli, built-in)</small>
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 
== Charles Marion ==
 
== Charles Marion ==
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
 
== Christian Baumgartner ==
 
== Christian Baumgartner ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Csaba Pinter ==
 
== Csaba Pinter ==
* [http://slicerrt.org Beams]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Rt Import Self Test
 
* Dicom Rt Import Self Test
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* NAMIC Tutorial 2013June Self Test
 
* NAMIC Tutorial 2013June Self Test
* [http://slicerrt.org Planar Image]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* Subject Hierarchy    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]   <small>(loadable, built-in)</small>
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Core Plugins Self Test
 
* Subject Hierarchy Generic Self Test
 
* Subject Hierarchy Generic Self Test
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Dan Marcus ==
 
== Dan Marcus ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small>
+
* [[Documentation/4.4/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
== Daniel Blezek ==
 
== Daniel Blezek ==
* Execution Model Tour    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]   <small>(cli, built-in)</small>
 
== Daniel Haehn ==
 
== Daniel Haehn ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Danny Perry ==
 
== Danny Perry ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Demian Wassermann ==
 
== Demian Wassermann ==
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* Diffusion Weighted Volume Masking    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* test tractography display
 
* test tractography display
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
 
== Dinggang Shen ==
 
== Dinggang Shen ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== Dirk Padfield ==
 
== Dirk Padfield ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
 
== Dominik Meier ==
 
== Dominik Meier ==
* Fiducial Registration    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
 
== e ==
 
== e ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,524: Line 1,524:
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Ethan Ulrich ==
 
== Ethan Ulrich ==
* DICOMPETSUVPlugin
+
* [[Documentation/4.4/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
* DICOMRWVMPlugin
+
* [[Documentation/4.4/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== Eugene Kholmovski ==
 
== Eugene Kholmovski ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== ez ==
 
== ez ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== Fotis Drakopoulos ==
 
== Fotis Drakopoulos ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Francois Budin ==
 
== Francois Budin ==
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* Resample DTIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]   <small>(cli, built-in)</small>
* Resample Scalar Vector DWIVolume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]   <small>(cli, built-in)</small>
 
== Franklin King ==
 
== Franklin King ==
* [http://www.slicerigt.org Collect Fiducials]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Pivot Calibration]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Plus Remote]    <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement]    <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small>
+
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
* [http://www.slicerigt.org Transform Fusion]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
 
== Greg Gardner ==
 
== Greg Gardner ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Greg Harris ==
 
== Greg Harris ==
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
== Greg Sharp ==
 
== Greg Sharp ==
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Gregory Sharp ==
 
== Gregory Sharp ==
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Plm Register]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Guido Gerig ==
 
== Guido Gerig ==
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
== Guillaume Pernelle ==
 
== Guillaume Pernelle ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Hans J. Johnson ==
 
== Hans J. Johnson ==
* BRAINSDemon Warp    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 
== Hans Johnson ==
 
== Hans Johnson ==
* BRAINSResample    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== hans-johnson -at- uiowa.edu ==
 
== hans-johnson -at- uiowa.edu ==
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
== http://www.psychiatry.uiowa.edu ==
 
== http://www.psychiatry.uiowa.edu ==
* BRAINSFit    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
== i ==
 
== i ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Ipek Oguz ==
 
== Ipek Oguz ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small>
+
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Ivan Kolesov ==
 
== Ivan Kolesov ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== Jan Egger ==
 
== Jan Egger ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== Jayender Jagadeesan ==
 
== Jayender Jagadeesan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== Jean-Baptiste Berger ==
 
== Jean-Baptiste Berger ==
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
== Jean-Christophe Fillion-Robin ==
 
== Jean-Christophe Fillion-Robin ==
 
* CLI4Test
 
* CLI4Test
* Data Store    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* fiber visibility crash2438
 
* fiber visibility crash2438
 
* label Toggle Bug2049
 
* label Toggle Bug2049
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* Sample Data    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SampleData|Sample Data]]   <small>(scripted, built-in)</small>
* Simple Filters    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Welcome    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Welcome|Welcome]]   <small>(loadable, built-in)</small>
 
== Jennifer Andrea ==
 
== Jennifer Andrea ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
* [http://slicerrt.org Vff File Reader]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Jessica Forbes ==
 
== Jessica Forbes ==
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
== Jim Miller ==
 
== Jim Miller ==
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
* Simple Region Growing Segmentation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]   <small>(cli, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
 
* View Controllers Slice Interpolation Bug1926
 
* View Controllers Slice Interpolation Bug1926
 
== Johan Andruejol ==
 
== Johan Andruejol ==
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
 
== John Evans ==
 
== John Evans ==
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling]    <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small>
+
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 
== Jonathan Bronson ==
 
== Jonathan Bronson ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small>
+
* [[Documentation/4.4/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
== Josh Cates ==
 
== Josh Cates ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,659: Line 1,659:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Joy Matsui ==
 
== Joy Matsui ==
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== Julien Finet ==
 
== Julien Finet ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
 
* Double Arrays    <small>(loadable, built-in)</small>
* Event Broker
+
* [[Documentation/4.4/Modules/EventBroker|Event Broker]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
 
* Scene Performance    <small>(scripted, built-in)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* Tractography Display    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
* Transforms    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Transforms|Transforms]]   <small>(loadable, built-in)</small>
* Units    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Units|Units]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Julien Jomier ==
 
== Julien Jomier ==
* Gaussian Blur Image Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]   <small>(cli, built-in)</small>
 
== Junichi Tokuda ==
 
== Junichi Tokuda ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small>
+
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [http://www.slicerigt.org Volume Reslice Driver]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
== K ==
 
== K ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,698: Line 1,698:
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Kent WIlliams ==
 
== Kent WIlliams ==
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
 
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
Line 1,707: Line 1,707:
 
== Kevin Wang ==
 
== Kevin Wang ==
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* [http://slicerrt.org Contour Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contour Morphology]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Contours]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Export]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Rt Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomRtImport|Dicom Rt Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Export]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dicom Sro Import]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* Dicom Sro Import Plugin
 
* Dicom Sro Import Plugin
* [http://slicerrt.org Dose Accumulation]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Comparison]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Dose Volume Histogram]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org Isodose]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small>
+
* [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== Kilian Pohl ==
 
== Kilian Pohl ==
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* EMSegment    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/EMSegment|EMSegment]]   <small>(loadable, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
 
== Koichiro Murakami ==
 
== Koichiro Murakami ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
 
== Kyle Sunderl ==
 
== Kyle Sunderl ==
* [http://slicerrt.org Dvh Comparison]    <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== l ==
 
== l ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Lauren Barber ==
 
== Lauren Barber ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Lauren O'Donnell ==
 
== Lauren O'Donnell ==
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* Probe Volume With Model    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]   <small>(cli, built-in)</small>
 
== Laurent Chauvin ==
 
== Laurent Chauvin ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small>
+
* [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [http://www.slicerigt.org Path Explorer]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small>
+
* [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 
== Liang-Jia Zhu ==
 
== Liang-Jia Zhu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Liangjia Zhu ==
 
== Liangjia Zhu ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
== Luca Antiga ==
 
== Luca Antiga ==
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
== Luis G. Torres ==
 
== Luis G. Torres ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small>
+
* [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
 
== Luping Fang ==
 
== Luping Fang ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== m ==
 
== m ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Marc Niethammer ==
 
== Marc Niethammer ==
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
 
== Marcel Prastawa prastawa@sci.utah.edu ==
 
== Marcel Prastawa prastawa@sci.utah.edu ==
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
Line 1,770: Line 1,770:
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
== Markus Van Tol ==
 
== Markus Van Tol ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 
== Martin Styner ==
 
== Martin Styner ==
* [http://www.nitrc.org/projects/ukftractography/ Convert VTK]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
* [http://www.nitrc.org/projects/dti_tract_stat dtitractstat]    <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small>
+
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Mason Winsauer ==
 
== Mason Winsauer ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Matt Lougheed ==
 
== Matt Lougheed ==
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small>
+
* [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small>
+
* [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
== Mattea Welch ==
 
== Mattea Welch ==
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 
== Matthew Holden ==
 
== Matthew Holden ==
* [http://www.slicerigt.org Breach Warning]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicerigt.org Fiducial Registration Wizard]    <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.perktutor.org/ Python Metrics Calculator]    <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small>
+
* [[Documentation/4.4/Extensions/MultidimData|Sequences]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
 
== Matthew S. Holden ==
 
== Matthew S. Holden ==
* [http://www.perktutor.org/ Perk Evaluator]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Transform Recorder]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
* [http://www.perktutor.org/ Workflow Segmentation]    <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small>
+
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
== Matthew Woehlke ==
 
== Matthew Woehlke ==
* Extension Wizard    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]   <small>(scripted, built-in)</small>
 
== Michael Jeulin-Lagarrigue ==
 
== Michael Jeulin-Lagarrigue ==
* Reformat    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Reformat|Reformat]]   <small>(loadable, built-in)</small>
 
== Minjeong Kim ==
 
== Minjeong Kim ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training]    <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] extension)</small>
+
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
 
== Nabgha Fahrat ==
 
== Nabgha Fahrat ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Neuro Image Resarch ==
 
== Neuro Image Resarch ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Extraction]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small>
+
* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 
== Nicholas Herlambang ==
 
== Nicholas Herlambang ==
 
* JRC2013Vis
 
* JRC2013Vis
 
== Nick Tustison ==
 
== Nick Tustison ==
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
 
== Nicole Aucoin ==
 
== Nicole Aucoin ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
 
* Add Many Markups Fiducial Test
 
* Add Many Markups Fiducial Test
* Annotations    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* Colors    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
 
* Colors Scalar Bar Self Test
 
* Colors Scalar Bar Self Test
* Data    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Data|Data]]   <small>(loadable, built-in)</small>
 
* Fiducial Layout Switch Bug1914
 
* Fiducial Layout Switch Bug1914
* Grayscale Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]   <small>(cli, built-in)</small>
* Markups    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Markups|Markups]]   <small>(loadable, built-in)</small>
 
* Markups In Compare Viewers Self Test
 
* Markups In Compare Viewers Self Test
 
* Markups In Views Self Test
 
* Markups In Views Self Test
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Models    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Models|Models]]   <small>(loadable, built-in)</small>
* Model To Label Map    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]   <small>(cli, built-in)</small>
 
* Neurosurgical Planning Tutorial Markups Self Test
 
* Neurosurgical Planning Tutorial Markups Self Test
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small>
+
* [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
* Scene Views    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/SceneViews|Scene Views]]   <small>(loadable, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
* Volumes    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Volumes|Volumes]]   <small>(loadable, built-in)</small>
 
== Nigel Goh ==
 
== Nigel Goh ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small>
+
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
== Nikos Chrisochoides ==
 
== Nikos Chrisochoides ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small>
+
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== Olivier Clatz ==
 
== Olivier Clatz ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small>
+
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
 
== p ==
 
== p ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Paolo Zaffino ==
 
== Paolo Zaffino ==
* [http://slicerrt.org Plastimatch Py]    <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Pat Marion ==
 
== Pat Marion ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small>
+
* [[Documentation/4.4/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
== Paul Mercea ==
 
== Paul Mercea ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
== Pengdong Xiao ==
 
== Pengdong Xiao ==
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter]    <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small>
+
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
== Peter Black ==
 
== Peter Black ==
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
== Peter Karasev ==
 
== Peter Karasev ==
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 
== Peter Savadjiev ==
 
== Peter Savadjiev ==
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small>
+
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://www.nitrc.org/projects/ukftractography/ UKFTractography]    <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small>
+
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
== Pierre Seroul ==
 
== Pierre Seroul ==
* Extract Skeleton    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]   <small>(cli, built-in)</small>
 
== Pietro Nardelli ==
 
== Pietro Nardelli ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
== Please direct questions or suggestions to http://groups.google.com/group/plastimatch ==
 
== Please direct questions or suggestions to http://groups.google.com/group/plastimatch ==
* [http://slicerrt.org plastimatch slicer bspline]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt export]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt export]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer dicomrt import]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer dicomrt import]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer landwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [http://slicerrt.org plastimatch slicer xformwarp]    <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small>
+
* [[Documentation/4.4/Extensions/SlicerRT|plastimatch slicer xformwarp]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
== Polina Goll ==
 
== Polina Goll ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Qing Pan ==
 
== Qing Pan ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== R ==
 
== R ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
Line 1,896: Line 1,896:
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
 
== Raul San Jose ==
 
== Raul San Jose ==
* Diffusion Tensor Scalar Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
* DWITo DTIEstimation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]   <small>(cli, built-in)</small>
* Tractography Label Map Seeding    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]   <small>(cli, built-in)</small>
 
== Rob MacLeod ==
 
== Rob MacLeod ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,910: Line 1,910:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small>
+
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+
* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 
== Ron Kikinis ==
 
== Ron Kikinis ==
* ACPCTransform    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* Cast Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]   <small>(cli, built-in)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small>
+
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* Crop Volume    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]   <small>(loadable, built-in)</small>
* Mask Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]   <small>(cli, built-in)</small>
* Merge Models    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/MergeModels|Merge Models]]   <small>(cli, built-in)</small>
* Model Maker    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]]   <small>(cli, built-in)</small>
* Multi Volume Explorer    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]   <small>(loadable, built-in)</small>
* Multi Volume Importer    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/MultiVolumeImporter|Multi Volume Importer]]   <small>(scripted, built-in)</small>
* N4ITKBias Field Correction    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
* PETStandard Uptake Value Computation    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]   <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small>
+
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
* Robust Statistics Segmenter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]   <small>(cli, built-in)</small>
* Surface Toolbox    <small>(scripted, built-in)</small>
+
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]   <small>(scripted, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
* Threshold Scalar Volume    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]   <small>(cli, built-in)</small>
* View Controllers    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/ViewControllers|View Controllers]]   <small>(loadable, built-in)</small>
* Volume Rendering    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/VolumeRendering|Volume Rendering]]   <small>(loadable, built-in)</small>
 
== Ross Whitaker ==
 
== Ross Whitaker ==
* Label Map Smoothing    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]   <small>(cli, built-in)</small>
 
== Ruifeng Chen ==
 
== Ruifeng Chen ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small>
+
* [[Documentation/4.4/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/GyroGuide|Gyro Guide]] extension)</small>
 
== S ==
 
== S ==
 
* Dicom Rt Import Plugin
 
* Dicom Rt Import Plugin
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
* [https://github.com/gpernelle/NeedleFinder Needle Finder]    <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small>
+
* [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 
== Salma Bengali ==
 
== Salma Bengali ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
Line 1,950: Line 1,950:
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
== Sam Song ==
 
== Sam Song ==
* [https://github.com/gpernelle/iGyne i Gyne]    <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small>
+
* [[Documentation/4.4/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/iGyne|i Gyne]] extension)</small>
 
== Santiago Aja Fern ==
 
== Santiago Aja Fern ==
* DWIJoint Rician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIRician LMMSEFilter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
* DWIUnbiased Non Local Means Filter    <small>(cli, built-in)</small>
+
* [[Documentation/4.4/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]   <small>(cli, built-in)</small>
 
== Sebastien Barr&eacute; ==
 
== Sebastien Barr&eacute; ==
* Cameras    <small>(loadable, built-in)</small>
+
* [[Documentation/4.4/Modules/Cameras|Cameras]]   <small>(loadable, built-in)</small>
 
== Sebastien Barre ==
 
== Sebastien Barre ==
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
== Shigeyuki Naka ==
 
== Shigeyuki Naka ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Soichiro Tani ==
 
== Soichiro Tani ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small>
+
* [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
== Sonia Pujol ==
 
== Sonia Pujol ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small>
+
* [[Documentation/4.4/