Difference between revisions of "Documentation/4.3/Extensions/XNATSlicer"

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<br><br><b>The only step needed is to make sure you have Read+Write permissions for your Slicer install directory.  (If you already do, you can proceed to the [[#First Login|First Login]] section.)</b><br><br><br>
 
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File:XNATSlicer-Perms1.jpg|1. Navigate to the directory where Slicer is installed (or the master-build directory if you are using the compiled version)
 
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File:XNATSlicer-Perms2.jpg|2. Right click on the Slicer install folder and go to "Properties."
 
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File:XNATSlicer-Perms3-4.jpg|3. Go to the "Security" Tab. Click on "Users" (or the equivalent group) under the "Groups or user names:" category.  Then click the "edit button".  A "Permissions" window will pop up.  In the "Permissions" window, select "Users" again and make sure "Allow" is checked for all options. Hit "OK."
 
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File:XNATSlicer-Perms5.jpg|4. You should now see that Users have Read+Write access for the Slicer install folder.
 
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You're all set.  Just load up the XNATSlicer module and click the "Login" button, and the module will install the additional libraries for you.  If you need a walkthrough, look [[#First Login|below]].<br>
 
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File:XNATSlicer-LibInstall1.jpg|1. During your first login, the XNATSlicer module will install it's external libraries for you.  Just click the "Login" button.
 
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File:XNATSlicer-LibInstall2.jpg|2. You'll be notified that the module will install external libraries.  Hit "OK."
 
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File:XNATSlicer-LibInstall3.jpg|3. You'll be warned that you need full [[#Install Instructions|Read+Write]] access to your Slicer install directory.  Assuming you followed the [[#Install Instructions|instructions above]], hit "OK."
 
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File:XNATSlicer-LibInstall4.jpg|4. A popup will appear telling you what libraries are being installed.
 
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File:XNATSlicer-LibInstall5.jpg|5. You'll be asked to restart Slicer.  Afterwards, just log in to your XNAT host of choice and you're all set.  See the [[#Panels and their use|"Panels and their use"]] section.
 
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Source code: https://github.com/sunilk-wustl/XNATSlicer
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Source code: https://github.com/skumar221/XNATSlicer
  
 
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Revision as of 16:38, 8 November 2013

Home < Documentation < 4.3 < Extensions < XNATSlicer


For the latest Slicer documentation, visit the read-the-docs.



Introduction and Acknowledgements

XNATSlicer-Med.png
Extension: XNATSlicer
Acknowledgments: TBD
Author: Sunil Kumar (Moka Creative, LLC / Washington University in St. Louis)
Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper (SPL)
Contact: Sunil Kumar, <email>sunilk@mokacreativellc.com</email>

National Alliance for Medical Image Computing (NA-MIC)  
The Neuroinformatics Research Group - WUSTL  

Module Description

Secure GUI-based IO with any XNAT server. For Slicer 4.3+


Features:

  • Download and view
    • Scans (individual or batch)
    • Bundled Slicer scenes (*.mrb)
    • Any Slicer-readable file
    • Customize visible XNAT metadata.
  • Upload
    • Bundled Slicer scenes (*.mrb)
  • Other
    • Project and folder creation
    • File deletion


Use Cases

Coming Soon!

Tutorials

Panels and their use

XNATSlicer
  • Secure login
  • Status updater
  • Project and file browser
    • Traverse via tree
    • Download/view
    • Upload
    • Create projects and folders
    • Delete folders and files

Similar Modules

References

Information for Developers

Work in progress
 Section under construction.


Source code: https://github.com/skumar221/XNATSlicer

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