Difference between revisions of "Documentation/4.3/Extensions/OpenCAD"

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*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]]
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*HeterogeneityCAD (under development)
  
 
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*The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
 
*The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
 
*The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
 
*The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
 
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{{documentation/{{documentation/version}}/extension-section|Modules}}
 
*[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]]
 
*HeterogeneityCAD
 
  
 
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*SegmentCAD
 
*SegmentCAD
 
**[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
 
**[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
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*HeterogeneityCAD
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**Under Development
  
 
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{{documentation/{{documentation/version}}/module-section|Data sets}}
 
{{documentation/{{documentation/version}}/module-section|Data sets}}
 
*SegmentCAD
 
*SegmentCAD
**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the {{documentation/modulename}} tutorial)]]‎  
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**[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the SegmentCAD tutorial)]]‎  
 
**[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]]‎
 
**[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]]‎
 
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*HeterogeneityCAD
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**Under Development
 
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{{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}}
 
{{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}}
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**Select the fourth post-contrast volume
 
**Select the fourth post-contrast volume
 
**Create or select a label map volume node to represent the output of the segmentation
 
**Create or select a label map volume node to represent the output of the segmentation
**Click "Apply OpenCAD Segmentation"
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**Click "Apply SegmentCAD Segmentation"
 
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*HeterogeneityCAD
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**Under Development
 
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{{documentation/{{documentation/version}}/module-section|Similar Modules}}
 
{{documentation/{{documentation/version}}/module-section|Similar Modules}}

Revision as of 03:57, 30 April 2014

Home < Documentation < 4.3 < Extensions < OpenCAD

For the latest Slicer documentation, visit the 4.10 page.

OpenCAD.PNG

Introduction and Acknowledgements

This work is supported by NA-MIC, NCIGT, and the Slicer Community.
Author: Vivek Narayan, Jayender Jagadeesan
Contact: Jayender Jagadeesan <email> jayender@bwh.harvard.edu</email>

NA-MIC  
NCIGT  
SPL  

This project is supported by P41 RR019703/RR/NCRR NIH HHS/United States, P01 CA067165/CA/NCI NIH HHS/United States and P41 EB015898/EB/NIBIB NIH HHS/United States

Modules

Extension Description

  • The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. OpenCAD uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
  • The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.


Tutorials

Data sets

Quick Instructions for Use

  • SegmentCAD (Click on link for greater details)
    • Select the pre-contrast volume
    • Select the first post-contrast volume
    • Select the second post-contrast volume
    • Select the third post-contrast volume
    • Select the fourth post-contrast volume
    • Create or select a label map volume node to represent the output of the segmentation
    • Click "Apply SegmentCAD Segmentation"
  • HeterogeneityCAD
    • Under Development

Similar Modules

N/A

References

N/A

Information for Developers

Source code: https://github.com/vnarayan13/Slicer-OpenCAD