Difference between revisions of "Documentation/4.2/SlicerApplication/LookupTables/TractographyColors"

From Slicer Wiki
Jump to: navigation, search
(Nightly -> 4.2)
 
(Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887)
 
(9 intermediate revisions by one other user not shown)
Line 1: Line 1:
 +
<noinclude>{{documentation/versioncheck}}</noinclude>
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/TractographyColors}}
 
{{documentation/{{documentation/version}}/TractographyColors}}
Line 16: Line 17:
  
 
This is the look-up table for the parcellation of the white matter of the brain.
 
This is the look-up table for the parcellation of the white matter of the brain.
−
*Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab
+
*Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab, Nikos Makris
  
  
Line 28: Line 29:
 
|-
 
|-
 
|0
 
|0
 +
|
 +
|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
 
|background
 
|background
−
|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
 
−
|
 
 
|-
 
|-
 
|1
 
|1
 +
|corpus callosum
 +
|style="background:rgb(255, 215, 0)"|rgb(255, 215, 0)
 
|CC
 
|CC
−
|style="background:rgb(255, 215, 0)"|rgb(255, 215, 0)
 
−
|corpus callosum
 
 
|-
 
|-
 
|2
 
|2
 +
|genu of the corpus callosum
 +
|style="background:rgb(225, 215, 0)"|rgb(225, 215, 0)
 
|CC genu
 
|CC genu
−
|style="background:rgb(225, 215, 0)"|rgb(225, 215, 0)
 
−
|genu of the corpus callosum
 
 
|-
 
|-
 
|3
 
|3
 +
|body of the corpus callosum
 +
|style="background:rgb(195, 215, 0)"|rgb(195, 215, 0)
 
|CC body
 
|CC body
−
|style="background:rgb(195, 215, 0)"|rgb(195, 215, 0)
 
−
|body of the corpus callosum
 
 
|-
 
|-
 
|4
 
|4
 +
|splenium of the corpus callosum
 +
|style="background:rgb(165, 215, 0)"|rgb(165, 215, 0)
 
|CC splenium
 
|CC splenium
−
|style="background:rgb(165, 215, 0)"|rgb(165, 215, 0)
 
−
|splenium of the corpus callosum
 
 
|-
 
|-
 
|5
 
|5
−
|DHC
+
|dorsal hippocampal comissure
 
|style="background:rgb(122, 150, 170)"|rgb(122, 120, 170)
 
|style="background:rgb(122, 150, 170)"|rgb(122, 120, 170)
−
|dorsal hippocampal comissure
+
|DHC
 
|-
 
|-
 
|6
 
|6
−
|AnC
+
|anterior comissure
 
|style="background:rgb(92, 140, 170)"|rgb(92, 140, 170)
 
|style="background:rgb(92, 140, 170)"|rgb(92, 140, 170)
−
|anterior comissure
+
|AC
 
|-
 
|-
 
|7
 
|7
 +
|posterior comissure
 +
|style="background:rgb(62, 160, 170)"|rgb(62, 160, 170)
 
|PC
 
|PC
−
|style="background:rgb(62, 160, 170)"|rgb(62, 160, 170)
 
−
|posterior comissure
 
 
|-
 
|-
 
|8
 
|8
 +
|forniceal comissure
 +
|style="background:rgb( 32, 180, 170)"|rgb( 32, 180, 170)
 
|FC
 
|FC
−
|style="background:rgb( 32, 180, 170)"|rgb( 32, 180, 170)
 
−
|forniceal comissure
 
 
|-
 
|-
 
|9
 
|9
 +
|pontine tract
 +
|style="background:rgb(92, 161, 124)"|rgb(92, 161, 124)
 
|PT
 
|PT
−
|style="background:rgb(92, 161, 124)"|rgb(92, 161, 124)
 
−
|pontine tract
 
 
|-
 
|-
 
|10
 
|10
 +
|short cortico-cortical pathway
 +
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 
|U
 
|U
−
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 
−
|short cortico-cortical pathway
 
 
|-
 
|-
 
|11
 
|11
−
|r AC
+
|right arcuate fascicle
 
|style="background:rgb(221,130,101)"|rgb(221,130,101)
 
|style="background:rgb(221,130,101)"|rgb(221,130,101)
−
|right arcuate fasciculus
+
|r AF
 
|-
 
|-
 
|12
 
|12
−
|l AC
+
|left arcuate fascicle
 
|style="background:rgb(216,101,79)"|rgb(216,101,79)
 
|style="background:rgb(216,101,79)"|rgb(216,101,79)
−
|left arcuate fasciculus
+
|l AF
 
|-
 
|-
 
|13
 
|13
 +
|right inferior occipito-frontal fascicle
 +
|style="background:rgb(144,238,144)"|rgb(144,238,144)
 
|r IOFF
 
|r IOFF
−
|style="background:rgb(144,238,144)"|rgb(144,238,144)
 
−
|right inferior occipito-frontal fasciculus
 
 
|-
 
|-
 
|14
 
|14
 +
|left inferior occipito-frontal fascicle
 +
|style="background:rgb( 60, 179, 113)"|rgb( 60, 179, 113)
 
|l IOFF
 
|l IOFF
−
|style="background:rgb( 60, 179, 113)"|rgb( 60, 179, 113)
 
−
|left inferior occipito-frontal fasciculus
 
 
|-
 
|-
 
|15
 
|15
 +
|right inferior longitudinal fascicle
 +
|style="background:rgb(220,245,20)"|rgb(220,245,20)
 
|r ILF
 
|r ILF
−
|style="background:rgb(220,245,20)"|rgb(220,245,20)
 
−
|right inferior longitudinal fasciculus
 
 
|-
 
|-
 
|16
 
|16
 +
|left inferior longitudinal fascicle
 +
|style="background:rgb(176, 176, 8)"|rgb(176, 176, 8)
 
|l ILF
 
|l ILF
−
|style="background:rgb(176, 176, 8)"|rgb(176, 176, 8)
 
−
|left inferior longitudinal fasciculus
 
 
|-
 
|-
 
|17
 
|17
−
|r UNC
+
|right uncinate fascicle
 
|style="background:rgb(255,250,220)"|rgb(255,250,220)
 
|style="background:rgb(255,250,220)"|rgb(255,250,220)
−
|right uncinate fasciculus
+
|r UF
 
|-
 
|-
 
|18
 
|18
−
|l UNC
+
|left uncinate fascicle
 
|style="background:rgb(230,220,70)"|rgb(230,220,70)
 
|style="background:rgb(230,220,70)"|rgb(230,220,70)
−
|left uncinate fasciculus
+
|l UF
 
|-
 
|-
 
|19
 
|19
 +
|right cortico-spinal tract
 +
|style="background:rgb(230, 230, 250)"|rgb(230, 230, 250)
 
|r CST
 
|r CST
−
|style="background:rgb(230, 230, 250)"|rgb(230, 230, 250)
 
−
|right cortico-spinal tract
 
 
|-
 
|-
 
|20
 
|20
 +
|left cortico-spinal tract
 +
|style="background:rgb(200,200,235)"|rgb(200,200,235)
 
|l CST
 
|l CST
−
|style="background:rgb(200,200,235)"|rgb(200,200,235)
 
−
|left cortico-spinal tract
 
 
|-
 
|-
 
|21
 
|21
 +
|right optic radiation
 +
|style="background:rgb(135, 206, 235)"|rgb(135, 206, 235)
 
|r OR
 
|r OR
−
|style="background:rgb(135, 206, 235)"|rgb(135, 206, 235)
 
−
|right optic radiation
 
 
|-
 
|-
 
|22
 
|22
 +
|left optic radiation
 +
|style="background:rgb(0,151,206)"|rgb(0,151,206)
 
|l OR
 
|l OR
−
|style="background:rgb(0,151,206)"|rgb(0,151,206)
 
−
|left optic radiation
 
 
|-
 
|-
 
|23
 
|23
 +
|right cingulum bundle
 +
|style="background:rgb(255, 99, 71)"|rgb(255, 99, 71)
 
|r CB
 
|r CB
−
|style="background:rgb(255, 99, 71)"|rgb(255, 99, 71)
 
−
|right cingulate bundle
 
 
|-
 
|-
 
|24
 
|24
 +
|left cingulum bundle
 +
|style="background:rgb(250, 90, 90)"|rgb(250, 90, 90)
 
|l CB
 
|l CB
−
|style="background:rgb(250, 90, 90)"|rgb(250, 90, 90)
 
−
|left cingulate bundle
 
 
|-
 
|-
 
|25
 
|25
−
|r SLF 1
+
|right superior longitudinal fascicle I
 
|style="background:rgb(183,214,211)"|rgb(183,214,211)
 
|style="background:rgb(183,214,211)"|rgb(183,214,211)
−
|right superior longitudinal fasciculus 1
+
|r SLF I
 
|-
 
|-
 
|26
 
|26
−
|l SLF 1
+
|left superior longitudinal fascicle I
 
|style="background:rgb(152,189,207)"|rgb(152,189,207)
 
|style="background:rgb(152,189,207)"|rgb(152,189,207)
−
|left superior longitudinal fasciculus 1
+
|l SLF I
 
|-
 
|-
 
|27
 
|27
−
|r SLF 2
+
|right superior longitudinal fascicle II
 
|style="background:rgb(178,212,242)"|rgb(178,212,242)
 
|style="background:rgb(178,212,242)"|rgb(178,212,242)
−
|right superior longitudinal fasciculus 2
+
|r SLF II
 
|-
 
|-
 
|28
 
|28
−
|l SLF 2
+
|left superior longitudinal fascicle II
 
|style="background:rgb(111,184,210)"|rgb(111,184,210)
 
|style="background:rgb(111,184,210)"|rgb(111,184,210)
−
|left superior longitudinal fasciculus 2
+
|l SLF II
 
|-
 
|-
 
|29
 
|29
−
|r SLF 3
+
|right superior longitudinal fascicle III
 
|style="background:rgb(111,197,131)"|rgb(111,197,131)
 
|style="background:rgb(111,197,131)"|rgb(111,197,131)
−
|right superior longitudinal fasciculus 3
+
|r SLF III
 
|-
 
|-
 
|30
 
|30
−
|l SLF 3
+
|left superior longitudinal fascicle III
 
|style="background:rgb(68,172,100)"|rgb(68,172,100)
 
|style="background:rgb(68,172,100)"|rgb(68,172,100)
−
|left superior longitudinal fasciculus 3
+
|l SLF III
 
|-
 
|-
 
|31
 
|31
−
|r MDLF
+
|right middle longitudinal fascicle
 
|style="background:rgb(85,188,255)"|rgb(85,188,255)
 
|style="background:rgb(85,188,255)"|rgb(85,188,255)
−
|right  middle longitudinal fasciculus
+
|r MdLF
 
|-
 
|-
 
|32
 
|32
−
|l MDLF
+
|left middle longitudinal fascicle
 
|style="background:rgb( 65, 105, 225)"|rgb( 65, 105, 225)
 
|style="background:rgb( 65, 105, 225)"|rgb( 65, 105, 225)
−
|left  middle longitudinal fasciculus
+
|l MdLF
 
|-
 
|-
 
|33
 
|33
−
|r EC
+
|right extreme capsule
 
|style="background:rgb(196, 110, 0)"|rgb(196, 110, 0)
 
|style="background:rgb(196, 110, 0)"|rgb(196, 110, 0)
−
|right extreme capsule
+
|r EmC
 
|-
 
|-
 
|34
 
|34
−
|l EC
+
|left extreme capsule
 
|style="background:rgb(176, 90, 50)"|rgb(160, 82, 45)
 
|style="background:rgb(176, 90, 50)"|rgb(160, 82, 45)
−
|left extreme capsule
+
|l EmC
 
|-
 
|-
 
|35
 
|35
 +
|right superior occipito-frontal fascicle
 +
|style="background:rgb(216,191,216)"|rgb(216,191,216)
 
|r SOFF
 
|r SOFF
−
|style="background:rgb(216,191,216)"|rgb(216,191,216)
 
−
|right superior occipito-frontal fasciculus
 
 
|-
 
|-
 
|36
 
|36
 +
|left superior occipito-frontal fascicle
 +
|style="background:rgb(221, 160, 221)"|rgb(221, 160, 221)
 
|l SOFF
 
|l SOFF
−
|style="background:rgb(221, 160, 221)"|rgb(221, 160, 221)
 
−
|left superior occipito-frontal fasciculus
 
 
|-
 
|-
 
|37
 
|37
 +
|right cortico-thalamical pathways
 +
|style="background:rgb(245, 222, 179)"|rgb(245, 222, 179)
 
|r CT
 
|r CT
−
|style="background:rgb(245, 222, 179)"|rgb(245, 222, 179)
 
−
|right cortico-thalamical pathways
 
 
|-
 
|-
 
|38
 
|38
 +
|left cortico-thalamical pathways
 +
|style="background:rgb(210, 180, 140)"|rgb(210, 180, 140)
 
|l CT
 
|l CT
−
|style="background:rgb(210, 180, 140)"|rgb(210, 180, 140)
 
−
|left cortico-thalamical pathways
 
 
|-
 
|-
 
|39
 
|39
 +
|right cortico-striatal pathways
 +
|style="background:rgb(244, 164, 96)"|rgb(244, 164, 96)
 
|r CS
 
|r CS
−
|style="background:rgb(244, 164, 96)"|rgb(244, 164, 96)
 
−
|right cortico-striatal pathways
 
 
|-
 
|-
 
|40
 
|40
 +
|left cortico-striatal pathways
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
|l CS
 
|l CS
−
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 
−
|left cortico-striatal pathways
 
 
|-
 
|-
 
|41
 
|41
 +
|right cortico-pontine projections
 +
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 
|r CP
 
|r CP
−
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 
−
|right cortico-pontine projections
 
 
|-
 
|-
 
|42
 
|42
 +
|left cortico-pontine projections
 +
|style="background:rgb(200,200,200)"|rgb(200,200,200)
 
|l CP
 
|l CP
−
|style="background:rgb(200,200,200)"|rgb(200,200,200)
 
−
|left cortico-pontine projections
 
 
|-
 
|-
 
|43
 
|43
 +
|peritumoral fibers
 +
|style="background:rgb(100, 177, 198)"|rgb(100, 177, 198)
 
|PF
 
|PF
−
|style="background:rgb(100, 177, 198)"|rgb(100, 177, 198)
 
−
|peritumoral fibers
 
 
|-
 
|-
 
|44
 
|44
Line 322: Line 323:
 
|
 
|
 
|-
 
|-
−
|69
+
|59
 
|
 
|
 
|style="background:rgb(255,255,255)"|rgb(255,255,255)
 
|style="background:rgb(255,255,255)"|rgb(255,255,255)
Line 333: Line 334:
 
|-
 
|-
 
|61
 
|61
 +
|Probe 1
 +
|style="background:rgb(252,115,105)"|rgb(252,115,105)
 
|P1
 
|P1
−
|style="background:rgb(252,115,105)"|rgb(252,115,105)
 
−
|probe 1
 
 
|-
 
|-
 
|62
 
|62
 +
|Probe 2
 +
|style="background:rgb(222,115,105)"|rgb(222,115,105)
 
|P2
 
|P2
−
|style="background:rgb(222,115,105)"|rgb(222,115,105)
 
−
|probe 2
 
 
|-
 
|-
 
|63
 
|63
 +
|Probe 3
 +
|style="background:rgb(192,115,105)"|rgb(192,115,105)
 
|P3
 
|P3
−
|style="background:rgb(192,115,105)"|rgb(192,115,105)
 
−
|probe 3
 
 
|-
 
|-
 
|64
 
|64
 +
|Probe 4
 +
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 
|P4
 
|P4
−
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 
−
|probe 4
 
 
|}
 
|}

Latest revision as of 07:48, 14 June 2013

Home < Documentation < 4.2 < SlicerApplication < LookupTables < TractographyColors


For the latest Slicer documentation, visit the read-the-docs.


Template:Documentation/4.2/TractographyColors

Work in progress
 WARNING: This LUT is Work in Progress, which means:
  • the label integers and values may change at any time


This is the look-up table for the parcellation of the white matter of the brain.

  • Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab, Nikos Makris


Lookup table

integer_label text_label color notes
0 rgba(0,0,0,0) background
1 corpus callosum rgb(255, 215, 0) CC
2 genu of the corpus callosum rgb(225, 215, 0) CC genu
3 body of the corpus callosum rgb(195, 215, 0) CC body
4 splenium of the corpus callosum rgb(165, 215, 0) CC splenium
5 dorsal hippocampal comissure rgb(122, 120, 170) DHC
6 anterior comissure rgb(92, 140, 170) AC
7 posterior comissure rgb(62, 160, 170) PC
8 forniceal comissure rgb( 32, 180, 170) FC
9 pontine tract rgb(92, 161, 124) PT
10 short cortico-cortical pathway rgb(83,146,164) U
11 right arcuate fascicle rgb(221,130,101) r AF
12 left arcuate fascicle rgb(216,101,79) l AF
13 right inferior occipito-frontal fascicle rgb(144,238,144) r IOFF
14 left inferior occipito-frontal fascicle rgb( 60, 179, 113) l IOFF
15 right inferior longitudinal fascicle rgb(220,245,20) r ILF
16 left inferior longitudinal fascicle rgb(176, 176, 8) l ILF
17 right uncinate fascicle rgb(255,250,220) r UF
18 left uncinate fascicle rgb(230,220,70) l UF
19 right cortico-spinal tract rgb(230, 230, 250) r CST
20 left cortico-spinal tract rgb(200,200,235) l CST
21 right optic radiation rgb(135, 206, 235) r OR
22 left optic radiation rgb(0,151,206) l OR
23 right cingulum bundle rgb(255, 99, 71) r CB
24 left cingulum bundle rgb(250, 90, 90) l CB
25 right superior longitudinal fascicle I rgb(183,214,211) r SLF I
26 left superior longitudinal fascicle I rgb(152,189,207) l SLF I
27 right superior longitudinal fascicle II rgb(178,212,242) r SLF II
28 left superior longitudinal fascicle II rgb(111,184,210) l SLF II
29 right superior longitudinal fascicle III rgb(111,197,131) r SLF III
30 left superior longitudinal fascicle III rgb(68,172,100) l SLF III
31 right middle longitudinal fascicle rgb(85,188,255) r MdLF
32 left middle longitudinal fascicle rgb( 65, 105, 225) l MdLF
33 right extreme capsule rgb(196, 110, 0) r EmC
34 left extreme capsule rgb(160, 82, 45) l EmC
35 right superior occipito-frontal fascicle rgb(216,191,216) r SOFF
36 left superior occipito-frontal fascicle rgb(221, 160, 221) l SOFF
37 right cortico-thalamical pathways rgb(245, 222, 179) r CT
38 left cortico-thalamical pathways rgb(210, 180, 140) l CT
39 right cortico-striatal pathways rgb(244, 164, 96) r CS
40 left cortico-striatal pathways rgb(177,122,101) l CS
41 right cortico-pontine projections rgb(250,250,225) r CP
42 left cortico-pontine projections rgb(200,200,200) l CP
43 peritumoral fibers rgb(100, 177, 198) PF
44 rgb(255,255,255)
45 rgb(255,255,255)
46 rgb(255,255,255)
47 rgb(255,255,255)
48 rgb(255,255,255)
49 rgb(255,255,255)
50 rgb(255,255,255)
51 rgb(255,255,255)
52 rgb(255,255,255)
53 rgb(255,255,255)
54 rgb(255,255,255)
55 rgb(255,255,255)
56 rgb(255,255,255)
57 rgb(255,255,255)
58 rgb(255,255,255)
59 rgb(255,255,255)
60 rgb(255,255,255)
61 Probe 1 rgb(252,115,105) P1
62 Probe 2 rgb(222,115,105) P2
63 Probe 3 rgb(192,115,105) P3
64 Probe 4 rgb(162,115,105) P4
Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/4.2/SlicerApplication/LookupTables/TractographyColors&oldid=32854"