Difference between revisions of "Documentation/4.2/Extensions/DTIProcess"
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* fiberprocess: tool that manage fiber files extracted from the fibertrack tool or any fiber tracking algorithm | * fiberprocess: tool that manage fiber files extracted from the fibertrack tool or any fiber tracking algorithm | ||
* fiberstats: program that prints out some statistics computed on a fiber bundle | * fiberstats: program that prints out some statistics computed on a fiber bundle | ||
| − | * maxcurvature: computes Hessian of an image | + | * maxcurvature: computes Hessian of an image. Typically the input image is a Fractional Anisotropy (FA) image |
* A couple other tools that are included in the package and that are not CLI compatible | * A couple other tools that are included in the package and that are not CLI compatible | ||
Revision as of 18:56, 27 November 2012
Home < Documentation < 4.2 < Extensions < DTIProcess
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WARNING: This page is Work in Progress, which means:
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Introduction and Acknowledgements
Author: Casey Goodlett
Contributors: Aditya Gupta (NIRAL, University Of North Carolina), Clement Vachet (SCI Institute, University of Utah), Francois Budin (NIRAL, University of North Carolina), Guido Gerig (SCI Institute, University of Utah), Hans Johnson (University of Iowa), Martin Styner (NIRAL, University Of North Carolina), Sylvain Gouttard (SCI Institute, University of Utah), Yundi Shi (NIRAL, University of North Carolina), Zhexing Liu (NIRAL, University of North Carolina), Casey Goodlett (Kitware)
Contact: Francois Budin, <email>fbudin@unc.edu</email>
Website: http://www.nitrc.org/projects/dtiprocess/
License: BSD
Extension Description
DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah. Tools in this toolkit include:
- dtiestim: tool that takes in a set of DWIs in nrrd format and estimates a tensor field out of it. It also has many useful options.
- dtiprocess: tool that handles tensor fields
- dtiaverage: program that allows to compute the average of an arbitrary number of tensor fields
- fibertrack: program that implements a simple streamline tractography method based on the principal eigenvector of the tensor field
- fiberprocess: tool that manage fiber files extracted from the fibertrack tool or any fiber tracking algorithm
- fiberstats: program that prints out some statistics computed on a fiber bundle
- maxcurvature: computes Hessian of an image. Typically the input image is a Fractional Anisotropy (FA) image
- A couple other tools that are included in the package and that are not CLI compatible
Modules
Use Cases
Sample data to use with modules.
DICOM-RT Structure Set
DICOM-RT Dose
Before Registration
After Registration
Before Registration
After Registration
Tutorials
Similar Extensions
N/A
References
- G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
- V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
- Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
- G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
- N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
Information for Developers
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Section under construction. |
