https://www.slicer.org/w/index.php?title=Documentation/4.10/Modules/PlmLANDWARP&feed=atom&action=historyDocumentation/4.10/Modules/PlmLANDWARP - Revision history2024-03-28T13:47:34ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.10/Modules/PlmLANDWARP&diff=60240&oldid=prevUpdateBot: Nightly -> 4.102018-10-19T00:47:08Z<p>Nightly -> 4.10</p>
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Extension: [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]<br><br />
Acknowledgments:<br />
*An Ira J Spiro translational research grant (2009)<br />
*NIH / NCI 6-PO1 CA 21239<br />
*The Federal share of program income earned by MGH on C06CA059267<br />
*Progetto Rocca Foundation – A collaboration between MIT and Politecnico di Milano<br />
*The National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant 2-U54-EB005149; information on the National Centers for Biomedical Computing can be obtained from http://nihroadmap.nih.gov/bioinformatics<br />
*NSF ERC Innovation Award EEC-0946463<br />
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Webpage: [http://www.plastimatch.org www.plastimatch.org]<br><br />
Author: Greg Sharp (Department of Radiation Oncology, Massachusetts General Hospital)<br><br />
Contributor1: Julien Finet ({{collaborator|name|kitware}})<br><br />
Contact: Greg Sharp, <email>gcsharp@partners.org</email><br><br />
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This is the plastimatch landmark-based deformable image registration module. The intended application of this method is rapid, interactive correction of registration failures with a small number of mouse clicks. Compared to other landmark-based methods, the plastimatch registration method might offer:<br />
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# both local and global registration<br />
# regularization of the deformation field<br />
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Examples of how this module is being used:<br />
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* Intra-subject registration for adaptive radiotherapy<br />
* Inter-subject registration for automatic segmentation<br />
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|[[Image:before_reg.png|thumb|280px|Before Registration]]<br />
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* '''Input/Output panel:'''<br />
** '''Fixed Volume:''' Here you choose the "fixed image", which is the reference image.<br />
** '''Moving Volume:''' Here you choose the "moving image", which will be warped to match the fixed image.<br />
** '''Output Volume:''' Here you choose where to put the warped image. You can replace an existing image in the scene, or create a new image.<br />
** '''Basis function:''' Here you can choose either tps (thin plate splines), or gauss (Gaussian RBF), or wendland (Wendland RBF).<br />
** '''RBF radius:''' Here you can choose the radius of RBF.<br />
** '''Number of clusters:''' Here you can choose the number of landmark clusters.<br />
** '''Stiffness:''' Here you can choose the regularization parameter.<br />
** '''Default Pixel Value:''' Here you can choose the value for pixels with unknown value.<br />
|[[Image:plastimatch_landmark_gui.png|thumb|280px|User Interface]]<br />
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{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]]<br />
*[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]]<br />
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* G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.<br />
* N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.<br />
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