Difference between revisions of "Documentation/4.10/Extensions/MeshToLabelMap"

From Slicer Wiki
Jump to: navigation, search
(Nightly -> 4.10)
 
m (Text replacement - "<email>(.*)@(.*)<\/email>" to "$1{{@}}$2")
 
Line 6: Line 6:
 
Author: Francois Budin (UNC)<br>
 
Author: Francois Budin (UNC)<br>
 
Contributors: Ipek Oguz (University of Iowa)<br>
 
Contributors: Ipek Oguz (University of Iowa)<br>
Contact: Francois Budin, <email>fbudin@unc.edu</email><br>
+
Contact: Francois Budin, fbudin{{@}}unc.edu<br>
 
Website: https://github.com/NIRALUser/MeshToLabelMap<br>
 
Website: https://github.com/NIRALUser/MeshToLabelMap<br>
 
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]
 
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]

Latest revision as of 05:26, 27 November 2019

Home < Documentation < 4.10 < Extensions < MeshToLabelMap


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements

Author: Francois Budin (UNC)
Contributors: Ipek Oguz (University of Iowa)
Contact: Francois Budin, fbudin@unc.edu
Website: https://github.com/NIRALUser/MeshToLabelMap
License: Apache License, Version 2.0

Extension Description

Quick Tour of Features and Use

This extension computes a label map from a 3D model.

A list panels in the interface, their features, what they mean, and how to use them. A list panels in the interface, their features, what they mean, and how to use them.

  • I/O parameters:
    • Input Mesh [--input_mesh] [--m]: Input mesh to convert into a label map
    • Output Label Map [--output_labelmap] [-l]: Output label map
  • Output label map information:
    • Reference Image [--reference_volume] [-R]: Reference image: used to set the output image size, orientation, spacing and dimensions
    • Pixel Value [--pixel_value] : Label map pixel value (needs to be an integer between 1 and 255 included) Default value: 1
    • Spacing [--spacing] [-s]: Output label map volume spacing (in mm) Default value: -1,-1,-1
    • Boundary Extension [--boundary_extension] [-e]: Extension (in number of voxel) of the boundary box computed from the input mesh Default value: 1,1,1
  • Post-processing parameters:
    • Apply smoothing [--median] : Select if a median image filter smoothing is applied to the output label map Default value: 0
    • Smoothing kernel radius [--median_radius] : Radius (in number of voxel) of the kernel of the median smoothing Default value: -1,-1,-1
  • Advanced parameters:
    • Verbose [--verbose] : Print information while tool in running Default value: 0
Icon

Use Cases

Similar Extensions

N/A

Information for Developers

More information as well as the source code can found on the project webpage: https://github.com/NIRALUser/MeshToLabelMap