Difference between revisions of "Documentation/4.10/Extensions/CardiacMRIToolkit"
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Authors: Alan Morris, Umme Salma Bengali, CARMA Center, University of Utah<br> | Authors: Alan Morris, Umme Salma Bengali, CARMA Center, University of Utah<br> | ||
Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah<br> | Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah<br> | ||
| − | Contacts: Alan Morris: | + | Contacts: Alan Morris: alan.morris{{@}}carma.utah.edu, Salma Bengali: salma.bengali{{@}}carma.utah.edu<br> |
Website: [http://capulet.med.utah.edu/namic/cmrslicer/ Slicer CMR Toolkit] <br> [http://carmacenter.org http://carmacenter.org] <br> | Website: [http://capulet.med.utah.edu/namic/cmrslicer/ Slicer CMR Toolkit] <br> [http://carmacenter.org http://carmacenter.org] <br> | ||
[http://www.na-mic.org/Wiki/index.php/DBP3:Utah http://www.na-mic.org/Wiki/index.php/DBP3:Utah] | [http://www.na-mic.org/Wiki/index.php/DBP3:Utah http://www.na-mic.org/Wiki/index.php/DBP3:Utah] | ||
Latest revision as of 05:26, 27 November 2019
Home < Documentation < 4.10 < Extensions < CardiacMRIToolkit
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the NA-MIC website. | |||
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Extension Description
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The Cardiac MRI Toolkit extension consists of several modules that can be used in the analysis of cardiac LGE-MRI images for the purpose of studying cardiac arrhythmia. |
Modules
- CMR Toolkit Wizard
- Automatic Cardiac MRI Inhomogeneity Correction Filter
- Automatic Left Atrial (Post-ablation) Scar Detection
- Cardiac MRI Registration
- Cardiac MRI Registration Using BRAINSFit
- PV Antrum Cut Filter
- 2D Axial Dilate Filter
- Boolean REMOVE Filter
- Scar Visualization
- Isolated Connected Image Filter
- Connected Threshold Image Filter
- Automated LA Segmentation
- LA Segmentation Workflow
Use Cases
- Sample data:
- Sixty anonymized datasets containing LGE-MRI image data and segmentations of the left atrium from patients with atrial fibrillation: Pre and Post Radiofrequency Ablation LGE-MRI Collection
- Sixty segmentation datasets of the left atrium from patients with atrial fibrillation who have undergone radiofrequency catheter ablation for treatment: CARMA Longitudinal Left Atrial Shape Data
- Automatic scar detection from cardiac LGE-MRI scans
- Segmentation of the heart
- Cardiac LGE-MRI image registration
- Various operations on segmentation masks
Lookup Table
Tutorials
Information for Developers
The source code for this extension can be found at the CARMA GitHub repository.
