Difference between revisions of "Documentation/4.1/SlicerApplication/LookupTables"

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file:CartilageMRI-LUTs-2012-02-18.png|''Cartilage MRI LUTs''
 
file:CartilageMRI-LUTs-2012-02-18.png|''Cartilage MRI LUTs''
 
file:Labelmap-LUTs-2012-02-18.png|''Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/2010BrainLabels|2010 Brain Labels]]: Label colors for brain segmentation<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/2010LabelColors|2010 Label Colors]]: Colors for a generic labelmap
 
file:Labelmap-LUTs-2012-02-18.png|''Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/2010BrainLabels|2010 Brain Labels]]: Label colors for brain segmentation<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/2010LabelColors|2010 Label Colors]]: Colors for a generic labelmap
file:GenericLabel-LUTs-2012-02-18.png|''Generic Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/4.1/SlicerApplication/LookupTables/GenericAnatomyColors|Generic Anatomy Colors]]: default LUT<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/GenericColors|Generic Colors]]
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file:GenericLabel-LUTs-2012-02-18.png|''Generic Labelmap LUTs''<br>&nbsp;&nbsp;&nbsp;&nbsp;[[Documentation/4.1/SlicerApplication/LookupTables/GenericAnatomyColors|Generic Anatomy Colors]]: default LUT
 
</gallery>
 
</gallery>
  
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==LUTs for Slicer4==
 
==LUTs for Slicer4==
 
*[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/GenericAnatomyColors|Default Generic Anatomy Colors LUT for Slicer {{documentation/version}}]]
 
*[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/GenericAnatomyColors|Default Generic Anatomy Colors LUT for Slicer {{documentation/version}}]]
*[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables/GenericColors|Generic Colors]]
 
  
 
==Brain Atlas LUTs==
 
==Brain Atlas LUTs==

Revision as of 21:23, 28 August 2012

Home < Documentation < 4.1 < SlicerApplication < LookupTables



Overview

Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, see the Colors Module.

LUTs

LUTs for Charting

Please see the Generic Chart Colors page.

LUTs in Slicer

You can review and edit LUTs in Slicer via the Colors module.

Slicer ColorPicker

The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines.

SlicerColorPicker-2012-02-18.png

LUTs for Slicer4

Brain Atlas LUTs

Custom LUTs

It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.

integer_label text_label color notes
0 background rgba(0,0,0,0)
1 tissue rgb(128,174,128) Default label for bodily tissues
2 bone rgb(241,214,145)
3 skin rgb(177,122,101)
4 connective tissue rgb(111,184,210)


Custom LUT Examples

Useful Links