Difference between revisions of "Documentation/4.1"

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{{documentation/versionlist}}
 
{{documentation/versionlist}}
  
=Table of Content=
 
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
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|-  
 
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----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 +
----
 +
* [[Documentation/{{documentation/version}}/Training|Training pages]]
 +
: Information on how to use Slicer {{documentation/version}}
  
===Slicer Application===
+
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
 +
: Set of common questions/answers
 +
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives]
 
----
 
----
*[[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI| Main Application GUI]]
+
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
 
+
----
*[[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts | Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
+
* [[Documentation/{{documentation/version}}/Report a problem|Report a problem]]
 
 
*[[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration | '''Computer Configurations''']]
 
*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]]. (Julien Finet)
 
<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
 
*[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]]
 
*[[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
 
 
 
===Mailing Lists===
 
 
----
 
----
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users]
+
{{:{{FULLPAGENAME}}/SlicerApplication}}
:[http://slicer-users.65878.n3.nabble.com/ Search] in archives on nabble.com
 
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Mailing list for developers]
 
:[http://slicer-devel.65872.n3.nabble.com/ Search] in archives on nabble.com
 
 
 
<!--
 
*[[Modules:ExtensionsManagementWizard-Documentation-4.0| Extensions Management Wizard]] (xx)
 
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|valign="top"|
 
+
----
===Module Categories ===
+
<span style="color: #555555; font-size: 18px; font-weight: bold;">Module Categories</span>
 
----
 
----
 
* [[#Core Modules|Core Modules]]
 
* [[#Core Modules|Core Modules]]
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* [[#Converters|Converters]]
 
* [[#Converters|Converters]]
 
* [[#Endoscopy|Endoscopy]]
 
* [[#Endoscopy|Endoscopy]]
 +
* [[#Work in Progress| Work in Progress]]
 
* [[#Developer Tools|Developer Tools]]
 
* [[#Developer Tools|Developer Tools]]
 
* [[#Legacy|Legacy]]
 
* [[#Legacy|Legacy]]
 +
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
 
|valign="top"|
 
|valign="top"|
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
 +
----
 +
* [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]]
 +
: Source code, contribute patch, develop modules
  
===Miscellaneous===
+
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 +
: Intended for discussion of programming related questions
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
----
 
----
 
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
 
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
 +
 +
* [[Documentation/4.1/HowTo|Documentation guidelines]]
 +
:  Slicer user documentation principle and guidelines
  
 
* [[Slicer4:VisualBlog|Visual blog]]
 
* [[Slicer4:VisualBlog|Visual blog]]
 
: Set of screenshots showing Slicer in action.
 
: Set of screenshots showing Slicer in action.
 
<!--
 
* [[Documents and links]]
 
: Set of presentations made on Slicer and document talking about it.
 
 
-->
 
* [[Documentation/4.0/Training|Training pages]]
 
: Information on how to use Slicer {{documentation/version}}
 
 
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
 
: Set of common questions/answers
 
  
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]
 
: Platform specific issues and considerations
 
: Platform specific issues and considerations
  
* [[Documentation/{{documentation/version}}/Announcements|Announcements]]
+
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
: the announcement associated with Slicer {{documentation/version}}
 
  
===Developers Corner===
+
* [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library]
----
+
: Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.  
* [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]]
 
: Where to find the source code, how to compile ...
 
|}
 
 
 
=General Information=
 
{|width="100%"
 
|rowspan="3"|
 
{{Infobox
 
|name        = 3D Slicer {{documentation/version}}
 
|above        = 3D Slicer
 
|abovestyle  =
 
 
 
|image        = [[File:3DSlicer41Logo-H-218X144.png|218px|alt=3D Slicer {{documentation/version}}]]
 
|imagestyle  =
 
|headerstyle  = background:#E7DCC3;
 
|labelstyle  =
 
|datastyle    =
 
  
|header1 = Description
 
|label1  =
 
|data1  =
 
|header2 =
 
|label2  =
 
|data2  = Research platform for the analysis and visualization of medical images, including image guided therapy.
 
|header3 =
 
|label3  =
 
|data3  = Free and extensible open source package.
 
|header4 =
 
|label4  = Multi-platform
 
|data4  = Linux, MacOSX, Windows
 
|header5 =
 
|label5  = Version
 
|data5  = {{documentation/version}}
 
|header6 =
 
|label6  = License
 
|data6  = [http://www.slicer.org/pages/LicenseText Contribution and Software License Agreement]
 
}}
 
|align="center"|
 
[[{{collaborator|logo|slicer4}}|x350px]]
 
|-
 
|
 
{{ombox
 
|type=content
 
|text=The {{documentation/version}} release of 3D Slicer contains significant changes both to the organization of the software and to the functionality. Please check the [[Documentation/{{documentation/version}}/Announcements | Announcement]] page for more details. The community contributing to Slicer {{documentation/version}} is acknowledged [http://www.slicer.org/pages/Acknowledgments here].
 
}}
 
<!--|-
 
|
 
{{ombox | text = For information on how to obtain Slicer {{documentation/version}} please go to the [[Snapshots|Download Pages]]. }}-->
 
 
|}
 
|}
  
=Modules by Category=
+
{{:{{FULLPAGENAME}}/Modules}}
==Core Modules==
 
*[[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/Colors|Colors]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/Data|Data]] (Julien Finet)
 
*[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] (Steve Pieper)
 
*[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper)
 
*[[Documentation/{{documentation/version}}/Modules/Models|Models]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/SceneViews|SceneViews]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] (Alex Yarmarkovich)
 
*[[Documentation/{{documentation/version}}/Modules/ViewControllers|View Controllers]] (Jim Miller)
 
*[[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] (Steve Pieper)
 
*[[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] (Julien Finet)
 
*[[Documentation/{{documentation/version}}/Modules/SlicerWelcome|Welcome to Slicer]] (Wendy Plesniak)
 
 
 
==Wizards==
 
*[[Documentation/{{documentation/version}}/Modules/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
 
 
 
==Informatics==
 
*[[Documentation/{{documentation/version}}/Modules/SampleData|Sample Data]] (Steve Pieper)
 
 
 
==Registration==
 
*[[:Category:Documentation/{{documentation/version}}/Modules/Registration|Introduction to Registration]] (Dominik Meier)
 
*[[Documentation/{{documentation/version}}/Modules/BRAINSFit|General Brainsfit Registration]] (Hans Johnson)
 
*[[Documentation/{{documentation/version}}/Modules/BRAINSResample|Resample Image (BRAINS)]] (Hans Johnson)
 
*Specialized
 
**[[Documentation/{{documentation/version}}/Modules/ACPCTransform|ACPC Transform]] (Nicole Aucoin)
 
**[[Documentation/{{documentation/version}}/Modules/BRAINSDemonWarp|Demon Registration (BRAINS)]] (Hans Johnson)
 
**[[Documentation/{{documentation/version}}/Modules/FiducialRegistration|Fiducial Registration]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]
 
**Vector Demon Registration (Hans Johnson)
 
**[[Documentation/{{documentation/version}}/Modules/Reformat|Reformat]] (Michael Jeulin-Lagarrigue)
 
 
 
==Segmentation==
 
*[[Documentation/{{documentation/version}}/Modules/EMSegment Easy|EMSegment Easy (no atlas)]] (Kilian Pohl)
 
*[[Documentation/{{documentation/version}}/Modules/EMSegmenter|EMSegment (with atlas)]] (Kilian Pohl)
 
*[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan)
 
*Specialized
 
**[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl)
 
**[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson)
 
**[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao)
 
 
 
==Quantification==
 
*[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper)
 
*[[Documentation/{{documentation/version}}/Modules/LabelStatistics|Label Statistics]] (Steve Pieper)
 
*[[Documentation/{{documentation/version}}/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] (Nicole Aucoin)
 
* Change quantification
 
** [[Documentation/{{documentation/version}}/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov)
 
 
 
==Diffusion==
 
*DWI to Full Brain Tractography (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
*Denoising
 
**[[Documentation/{{documentation/version}}/Modules/DWIJointRicianLMMSEFilter|DWI Joint Rician LMMSE Image Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/DWIRicianLMMSEFilter|DWI Rician LMMSE Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
*Tractography
 
**[[Documentation/{{documentation/version}}/Modules/TractographyDisplay|Tractography Display]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/TractographyFiducialSeeding|Tractography Fiducial Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] (Demian Wasserman)
 
*Utilities
 
**[[Documentation/{{documentation/version}}/Modules/DWIToDTIEstimation|DWI To DTI Estimation]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman)
 
**[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
 
*Data Conversion
 
**[[Documentation/{{documentation/version}}/Modules/DTIImport|DTIImport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol)
 
**[[Documentation/{{documentation/version}}/Modules/DTIExport|DTIExport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol)
 
 
 
==IGT==
 
*[[Documentation/{{documentation/version}}/Modules/OpenIGTLinkIF| OpenIGTLink IF]] (Junichi Tokuda) [[image:UnderConstruction.png|tumb|10px]]
 
 
 
==Filtering==
 
*[[Documentation/{{documentation/version}}/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov)
 
*[[Documentation/{{documentation/version}}/Modules/CheckerBoardFilter|CheckerBoard Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/ExtractSkeleton|Extract Skeleton]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/HistogramMatching|Histogram Matching]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich)
 
*[[Documentation/{{documentation/version}}/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]] (Francois Budin) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*Arithmetic
 
**[[Documentation/{{documentation/version}}/Modules/AddScalarVolumes|Add Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/CastScalarVolume| Cast Scalar Volume]] (Nicole Aucoin)
 
**[[Documentation/{{documentation/version}}/Modules/MaskScalarVolume| Mask Scalar Volume]] (Nicole Aucoin)
 
**[[Documentation/{{documentation/version}}/Modules/MultiplyScalarVolumes| Multiply Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/SubtractScalarVolumes| Subtract Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*Denoising
 
**[[Documentation/{{documentation/version}}/Modules/GradientAnisotropicDiffusion |Gradient Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/MedianImageFilter|Median Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*Morphology
 
**[[Documentation/{{documentation/version}}/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] (Jim Miller)
 
**[[Documentation/{{documentation/version}}/Modules/GrayscaleGrindPeakImageFilter|GGrayscale Grind Peak Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
 
 
==Surface Models==
 
*[[Documentation/{{documentation/version}}/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/LabelMapSmoothing|Label Map Smoothing]] [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/MergeModels| Merge Models]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/ModelMaker| Model Maker]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/ModelToLabelMap| Model To LabelMap]] (Nicole Aucoin)
 
*[[Documentation/{{documentation/version}}/Modules/ProbeVolumeWithModel| Probe Volume With Model]] (Lauren O'Donnell) [[image:UnderConstruction.png|tumb|10px]]
 
 
 
==Converters==
 
*[[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/Crop Volume|Crop Volume]] (Andrey Fedorov)
 
*[[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Jim Miller)
 
*[[Documentation/{{documentation/version}}/Modules/OrientScalarVolume| Orient Scalar Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
 
 
==Endoscopy==
 
*[[Documentation/{{documentation/version}}/Modules/Endoscopy|Endoscopy]] (Steve Pieper)
 
 
 
==Developer Tools==
 
*[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/EventBroker|Event Broker]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/ExecutionModelTour |Execution Model Tour]] (JC Fillion-Robin)  [[image:UnderConstruction.png|tumb|10px]]
 
*[[Documentation/{{documentation/version}}/Modules/YOURMODULENAME|Module Template]] (JC Fillion-Robin)
 
*Performance Tests
 
*Tractography
 
 
 
==Legacy==
 
*Converters
 
**[[Documentation/{{documentation/version}}/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
 
*Diffusion
 
**Denoising
 
***[[Documentation/{{documentation/version}}/Modules/DWIUnbiasedNonLocalMeansFilter|DWI Unbiased Non Local Means Filter]]
 
*Filtering
 
**[[Documentation/{{documentation/version}}/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/ResampleScalarVolume|Resample Scalar Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
 
*Registration
 
**[[Documentation/{{documentation/version}}/Modules/RigidRegistration|Rigid Registration]] (Jim Miller)  [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/BSplineDeformableRegistration|BSpline Deformable Registration]] [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/LinearRegistration|Linear Registration]] [[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/MultiResolutionAffineRegistration|MultiResolution Affine Registration]] [[image:UnderConstruction.png|tumb|10px]]
 
<!--
 
**[[Documentation/{{documentation/version}}/Modules/TestGridTransformRegistration|Test Grid Transform Registration]] [[image:UnderConstruction.png|tumb|10px]]
 
-->
 
*Segmentation
 
**[[Documentation/{{documentation/version}}/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]
 
 
 
=Extensions=
 
==Introduction==
 
[[Documentation/4.1/Extensions|Extensions]] which can be added to the basic Slicer package in order to add functionality. The slicer community maintains a website to support finding, downloading and installing Extensions for 3D Slicer 4. Access to this website is integral to Slicer 4 and facilitated by the Extensions Manager functionality built into the distributed program. Please see [[Documentation/{{documentation/version}}/Developers/Tutorials/ExtensionWriting|here]] for information for software developers on how to add your extension to this website.
 
 
 
The download site is referred to as the '''Slicer Extensions Catalog'''. The Catalog classifies extensions into three levels of compliance:
 
*Category 1: Fully compliant Slicer Extensions: Slicer license, open source, maintained.
 
*Category 2: open source, contact exists.
 
*Category 3: all other extensions (work in progress, beta, closed source etc).
 
 
 
See [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionCatalogPolicies|here]] for more information about extension types and policies.
 
 
 
==Cat 1==
 
 
 
==Cat 2==
 
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)[[image:UnderConstruction.png|tumb|10px]]
 
 
 
==Cat 3==
 
* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 

Latest revision as of 07:27, 14 June 2013

Home < Documentation < 4.1


For the latest Slicer documentation, visit the read-the-docs.


Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS


Where to start ?


Information on how to use Slicer 4.1
Set of common questions/answers

How to



Slicer Application




Module Categories



Developers Corner


Source code, contribute patch, develop modules
Intended for discussion of programming related questions

Miscellaneous


Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.


Modules by Category

Core Modules

Wizards

Informatics

Registration

Segmentation

Quantification

Diffusion

IGT

Filtering

Surface Models

Converters

Endoscopy

tumb Work in Progress tumb

Developer Tools

Legacy