CCA:Atlases:Florins 2010 Hierarchy

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Contents

Segmentation regions

  • unsegmented region
  • background
  • annotation
    • annotation 1
    • annotation 2
    • annotation 3
    • annotation 4
    • annotation 5
    • annotation 6
    • annotation 7
    • annotation 8
    • annotation 9
    • annotation 10
    • annotation 11
    • annotation 12
    • annotation 13
    • annotation 14
    • annotation 15
    • annotation 16
  • user defined region
    • region 1
    • region 2
    • region 3
    • region 4
    • region 5
    • region 6
    • region 7
    • region 8
    • region 9
    • region 10
    • region 12
    • region 13
    • region 14
    • region 15
    • region 16

Tissue type

  • gray matter
  • white matter
  • cerebro-spinal fluid (CSF)
  • bone
  • blood
  • cartilage
  • air

Pathology

  • Tumor
  • Edema
  • Bleeding

Body

Head

Soft tissue of the head

  • Skin
  • Muscles
    • Masticatory muscles
      • temporal muscle
      • masseter muscle
      • lateral pterygoid muscle
      • medial pterygoid muscle
    • Facial muscles
      • frontal muscle
      • corrugator muscle
      • orbicularis occulis muscle
      • levator angulis oris muscle
      • orbicularis oris muscle
      • risorius muscle
      • nasalis muscle
      • mentalis muscle
      • depressor labii inferioris muscle
      • depressor angulis oris muscle
      • buccinator muscle
      • occipitalis muscle
  • Salivary glands
    • parotid glands
    • sublingual glands
    • submandibular glands
  • Tongue
  • Soft palate
  • Tonsils
  • External ear
  • Middle ear
  • Internal ear
  • Eyes
  • Extraocular muscles

Skull

  • frontal bone
  • parietal bone
  • temporal bone
  • sphenoid bone
  • ethmoid bone
  • occipital bone
  • maxilla
  • zygomatic bone
  • lacrimal bone
  • vomer bone
  • palatine bone
  • mandible

Teeth

Central nervous system

Meninges

  • Dura mater
  • Arachnoid
  • Pia mater

Brain

  • CSF spaces
    • ventricles
      • right lateral ventricle
      • left lateral ventricle
      • third ventricle
      • cerebral aqueduct
      • fourth ventricle
    • subarachnoid space (including cysterns)
  • brain parenchyma
    • gray matter of brain
      • telencephalon
        • cerebral cortex
          • frontal lobe
            • superior frontal gyrus
            • middle frontal gyrus
            • inferior frontal gyrus
            • orbital gyri
            • straight gyrus
            • precentral gyrus
            • paracentral lobule
            • frontal pole
          • temporal lobe
            • superior temporal gyrus
            • middle temporal gyrus
            • inferior temporal gyrus
            • hippocampus
            • parahippocampal gyrus
            • medial occipitotemporal gyrus (temporal part)
            • lateral occipitotemporal gyrus (temporal part)
            • uncus
            • temporal pole
          • parietal lobe
            • postcentral gyrus
            • superior parietal lobule
            • inferior parietal lobule
            • precuneus
          • occipital lobe
            • superior occipital gyri
            • inferior occipital gyri
            • gyrus descendens
            • lingual gyrus
            • medial occipitotemporal gyrus (occipital part)
            • lateral occipitotemporal gyrus (occipital part)
            • cuneus
            • occipital pole
          • insular lobe
            • gyrus ambiens (limen insulae)
            • long insular gyrus
            • short insular gyri
          • limbic lobe
            • cingulate gyrus
            • paraterminal gyrus
            • indusium griseum
            • olfactory bulb
            • olfactory tract
        • subcortical gray matter of telencephalon
          • striatum
            • nucleus accumbens
            • caudate nucleus
            • putamen
          • pallidum
            • globus pallidus pars externa
            • globus pallidus pars interna
          • septal nuclei
          • amygdaloid complex
          • claustrum
      • diencephalon
        • thalamus
          • thalamic nuclei
        • subthalamus
          • subthalamic nucleus
        • hypothalamus
          • hypothalamic nuclei
          • mamillary bodies
          • substantia perforata
            • anterior substantia perforata
            • posterior substantia perforata
          • pituitary infundibulum
        • epithalamus
          • habenula
            • habenular nuclei
          • pineal body
        • gray matter of mesencephalon
          • red nucleus
          • substantia nigra
            • substantia nigra pars compacta
            • substantia nigra pars reticularis
          • superior colliculus
          • inferior colliculus
          • occulomotor nerve nucleus (CN III)
          • trochlear nerve nucleus (CN IV)
          • mesencephalic nucleus of the trigeminal nerve (CN V)
          • periaqueductal gray matter
        • gray matter of metencephalon
          • gray matter of pons
            • principal sensory nucleus of trigeminal nerve (CN V)
            • motor nucleus of the trigeminal nerve (CN V)
            • abducent nerve nucleus
            • facial nerve nucleus
          • cerebellar gray matter
            • cerebellar cortex
            • subcortical cerebellar gray matter
              • dentate nucleus
              • emboliform nucleus
              • globose nucleus
              • fastigial nucleus
          • gray matter of myelencephalon (medulla oblongata)
            • spinal nucleus of the trigeminal nerve (CN V)
            • cochlear nuclei (CN VIII)
            • vestibular nuclei (CN VIII)
            • superior salivatory nucleus
            • inferior salivatory nucleus
            • nucleus ambiguus
            • posterior (dorsal nucleus) of the vagus nerve (CN X)
            • solitary tract nucleus
            • hipoglossal nerve nucleus
    • cerebral white matter
      • association white matter tracts
        • U-fibers
        • superior longitudinal fasciculus
        • inferior longitudinal fasciculus
        • arcuate fasciculus
        • uncinate fasciculus
        • cingulum
      • projection fibers
        • corticospinal tract
        • corticomesencephalic tract
        • corticopontine tract
        • corticobulbar tract
        • optic radiation
        • thalamo-cortical projection fibers
        • medial lemniscus
        • lateral lemniscus
        • superior cerebellar peduncles
        • middle cerebellar peduncles
        • inferior cerebellar peduncles
        • optic nerves, optic chiasm, optic tracts
        • fornix
        • mamilo-thalamic tract
        • mamilo-mesencephalic tract
        • thalamic fasciculus
          • ansa lenticularis
          • lenticular fasciculus
      • commissural fibers
        • corpus callosum
        • anterior commissure
        • posterior commissure
    • cerebellar white matter

Spinal cord

  • Gray matter of spinal cord
    • anterior horn
    • posterior horn
    • intermediate horn
  • White matter of spinal cord
    • Anterior column
    • Lateral column
    • Posterior column

Other structures

  • Pituitary gland
    • Adenohypophysis
    • Neurohypophysis

Neck

Soft tissue of the neck

Skin

Muscles

Pharynx

Larynx

Thyroid gland

Parathyroid glands

Skeleton of the neck

  • Hyoid bone
  • Cervical spinal column
    • Cervical vertebrae (C1-C7)
      • cervical vertebra C1
      • cervical vertebra C2
      • cervical vertebra C3
      • cervical vertebra C4
      • cervical vertebra C5
      • cervical vertebra C6
      • cervical vertebra C7

Thorax

Soft tissue of thorax

Soft tissue of thoracic wall

Skin
Muscles
Contents of thoracic cavity

Trachea

Bronchi

  • Right main bronchus
  • Left main bronchus

Right lung

  • Superior lobe
  • Middle lobe
  • Inferior lobe

Left lung

  • Superior lobe
  • Inferior lobe

Pleura

  • Parietal pleura
  • Visceral pleura
  • Pleural cavity

Heart

  • Right atrium
  • Left atrium
  • Atrial septum
  • Ventricular septum
  • Right ventricle
    • Papillary muscles
    • Chordae tendineae
  • Left ventricle
    • Papillary muscles
    • Chordae tendineae
  • Mitral valve
  • Tricuspid valve
  • Aortic valve
  • Pulmonary valve

Pericardium

  • Pericardial cavity

Esophagus

Thymus

Mediastinum

Skeleton of thorax

  • Thoracic vertebral column
    • Thoracic vertebrae (T1-T12)
      • thoracic vertebra T1
      • thoracic vertebra T2
      • thoracic vertebra T3
      • thoracic vertebra T4
      • thoracic vertebra T5
      • thoracic vertebra T6
      • thoracic vertebra T7
      • thoracic vertebra T8
      • thoracic vertebra T9
      • thoracic vertebra T10
      • thoracic vertebra T11
      • thoracic vertebra T12
  • Ribs (I-XII)
    • Rib I
    • Rib II
    • Rib III
    • Rib IV
    • Rib V
    • Rib VI
    • Rib VII
    • Rib VIII
    • Rib IX
    • Rib X
    • Rib XI
    • Rib XII
  • Sternum
    • Manubrium
    • Body
    • Xyphoid process
  • Clavicles

Abdomen

Soft tissue of abdomen

Soft tissue of abdominal wall

Skin
Muscles
Contents of abdominal cavity
  • Peritoneum
    • Parietal peritoneum
    • Visceral peritoneum
    • Omentum
    • Peritoneal cavity
      • Bursa omentalis
      • Douglas' recess
    • Falciform ligament of liver
    • Mesentery
    • Mesocolon
      • Transverse mesocolon
      • Sigmoid mesocolon
    • Broad ligament of uterus
      • Mesometrium
      • Mesosalpinx
      • Mesovarium
  • Retroperitoneal space
  • Stomach
      • Cardia
      • Fundus
      • Body of stomach
      • Pylorum
  • Duodenum
    • Ampulla of Vater
  • Small bowel
    • Jejunum
    • Ileum
  • Colon
    • Cecum
      • Ileocecal valve
      • Appendix
    • Ascending colon
    • Transverse colon
    • Sigmoid colon
    • Rectum
    • Anus
  • Liver
    • Capsule
    • Right lobe
    • Left lobe
    • Caudate lobe
    • Quadrate lobe
    • Ligamentum teres
  • Biliary tree
    • Right hepatic duct
    • Left hepatic duct
    • Common hepatic duct
    • Common bile duct
    • Cystic duct
    • Gallblader
  • Pancreas
    • Head
    • Body
    • Tail
    • Pancreatic duct (duct of Wirsung)
    • Islets of Langerhans
  • Spleen
  • Kidney (R+L)
    • Right kidney
    • Left kidney
    • Parenchyma
      • Cortex
      • Medulla
    • Pelvis
  • Ureter (R+L)
    • Right ureter
    • Left ureter
  • Urinary bladder
  • Uretra
  • Suprarenal glands
    • Corticosuprarenal glands
    • Medullosuprarenal glands
  • Female internal genitalia
    • Uterus
      • Fundus
      • Body
      • Cervix
      • Round ligaments
      • Uterosacral ligaments
      • Pubocervical ligament
    • Fallopian tubes
    • Ovaries
    • Vagina
  • Male internal genitalia
    • Prostate
    • Seminal vesicles
    • Deferent ducts

Skeleton of Abdomen

Lumbar spine

  • Lumbar vertebrae (L1-L5)
    • lumbar vertebra L1
    • lumbar vertebra L2
    • lumbar vertebra L3
    • lumbar vertebra L4
    • lumbar vertebra L5

Sacrum

Coccis

Coxal bones

Female external genitalia

Vulva

  • Vestibule
  • Hymen
  • Major labia
  • Minor labia
  • Praeputium
  • Clitoris
    • Glans
    • Clitoral crura
      • Cavernous bodies
  • Bartolin's glands

Male external genitalia

Penis

  • Glans
    • Meatus
  • Shaft
    • Cavernous bodies
    • Spongious body
  • Preputium

Scrotum

  • Skin
  • Dartos layer
  • Cremaster muscle
  • Testicles
    • Epididimis
    • Spermatic cord

Upper extremity

Arm and shoulder

Soft tissue of arm and shoulder

  • Skin
  • Muscles and tendons

Skeleton of arm and shoulder

  • Scapula
  • Humerus

Forearm

Soft tissue of forearm

  • Skin
  • Muscles and tendons

Skeleton of forearm

  • Radius
  • Ulna

Hand

Soft tissue of hand

  • Skin
  • Muscles and tendons

Skeleton of hand

  • Carpus
    • Scaphoid
    • Lunate
    • Triquetrum
    • Pisiform
    • Trapezium
    • Trapezoid
    • Capitate
    • Hamate
  • Metacarpus
    • Metacarpals I-V
      • metacarpal I
      • metacarpal II
      • metacarpal III
      • metacarpal IV
      • metacarpal V
  • Phalanges

Lower extremity

Hip and Thigh

Soft tissue of hip and thigh

Soft tissue of hip and thigh
  • Skin of hip and thigh
  • Muscles and tendons of hip and thigh
Skeleton of hip and thigh
  • Femur

Leg

Soft tissue of leg

  • Skin of leg
  • Muscles and tendons of leg

Skeleton of leg

  • Tibia
  • Peroneus

Foot

Soft tissue of foot
  • Skin of foot
  • Muscles and tendons of foot
Skeleton of foot
  • Tarsus
    • Talus
    • Calcaneus
    • Navicular
    • First Cuneiform
    • Second Cuneiform
    • Third Cuneiform
    • Cuboid
  • Metatarsus
    • Metatarsals I-V
      • metatarsal I
      • metatarsal II
      • metatarsal III
      • metatarsal IV
      • metatarsal V
  • Phalanges

Peripheral nervous system

Cranial nerves

  • Olfactory nerve (CN I)
  • Optic nerve (CN II)
  • Oculomotor nerve (CN III)
  • Trochlear nerve (CN IV)
  • Trigeminal nerve (CN V)
  • Abducent nerve (CN VI)
  • Facial nerve (CN VII)
  • Intermediate nerve (nervus intermedius, CN VII b)
  • Vestibulo-cochlear nerve (CN VIII)
  • Glossopharyngeal nerve (CN IX)
  • Vagal nerve (CN X)
  • Accessory nerve (CN XI)
  • Hypoglossal nerve (CN XII)

Spinal nerves

Nervous plexi and intercostal nerves

  • Cervical plexus
    • Lesser occipital nerve
    • Great auricular nerve
    • Transverse cervical nerve
    • Supraclavicular nerve
    • Ansa cervicalis
    • Phrenic nerve
    • Segmental branches C1-C4
      • segmental branch C1
      • segmental branch C2
      • segmental branch C3
      • segmental branch C4
  • Brachial plexus
    • Dorsal scapular nerve
    • Suprascapular nerve
    • Nerve to subclavius
    • Lateral pectoral nerve
    • Musculocutaneus nerve
    • Axillary nerve
    • Median nerve
    • Ulnar nerve
    • Radial nerve
    • Medial cutaneous nerve of the arm
    • Medial cutaneous nerve of the forearm
    • Lower subscapular nerve
    • Thoracodorsal nerve
    • Medial pectoral nerve
    • Upper subscapular nerve
    • Long thoracic nerve
  • Intercostal nerves I-XI
  • Intercostal nerve I
  • Intercostal nerve II
  • Intercostal nerve III
  • Intercostal nerve IV
  • Intercostal nerve V
  • Intercostal nerve VI
  • Intercostal nerve VII
  • Intercostal nerve VIII
  • Intercostal nerve IX
  • Intercostal nerve X
  • Intercostal nerve XI
  • Lumbosacral plexus
    • Iliohypogastric nerve
    • Ilioinguinal nerve
    • Genitofemoral nerve
    • Lateral cutaneous femoral nerve
    • Femoral nerve
    • Obturator nerve
    • Accessory obturator nerve
    • Sciatic nerve
      • Common fibular nerve
      • Tibial nerve
    • Perforating cutaneous nerve
    • Pudendal nerve
    • Anococcigeal nerves

Circulatory system

Systemic arterial system

  • Aorta
    • Right coronary artery
    • Left coronary artery
    • Aortic arch
      • Right brachiocephalic trunc
        • Right subclavian artery
          • Right vertebral artery
            • Anterior spinal artery
            • Posterior inferior cerebellar artery
            • Basilar artery
              • Anterior inferior cerebellar artery
              • Pontine arteries
              • Superior cerebellar artery
              • Posterior cerebellar artery
          • Internal thoracic artery
          • Thyrocervical trunk
          • Costocervical trunk
          • Dorsal scapular artery
          • Axillary artery
            • Brachial artery
        • Right common carotid artery
          • Right external carotid artery
          • Right internal carotid artery
            • Right opthalmic artery
            • Right anterior cerebral artery
              • Anterior communicating artery
          • Right middle cerebral artery
          • Right posterior communicating artery
      • Left common carotid artery
        • Left external carotid artery
        • Left internal carotid artery
          • see right internal carotid artery
      • Left subclavian artery
        • see right subclavian artery
    • Descending thoracic aorta
      • Bronchial arteries
      • Esophageal arteries
      • Posterior intercostal arteries
    • Abdominal aorta
      • Inferior phrenic artery
      • Celiac trunk
      • Superior mesenteric artery
      • Middle suprarenal artery
      • Renal artery
      • Gonadal (ovarian/testicular) artery
      • Lumbar arteries
      • Inferior mesenteric artery
      • Median sacral artery
      • Right common iliac artery
        • Right external iliac artery
          • Inferior epigastric artery
          • Deep circumflex iliac artery
          • Femoral artery
        • Right internal iliac artery
          • Right iliolumbar artery
          • Right lateral sacral arteries
          • Right superior gluteal artery
          • Right obturator artery
          • Right inferior gluteal artery
          • Right umbilical artery
          • Right uterine/deferential artery
          • Right inferior vesical artery
          • Right middle rectal artery
          • Right internal pudendal artery
      • Left common iliac artery
        • Left external iliac artery
        • Left internal iliac artery

Systemic venous system

  • Superior vena cava
  • Inferior vena cava
  • Azygos vein
  • Hemyazygos vein
  • Portal vein

Pulmonary arterial system

  • Right pulmonary artery
  • Left pulmonary artery

Pulmonary venous system

  • Right superior pulmonary vein
  • Right inferior pulmonary vein
  • Left superior pulmonary vein
  • Left inferior pulmonary vein

Lymphatic system

Lymphatic ducts

  • Right lymphatic duct
  • Thoracic (left lymphatic) duct

Lymph node groups

  • Cervical
  • Supraclavicular
  • Occipital
  • Pre-auricular
  • Infraclavicular
  • Axillary
  • Pectoral
  • Epitrochlear/brachial
  • Mediastinal
  • Mesenteric
  • Para-aortal
  • Iliac
  • Inguinal
  • Femoral
  • Popliteal