CCA:Atlases:Florins 2010 Hierarchy

Body

Head

Soft tissue of the head

• Skin of head
• Muscles of head
  • Masticatory muscles
    • temporal muscle
    • masseter muscle
    • lateral pterygoid muscle
    • medial pterygoid muscle
  • Facial muscles
    • frontal muscle
    • corrugator muscle
    • orbicularis occulis muscle
    • levator angulis oris muscle
    • orbicularis oris muscle
    • risorius muscle
    • nasalis muscle
    • mentalis muscle
    • depressor labii inferioris muscle
    • depressor angulis oris muscle
    • buccinator muscle
    • occipitalis muscle
• Salivary glands
  • parotid glands
  • sublingual glands
  • submandibular glands
• Tongue
• Soft palate
• Tonsils
• External ear
• Middle ear
• Internal ear
• Eyes
• Extraocular muscles

Skull

• frontal bone
• parietal bone
• temporal bone
• sphenoid bone
• ethmoid bone
• occipital bone
• maxilla
• zygomatic bone
• lacrimal bone
• vomer bone
• palatine bone
• mandible

Central nervous system

Meninges

• Dura mater
• Arachnoid
• Pia mater

Brain

• CSF spaces
  • ventricles
    • right lateral ventricle
    • left lateral ventricle
    • third ventricle
    • cerebral aqueduct
    • fourth ventricle
  • subarachnoid space (including cysterns)

• brain parenchyma
  • gray matter of brain
    • telencephalon
      • cerebral cortex
        • frontal lobe
          • superior frontal gyrus
          • middle frontal gyrus
          • inferior frontal gyrus
          • orbital gyri
          • straight gyrus
          • precentral gyrus
          • paracentral lobule
          • frontal pole
        • temporal lobe
          • superior temporal gyrus
          • middle temporal gyrus
          • inferior temporal gyrus
          • hippocampus
          • parahippocampal gyrus
          • medial occipitotemporal gyrus (temporal part)
          • lateral occipitotemporal gyrus (temporal part)
          • uncus
          • temporal pole
        • parietal lobe
          • postcentral gyrus
          • superior parietal lobule
          • inferior parietal lobule
          • precuneus
        • occipital lobe
          • superior occipital gyri
          • inferior occipital gyri
          • gyrus descendens
          • lingual gyrus
          • medial occipitotemporal gyrus (occipital part)
          • lateral occipitotemporal gyrus (occipital part)
          • cuneus
          • occipital pole
        • insular lobe
          • gyrus ambiens (limen insulae)
          • long insular gyrus
          • short insular gyri
        • limbic lobe
          • cingulate gyrus
          • paraterminal gyrus
          • indusium griseum
          • olfactory bulb
          • olfactory tract
      • subcortical gray matter of telencephalon
        • striatum
          • nucleus accumbens
          • caudate nucleus
          • putamen
        • pallidum
          • globus pallidus pars externa
          • globus pallidus pars interna
        • septal nuclei
        • amygdaloid complex
        • claustrum
    • diencephalon
      • thalamus
        • thalamic nuclei
      • subthalamus
        • subthalamic nucleus
      • hypothalamus
        • hypothalamic nuclei
        • mamillary bodies
        • substantia perforata
          • anterior substantia perforata
          • posterior substantia perforata
        • pituitary infundibulum
      • epithalamus
        • habenula
          • habenular nuclei
        • pineal body
      • gray matter of mesencephalon
        • red nucleus
        • substantia nigra
          • substantia nigra pars compacta
          • substantia nigra pars reticularis
        • superior colliculus
        • inferior colliculus
        • occulomotor nerve nucleus (CN III)
        • trochlear nerve nucleus (CN IV)
        • mesencephalic nucleus of the trigeminal nerve (CN V)
        • periaqueductal gray matter
      • gray matter of metencephalon
        • gray matter of pons
          • principal sensory nucleus of trigeminal nerve (CN V)
          • motor nucleus of the trigeminal nerve (CN V)
          • abducent nerve nucleus
          • facial nerve nucleus
        • cerebellar gray matter
          • cerebellar cortex
          • subcortical cerebellar gray matter
            • dentate nucleus
            • emboliform nucleus
            • globose nucleus
            • fastigial nucleus
        • gray matter of myelencephalon (medulla oblongata)
          • spinal nucleus of the trigeminal nerve (CN V)
          • cochlear nuclei (CN VIII)
          • vestibular nuclei (CN VIII)
          • superior salivatory nucleus
          • inferior salivatory nucleus
          • nucleus ambiguus
          • posterior (dorsal nucleus) of the vagus nerve (CN X)
          • solitary tract nucleus
          • hipoglossal nerve nucleus
  • cerebral white matter
    • association white matter tracts
      • U-fibers
      • superior longitudinal fasciculus
      • inferior longitudinal fasciculus
      • arcuate fasciculus
      • uncinate fasciculus
      • cingulum
    • projection fibers
      • corticospinal tract
      • corticomesencephalic tract
      • corticopontine tract
      • corticobulbar tract
      • optic radiation
      • thalamo-cortical projection fibers
      • medial lemniscus
      • lateral lemniscus
      • superior cerebellar peduncles
      • middle cerebellar peduncles
      • inferior cerebellar peduncles
      • optic nerves, optic chiasm, optic tracts
      • fornix
      • mamilo-thalamic tract
      • mamilo-mesencephalic tract
      • thalamic fasciculus
        • ansa lenticularis
        • lenticular fasciculus
    • commissural fibers
      • corpus callosum
      • anterior commissure
      • posterior commissure
  • cerebellar white matter

Spinal cord

• Gray matter of spinal cord
  • anterior horn
  • posterior horn
  • intermediate horn
• White matter of spinal cord
  • Anterior column
  • Lateral column
  • Posterior column

Endocrine system of brain

• Pituitary gland
  • Adenohypophysis
  • Neurohypophysis

Neck

Soft tissue of neck

Skeleton of neck

• Hyoid bone
• Cervical spinal column
  • Cervical vertebrae
    • cervical vertebra C1
    • cervical vertebra C2
    • cervical vertebra C3
    • cervical vertebra C4
    • cervical vertebra C5
    • cervical vertebra C6
    • cervical vertebra C7

Thorax

Soft tissue of thorax

Contents of thoracic cavity

Bronchi

• Right main bronchus
• Left main bronchus

Right lung

• Superior lobe of right lung
• Middle lobe of right lung
• Inferior lobe of right lung

Left lung

• Superior lobe of left lung
• Inferior lobe of left lung

Pleura

• Parietal pleura
• Visceral pleura
• Pleural cavity

Heart

• Right atrium
• Left atrium
• Atrial septum
• Ventricular septum
• Right ventricle
  • Papillary muscles of right ventricle
  • Chordae tendineae
• Left ventricle
  • Papillary muscles of left ventricle
  • Chordae tendineae
• Mitral valve
• Tricuspid valve
• Aortic valve
• Pulmonary valve

Pericardium

• Pericardial cavity

Skeleton of thorax

• Thoracic vertebral column
  • Thoracic vertebrae
    • thoracic vertebra T1
    • thoracic vertebra T2
    • thoracic vertebra T3
    • thoracic vertebra T4
    • thoracic vertebra T5
    • thoracic vertebra T6
    • thoracic vertebra T7
    • thoracic vertebra T8
    • thoracic vertebra T9
    • thoracic vertebra T10
    • thoracic vertebra T11
    • thoracic vertebra T12
• Ribs
  • Rib I
  • Rib II
  • Rib III
  • Rib IV
  • Rib V
  • Rib VI
  • Rib VII
  • Rib VIII
  • Rib IX
  • Rib X
  • Rib XI
  • Rib XII
• Sternum
  • Manubrium
  • Body of sternum
  • Xyphoid process
• Clavicles

Abdomen

Soft tissue of abdomen

Contents of abdominal cavity

• Peritoneum
  • Parietal peritoneum
  • Visceral peritoneum
  • Omentum
  • Peritoneal cavity
    • Bursa omentalis
    • Douglas' recess
  • Falciform ligament of liver
  • Mesentery
  • Mesocolon
    • Transverse mesocolon
    • Sigmoid mesocolon
  • Broad ligament of uterus
    • Mesometrium
    • Mesosalpinx
    • Mesovarium
• Retroperitoneal space
• Stomach
  • Cardia
  • Fundus of stomach
  • Body of stomach
  • Pylorus
• Duodenum
  • Ampulla of Vater
• Small bowel
  • Jejunum
  • Ileum
• Colon
  • Cecum
    • Ileocecal valve
    • Appendix
  • Ascending colon
  • Transverse colon
  • Sigmoid colon
  • Rectum
  • Anus
• Liver
  • Capsule of liver
  • Right lobe of liver
  • Left lobe of liver
  • Caudate lobe of liver
  • Quadrate lobe of liver
  • Ligamentum teres
• Biliary tree
  • Right hepatic duct
  • Left hepatic duct
  • Common hepatic duct
  • Common bile duct
  • Cystic duct
  • Gallblader
• Pancreas
  • Head of pancreas
  • Body of pancreas
  • Tail of pancreas
  • Pancreatic duct
  • Islets of Langerhans
• Spleen
• Right kidney
  • Parenchyma of right kidney
    • Cortex of right kidney
    • Medulla of right kidney
• Right renal pelvis
• Left kidney
  • Parenchyma of left kidney
    • Cortex of left kidney
    • Medulla of left kidney
• Left renal pelvis
• Right ureter
• Left ureter
• Urinary bladder
• Uretra
• Suprarenal glands
  • Corticosuprarenal glands
  • Medullosuprarenal glands
• Female internal genitalia
  • Uterus
    • Fundus of uterus
    • Body of uterus
    • Cervix
    • Round ligaments
    • Uterosacral ligaments
    • Pubocervical ligament
  • Fallopian tubes
  • Ovaries
  • Vagina
• Male internal genitalia
  • Prostate
  • Seminal vesicles
  • Deferent ducts

Skeleton of Abdomen

Lumbar spine

• Lumbar vertebrae
  • lumbar vertebra L1
  • lumbar vertebra L2
  • lumbar vertebra L3
  • lumbar vertebra L4
  • lumbar vertebra L5

Female external genitalia

Vulva

• Vestibule
• Hymen
• Major labia
• Minor labia
• Praeputium
• Clitoris
  • Glans
  • Clitoral crura
    • Cavernous bodies
• Bartolin's glands

Male external genitalia

Penis

• Glans
  • Meatus
• Shaft
  • Cavernous bodies
  • Spongious body
• Preputium

Scrotum

• Skin of scrotum
• Dartos layer
• Cremaster muscle
• Testicles
  • Epididimis
  • Spermatic cord

Upper extremity

Arm and shoulder

Soft tissue of arm and shoulder

• Skin of arm and shoulder
• Muscles and tendons of arm and shoulder

Skeleton of arm and shoulder

• Scapula
• Humerus

Forearm

Soft tissue of forearm

• Skin of forearm
• Muscles and tendons of forearm

Skeleton of forearm

• Radius
• Ulna

Hand

Soft tissue of hand

• Skin of hand
• Muscles and tendons of hand

Skeleton of hand

• Carpus
  • Scaphoid
  • Lunate
  • Triquetrum
  • Pisiform
  • Trapezium
  • Trapezoid
  • Capitate
  • Hamate
• Metacarpus
  • Metacarpals
    • metacarpal I
    • metacarpal II
    • metacarpal III
    • metacarpal IV
    • metacarpal V
• Phalanges of hand

Lower extremity

Hip and Thigh

Soft tissue of hip and thigh

• Skin of hip and thigh
• Muscles and tendons of hip and thigh

Skeleton of hip and thigh

• Femur

Leg

Soft tissue of leg

• Skin of leg
• Muscles and tendons of leg

Skeleton of leg

• Tibia
• Peroneus

Foot

Soft tissue of foot

• Skin of foot
• Muscles and tendons of foot

Skeleton of foot

• Tarsus
  • Talus
  • Calcaneus
  • Navicular
  • First Cuneiform
  • Second Cuneiform
  • Third Cuneiform
  • Cuboid
• Metatarsus
  • Metatarsals
    • metatarsal I
    • metatarsal II
    • metatarsal III
    • metatarsal IV
    • metatarsal V

• Phalanges of foot

Peripheral nervous system

Cranial nerves

• Olfactory nerve (CN I)
• Optic nerve (CN II)
• Oculomotor nerve (CN III)
• Trochlear nerve (CN IV)
• Trigeminal nerve (CN V)
• Abducent nerve (CN VI)
• Facial nerve (CN VII)
• Intermediate nerve (CN VII b)
• Vestibulo-cochlear nerve (CN VIII)
• Glossopharyngeal nerve (CN IX)
• Vagal nerve (CN X)
• Accessory nerve (CN XI)
• Hypoglossal nerve (CN XII)

Spinal nerves

Nervous plexi and intercostal nerves

• Cervical plexus
  • Lesser occipital nerve
  • Great auricular nerve
  • Transverse cervical nerve
  • Supraclavicular nerve
  • Ansa cervicalis
  • Phrenic nerve
  • Segmental nerve branches
    • segmental nerve branch C1
    • segmental nerve branch C2
    • segmental nerve branch C3
    • segmental nerve branch C4
• Brachial plexus
  • Dorsal scapular nerve
  • Suprascapular nerve
  • Nerve to subclavius
  • Lateral pectoral nerve
  • Musculocutaneus nerve
  • Axillary nerve
  • Median nerve
  • Ulnar nerve
  • Radial nerve
  • Medial cutaneous nerve of the arm
  • Medial cutaneous nerve of the forearm
  • Lower subscapular nerve
  • Thoracodorsal nerve
  • Medial pectoral nerve
  • Upper subscapular nerve
  • Long thoracic nerve
• Intercostal nerves
  • Intercostal nerve I
  • Intercostal nerve II
  • Intercostal nerve III
  • Intercostal nerve IV
  • Intercostal nerve V
  • Intercostal nerve VI
  • Intercostal nerve VII
  • Intercostal nerve VIII
  • Intercostal nerve IX
  • Intercostal nerve X
  • Intercostal nerve XI
• Lumbosacral plexus
  • Iliohypogastric nerve
  • Ilioinguinal nerve
  • Genitofemoral nerve
  • Lateral cutaneous femoral nerve
  • Femoral nerve
  • Obturator nerve
  • Accessory obturator nerve
  • Sciatic nerve
    • Common fibular nerve
    • Tibial nerve
  • Perforating cutaneous nerve
  • Pudendal nerve
  • Anococcigeal nerves

Circulatory system

Systemic arterial system

• Aorta
  • Right coronary artery
  • Left coronary artery
  • Aortic arch
    • Right brachiocephalic trunc
      • Right subclavian artery
        • Right vertebral artery
          • Anterior spinal artery
          • Posterior inferior cerebellar artery
          • Basilar artery
            • Anterior inferior cerebellar artery
            • Pontine arteries
            • Superior cerebellar artery
            • Posterior cerebellar artery
        • Internal thoracic artery
        • Thyrocervical trunk
        • Costocervical trunk
        • Dorsal scapular artery
        • Axillary artery
          • Brachial artery
      • Right common carotid artery
        • Right external carotid artery
        • Right internal carotid artery
          • Right opthalmic artery
          • Right anterior cerebral artery
            • Anterior communicating artery
        • Right middle cerebral artery
        • Right posterior communicating artery
    • Left common carotid artery
      • Left external carotid artery
      • Left internal carotid artery
        • see right internal carotid artery
    • Left subclavian artery
      • see right subclavian artery
  • Descending thoracic aorta
    • Bronchial arteries
    • Esophageal arteries
    • Posterior intercostal arteries
  • Abdominal aorta
    • Inferior phrenic artery
    • Celiac trunk
    • Superior mesenteric artery
    • Middle suprarenal artery
    • Renal artery
    • Gonadal (ovarian/testicular) artery
    • Lumbar arteries
    • Inferior mesenteric artery
    • Median sacral artery
    • Right common iliac artery
      • Right external iliac artery
        • Inferior epigastric artery
        • Deep circumflex iliac artery
        • Femoral artery
      • Right internal iliac artery
        • Right iliolumbar artery
        • Right lateral sacral arteries
        • Right superior gluteal artery
        • Right obturator artery
        • Right inferior gluteal artery
        • Right umbilical artery
        • Right uterine/deferential artery
        • Right inferior vesical artery
        • Right middle rectal artery
        • Right internal pudendal artery
    • Left common iliac artery
      • Left external iliac artery
      • Left internal iliac artery

Systemic venous system

• Superior vena cava
• Inferior vena cava
• Azygos vein
• Hemyazygos vein
• Portal vein

Pulmonary arterial system

• Right pulmonary artery
• Left pulmonary artery

Pulmonary venous system

• Right superior pulmonary vein
• Right inferior pulmonary vein
• Left superior pulmonary vein
• Left inferior pulmonary vein

Lymphatic system

Lymphatic ducts

• Right lymphatic duct
• Thoracic duct

Lymph node groups

• Cervical lymph nodes
• Supraclavicular lymph nodes
• Occipital lymph nodes
• Pre-auricular lymph nodes
• Infraclavicular lymph nodes
• Axillary lymph nodes
• Pectoral lymph nodes
• Epitrochlear/brachial lymph nodes
• Mediastinal lymph nodes
• Mesenteric lymph nodes
• Para-aortal lymph nodes
• Iliac lymph nodes
• Inguinal lymph nodes
• Femoral lymph nodes
• Popliteal

Material

• air
• liquid

Biological material

• blood
• cerebro-spinal fluid (CSF)

Tissue

• gray matter
• white matter
• bone
• cartilage
• fat
• connective tissue

Pathology

• Tumor
• Edema
• Bleeding
• Necrosis
• Clot

Segmentation regions

• unsegmented region
• background
• annotation
  • annotation 1
  • annotation 2
  • annotation 3
  • annotation 4
  • annotation 5
  • annotation 6
  • annotation 7
  • annotation 8
  • annotation 9
  • annotation 10
  • annotation 11
  • annotation 12
  • annotation 13
  • annotation 14
  • annotation 15
  • annotation 16
• user defined region
  • region 1
  • region 2
  • region 3
  • region 4
  • region 5
  • region 6
  • region 7
  • region 8
  • region 9
  • region 10
  • region 12
  • region 13
  • region 14
  • region 15
  • region 16