Documentation/4.1/SlicerApplication/LookupTables/TractographyColors
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Template:Documentation/4.1/TractographyColors
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WARNING: This LUT is Work in Progress, which means:
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- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- If changing the order of the table, the indices can be recreated with this tcl script.
This is the look-up table for the parcellation of the white matter of the brain.
- Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab
Lookup table
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgba(0,0,0,0) | |
| 1 | CC | rgb(255, 215, 0) | corpus callosum |
| 2 | CC genu | rgb(225, 215, 0) | genu of the corpus callosum |
| 3 | CC body | rgb(195, 215, 0) | body of the corpus callosum |
| 4 | CC splenium | rgb(165, 215, 0) | splenium of the corpus callosum |
| 5 | DHC | rgb(122, 120, 170) | dorsal hippocampal comissure |
| 6 | AnC | rgb(92, 140, 170) | anterior comissure |
| 7 | PC | rgb(62, 160, 170) | posterior comissure |
| 8 | FC | rgb( 32, 180, 170) | forniceal comissure |
| 9 | PT | rgb(68,131,98) | pontine tract |
| 10 | U | rgb(83,146,164) | short cortico-cortical pathway |
| 11 | r AC | rgb(221,130,101) | right arcuate fasciculus |
| 12 | l AC | rgb(216,101,79) | left arcuate fasciculus |
| 13 | r IOFF | rgb(144,238,144) | right inferior occipito-frontal fasciculus |
| 14 | l IOFF | rgb( 60, 179, 113) | left inferior occipito-frontal fasciculus |
| 15 | r ILF | rgb(220,245,20) | right inferior longitudinal fasciculus |
| 16 | l ILF | rgb(128, 128, 0) | left inferior longitudinal fasciculus |
| 17 | r UNC | rgb(255,250,220) | right uncinate fasciculus |
| 18 | l UNC | rgb(230,220,70) | left uncinate fasciculus |
| 19 | r CST | rgb(230, 230, 250) | right cortico-spinal tract |
| 20 | l CST | rgb(200,200,235) | left cortico-spinal tract |
| 21 | r OR | rgb(135, 206, 235) | right optic radiation |
| 22 | l OR | rgb(0,151,206) | left optic radiation |
| 23 | r CB | rgb(255, 99, 71) | right cingulate bundle |
| 24 | l CB | rgb(178, 34, 34) | left cingulate bundle |
| 25 | r SLF 1 | rgb(183,214,211) | right superior longitudinal fasciculus 1 |
| 26 | l SLF 1 | rgb(152,189,207) | left superior longitudinal fasciculus 1 |
| 27 | r SLF 2 | rgb(178,212,242) | right superior longitudinal fasciculus 2 |
| 28 | l SLF 2 | rgb(111,184,210) | left superior longitudinal fasciculus 2 |
| 29 | r SLF 3 | rgb(111,197,131) | right superior longitudinal fasciculus 3 |
| 30 | l SLF 3 | rgb(68,172,100) | left superior longitudinal fasciculus 3 |
| 31 | r MDLF | rgb(85,188,255) | right middle longitudinal fasciculus |
| 32 | l MDLF | rgb( 65, 105, 225) | left middle longitudinal fasciculus |
| 33 | r EC | rgb(160, 82, 45) | right extreme capsule |
| 34 | l EC | rgb(78,63,0) | left extreme capsule |
| 35 | r SOFF | rgb(216,191,216) | right superior occipito-frontal fasciculus |
| 36 | l SOFF | rgb(106, 90, 205) | left superior occipito-frontal fasciculus |
| 37 | l CT | rgb(150,98,83) | left cortico-thalamical pathways |
| 38 | r CT | rgb(145,60,66) | right cortico-thalamical pathways |
| 39 | l CS | rgb(244, 164, 96) | left cortico-striatal pathways |
| 40 | r CS | rgb(177,122,101) | right cortico-striatal pathways |
| 41 | l CP | rgb(250,250,225) | left cortico-pontine projections |
| 42 | r CP | rgb(200,200,200) | right cortico-pontine projections |
| 43 | PF | rgb(83,146,164) | peritumoral fibers |
| 44 | P1 | rgb(252,115,105) | probe 1 |
| 45 | P2 | rgb(222,115,105) | probe 2 |
| 46 | P3 | rgb(192,115,105) | probe 3 |
| 47 | P4 | rgb(162,115,105) | probe 4 |
| 48 | right occipital lobe | rgb(182,166,110) | |
| 49 | left occipital lobe | rgb(182,166,110) | |
| 50 | right insular lobe | rgb(188,135,166) | |
| 51 | left insular lobe | rgb(188,135,166) | |
| 52 | right limbic lobe | rgb(154,150,201) | |
| 53 | left limbic lobe | rgb(154,150,201) | |
| 54 | right striatum | rgb(177,140,190) | |
| 55 | left striatum | rgb(177,140,190) | |
| 56 | right caudate nucleus | rgb(30,111,85) | |
| 57 | left caudate nucleus | rgb(30,111,85) | |
| 58 | right putamen | rgb(210,157,166) | |
| 59 | left putamen | rgb(210,157,166) | |
| 60 | right pullidum | rgb(48,129,126) | |
| 61 | left pallidum | rgb(48,129,126) | |
| 62 | right amygdaloid complex | rgb(98,153,112) | |
| 63 | left amygdaloid complex | rgb(98,153,112) | |
| 64 | diencephalon | rgb(69,110,53) | |
| 65 | thalamus | rgb(166,113,137) | |
| 66 | right thalamus | rgb(122,101,38) | |
| 67 | left thalamus | rgb(122,101,38) | |
| 68 | pineal gland | rgb(253,135,192) | |
| 69 | midbrain | rgb(145,92,109) | |
| 70 | substantia nigra | rgb(46,101,131) | |
| 71 | right substantia nigra | rgb(0,108,112) | |
| 72 | left substantia nigra | rgb(0,108,112) | |
| 73 | cerebral white matter | rgb(250,250,225) | |
| 74 | right superior longitudinal fasciculus | rgb(127,150,88) | |
| 75 | left superior longitudinal fasciculus | rgb(127,150,88) | |
| 76 | right inferior longitudinal fasciculus | rgb(159,116,163) | |
| 77 | left inferior longitudinal fasciculus | rgb(159,116,163) | |
| 78 | right arcuate fasciculus | rgb(125,102,154) | |
| 79 | left arcuate fasciculus | rgb(125,102,154) | |
| 80 | right uncinate fasciculus | rgb(106,174,155) | |
| 81 | left uncinate fasciculus | rgb(106,174,155) | |
| 82 | right cingulum bundle | rgb(154,146,83) | |
| 83 | left cingulum bundle | rgb(154,146,83) | |
| 84 | projection fibers | rgb(126,126,55) | |
| 85 | right corticospinal tract | rgb(201,160,133) | |
| 86 | left corticospinal tract | rgb(201,160,133) | |
| 87 | right optic radiation | rgb(78,152,141) | |
| 88 | left optic radiation | rgb(78,152,141) | |
| 89 | right medial lemniscus | rgb(174,140,103) | |
| 90 | left medial lemniscus | rgb(174,140,103) | |
| 91 | right superior cerebellar peduncle | rgb(139,126,177) | |
| 92 | left superior cerebellar peduncle | rgb(139,126,177) | |
| 93 | right middle cerebellar peduncle | rgb(148,120,72) | |
| 94 | left middle cerebellar peduncle | rgb(148,120,72) | |
| 95 | right inferior cerebellar peduncle | rgb(186,135,135) | |
| 96 | left inferior cerebellar peduncle | rgb(186,135,135) | |
| 97 | optic chiasm | rgb(99,106,24) | |
| 98 | right optic tract | rgb(156,171,108) | |
| 99 | left optic tract | rgb(156,171,108) | |
| 100 | right fornix | rgb(64,123,147) | |
| 101 | left fornix | rgb(64,123,147) | |
| 102 | commissural fibers | rgb(138,95,74) | |
| 103 | corpus callosum | rgb(97,113,158) | |
| 104 | posterior commissure | rgb(126,161,197) | |
| 105 | cerebellar white matter | rgb(194,195,164) | |
| 106 | CSF space | rgb(85,188,255) | |
| 107 | ventricles of brain | rgb(88,106,215) | |
| 108 | right lateral ventricle | rgb(88,106,215) | |
| 109 | left lateral ventricle | rgb(88,106,215) | |
| 110 | right third ventricle | rgb(88,106,215) | |
| 111 | left third ventricle | rgb(88,106,215) | |
| 112 | cerebral aqueduct | rgb(88,106,215) | |
| 113 | fourth ventricle | rgb(88,106,215) | |
| 114 | subarachnoid space | rgb(88,106,215) | |
| 115 | spinal cord | rgb(244,214,49) | |
| 116 | gray matter of spinal cord | rgb(200,200,215) | |
| 117 | white matter of spinal cord | rgb(250,250,225) | |
| 118 | endocrine system of brain | rgb(82,174,128) | |
| 119 | pituitary gland | rgb(57,157,110) | |
| 120 | adenohypophysis | rgb(60,143,83) | |
| 121 | neurohypophysis | rgb(92,162,109) | |
| 122 | meninges | rgb(255,244,209) | |
| 123 | dura mater | rgb(255,244,209) | |
| 124 | arachnoid | rgb(255,244,209) | |
| 125 | pia mater | rgb(255,244,209) | |
| 126 | muscles of head | rgb(201,121,77) | |
| 127 | salivary glands | rgb(70,163,117) | |
| 128 | lips | rgb(188,91,95) | |
| 129 | nose | rgb(177,122,101) | |
| 130 | tongue | rgb(166,84,94) | |
| 131 | soft palate | rgb(182,105,107) | |
| 132 | right inner ear | rgb(229,147,118) | |
| 133 | left inner ear | rgb(229,147,118) | |
| 134 | right external ear | rgb(174,122,90) | |
| 135 | left external ear | rgb(174,122,90) | |
| 136 | right middle ear | rgb(201,112,73) | |
| 137 | left middle ear | rgb(201,112,73) | |
| 138 | right eyeball | rgb(194,142,0) | |
| 139 | left eyeball | rgb(194,142,0) | |
| 140 | skull | rgb(241,213,144) | |
| 141 | right frontal bone | rgb(203,179,77) | |
| 142 | left frontal bone | rgb(203,179,77) | |
| 143 | right parietal bone | rgb(229,204,109) | |
| 144 | left parietal bone | rgb(229,204,109) | |
| 145 | right temporal bone | rgb(255,243,152) | |
| 146 | left temporal bone | rgb(255,243,152) | |
| 147 | right sphenoid bone | rgb(209,185,85) | |
| 148 | left sphenoid bone | rgb(209,185,85) | |
| 149 | right ethmoid bone | rgb(248,223,131) | |
| 150 | left ethmoid bone | rgb(248,223,131) | |
| 151 | occipital bone | rgb(255,230,138) | |
| 152 | maxilla | rgb(196,172,68) | |
| 153 | right zygomatic bone | rgb(255,255,167) | |
| 154 | right lacrimal bone | rgb(255,250,160) | |
| 155 | vomer bone | rgb(255,237,145) | |
| 156 | right palatine bone | rgb(242,217,123) | |
| 157 | left palatine bone | rgb(242,217,123) | |
| 158 | mandible | rgb(222,198,101) | |
| 159 | neck | rgb(177,122,101) | |
| 160 | muscles of neck | rgb(213,124,109) | |
| 161 | pharynx | rgb(184,105,108) | |
| 162 | larynx | rgb(150,208,243) | |
| 163 | thyroid gland | rgb(62,162,114) | |
| 164 | right parathyroid glands | rgb(62,162,114) | |
| 165 | left parathyroid glands | rgb(62,162,114) | |
| 166 | skeleton of neck | rgb(242,206,142) | |
| 167 | hyoid bone | rgb(250,210,139) | |
| 168 | cervical vertebral column | rgb(255,255,207) | |
| 169 | thorax | rgb(177,122,101) | |
| 170 | trachea | rgb(182,228,255) | |
| 171 | bronchi | rgb(175,216,244) | |
| 172 | right lung | rgb(197,165,145) | |
| 173 | left lung | rgb(197,165,145) | |
| 174 | superior lobe of right lung | rgb(172,138,115) | |
| 175 | superior lobe of left lung | rgb(172,138,115) | |
| 176 | middle lobe of right lung | rgb(202,164,140) | |
| 177 | inferior lobe of right lung | rgb(224,186,162) | |
| 178 | inferior lobe of left lung | rgb(224,186,162) | |
| 179 | pleura | rgb(255,245,217) | |
| 180 | heart | rgb(206,110,84) | |
| 181 | right atrium | rgb(210,115,89) | |
| 182 | left atrium | rgb(203,108,81) | |
| 183 | atrial septum | rgb(233,138,112) | |
| 184 | ventricular septum | rgb(195,100,73) | |
| 185 | right ventricle of heart | rgb(181,85,57) | |
| 186 | left ventricle of heart | rgb(152,55,13) | |
| 187 | mitral valve | rgb(159,63,27) | |
| 188 | tricuspid valve | rgb(166,70,38) | |
| 189 | aortic valve | rgb(218,123,97) | |
| 190 | pulmonary valve | rgb(225,130,104) | |
| 191 | aorta | rgb(224,97,76) | |
| 192 | pericardium | rgb(255,244,209) | |
| 193 | pericardial cavity | rgb(184,122,154) | |
| 194 | esophagus | rgb(211,171,143) | |
| 195 | thymus | rgb(47,150,103) | |
| 196 | mediastinum | rgb(255,244,209) | |
| 197 | skin of thoracic wall | rgb(173,121,88) | |
| 198 | muscles of thoracic wall | rgb(188,95,76) | |
| 199 | skeleton of thorax | rgb(255,239,172) | |
| 200 | thoracic vertebral column | rgb(226,202,134) | |
| 201 | ribs | rgb(253,232,158) | |
| 202 | sternum | rgb(244,217,154) | |
| 203 | right clavicle | rgb(205,179,108) | |
| 204 | left clavicle | rgb(205,179,108) | |
| 205 | abdominal cavity | rgb(186,124,161) | |
| 206 | abdomen | rgb(177,122,101) | |
| 207 | peritoneum | rgb(255,255,220) | |
| 208 | omentum | rgb(234,234,194) | |
| 209 | peritoneal cavity | rgb(204,142,178) | |
| 210 | retroperitoneal space | rgb(180,119,153) | |
| 211 | stomach | rgb(216,132,105) | |
| 212 | duodenum | rgb(255,253,229) | |
| 213 | small bowel | rgb(205,167,142) | |
| 214 | colon | rgb(204,168,143) | |
| 215 | anus | rgb(255,224,199) | |
| 216 | liver | rgb(221,130,101) | |
| 217 | biliary tree | rgb(0,145,30) | |
| 218 | gallbladder | rgb(139,150,98) | |
| 219 | pancreas | rgb(249,180,111) | |
| 220 | spleen | rgb(157,108,162) | |
| 221 | urinary system | rgb(203,136,116) | |
| 222 | right kidney | rgb(185,102,83) | |
| 223 | left kidney | rgb(185,102,83) | |
| 224 | right ureter | rgb(247,182,164) | |
| 225 | left ureter | rgb(247,182,164) | |
| 226 | urinary bladder | rgb(222,154,132) | |
| 227 | urethra | rgb(124,186,223) | |
| 228 | right adrenal gland | rgb(249,186,150) | |
| 229 | left adrenal gland | rgb(249,186,150) | |
| 230 | female internal genitalia | rgb(244,170,147) | |
| 231 | uterus | rgb(255,181,158) | |
| 232 | right fallopian tube | rgb(255,190,165) | |
| 233 | left fallopian tube | rgb(227,153,130) | |
| 234 | right ovary | rgb(213,141,113) | |
| 235 | left ovary | rgb(213,141,113) | |
| 236 | vagina | rgb(193,123,103) | |
| 237 | male internal genitalia | rgb(216,146,127) | |
| 238 | prostate | rgb(230,158,140) | |
| 239 | right seminal vesicle | rgb(245,172,147) | |
| 240 | left seminal vesicle | rgb(245,172,147) | |
| 241 | right deferent duct | rgb(241,172,151) | |
| 242 | left deferent duct | rgb(241,172,151) | |
| 243 | skin of abdominal wall | rgb(177,124,92) | |
| 244 | muscles of abdominal wall | rgb(171,85,68) | |
| 245 | skeleton of abdomen | rgb(217,198,131) | |
| 246 | lumbar vertebral column | rgb(212,188,102) | |
| 247 | female external genitalia | rgb(185,135,134) | |
| 248 | male external genitalia | rgb(185,135,134) | |
| 249 | skeleton of upper limb | rgb(198,175,125) | |
| 250 | muscles of upper limb | rgb(194,98,79) | |
| 251 | right upper limb | rgb(177,122,101) | |
| 252 | left upper limb | rgb(177,122,101) | |
| 253 | right shoulder | rgb(177,122,101) | |
| 254 | left shoulder | rgb(177,122,101) | |
| 255 | right arm | rgb(177,122,101) | |
| 256 | left arm | rgb(177,122,101) | |
| 257 | right elbow | rgb(177,122,101) | |
| 258 | left elbow | rgb(177,122,101) | |
| 259 | right forearm | rgb(177,122,101) | |
| 260 | left forearm | rgb(177,122,101) | |
| 261 | right wrist | rgb(177,122,101) | |
| 262 | left wrist | rgb(177,122,101) | |
| 263 | right hand | rgb(177,122,101) | |
| 264 | left hand | rgb(177,122,101) | |
| 265 | skeleton of lower limb | rgb(255,238,170) | |
| 266 | muscles of lower limb | rgb(206,111,93) | |
| 267 | right lower limb | rgb(177,122,101) | |
| 268 | left lower limb | rgb(177,122,101) | |
| 269 | right hip | rgb(177,122,101) | |
| 270 | left hip | rgb(177,122,101) | |
| 271 | right thigh | rgb(177,122,101) | |
| 272 | left thigh | rgb(177,122,101) | |
| 273 | right knee | rgb(177,122,101) | |
| 274 | left knee | rgb(177,122,101) | |
| 275 | right leg | rgb(177,122,101) | |
| 276 | left leg | rgb(177,122,101) | |
| 277 | right foot | rgb(177,122,101) | |
| 278 | left foot | rgb(177,122,101) | |
| 279 | peripheral nervous system | rgb(216,186,0) | |
| 280 | autonomic nerve | rgb(255,226,77) | |
| 281 | sympathetic trunk | rgb(255,243,106) | |
| 282 | cranial nerves | rgb(255,234,92) | |
| 283 | vagus nerve | rgb(240,210,35) | |
| 284 | peripheral nerve | rgb(224,194,0) | |
| 285 | circulatory system | rgb(213,99,79) | |
| 286 | systemic arterial system | rgb(217,102,81) | |
| 287 | systemic venous system | rgb(0,147,202) | |
| 288 | pulmonary arterial system | rgb(0,122,171) | |
| 289 | pulmonary venous system | rgb(186,77,64) | |
| 290 | lymphatic system | rgb(111,197,131) | |
| 291 | needle | rgb(240,255,30) | |
| 292 | region 0 | rgb(185,232,61) | |
| 293 | region 1 | rgb(0,226,255) | |
| 294 | region 2 | rgb(251,159,255) | |
| 295 | region 3 | rgb(230,169,29) | |
| 296 | region 4 | rgb(0,194,113) | |
| 297 | region 5 | rgb(104,160,249) | |
| 298 | region 6 | rgb(221,108,158) | |
| 299 | region 7 | rgb(137,142,0) | |
| 300 | region 8 | rgb(230,70,0) | |
| 301 | region 9 | rgb(0,147,0) | |
| 302 | region 10 | rgb(0,147,248) | |
| 303 | region 11 | rgb(231,0,206) | |
| 304 | region 12 | rgb(129,78,0) | |
| 305 | region 13 | rgb(0,116,0) | |
| 306 | region 14 | rgb(0,0,255) | |
| 307 | region 15 | rgb(157,0,0) | |
| 308 | unknown | rgb(100,100,130) | |
| 309 | cyst | rgb(205,205,100) |
