Slicer-3.6-QA

Return to Slicer 3.6 documentation

• This page contains our assessment of the Slicer 3.6 modules

• See also the module culling event at the end of April 2010

Testing Status

Core Modules

Slicer 3.6 Quality Assurance

Score	Name	Documentation	Help	Acknowledgment	Test coverage	valgrind errors
Gold	my module	complete	yes and yes	yes, yes, yes	80%	0
??	Camera	complete	yes, no link	no	0%	unknown
??	Volumes	complete	yes and yes	yes and yes	0%	unknown
??	Diffusion Editor	complete	yes and yes	no	0%	unknown
??	Models	complete	yes and yes	yes and yes	0%	unknown
??	Measurements	complete	yes and yes	no and yes	0%	unknown
??	Fiducials	complete	yes and yes	no	0%	unknown
??	Data	complete	yes and yes	yes and yes	0%	unknown
??	Slices	complete	no	no	0%	unknown
??	Colors	complete	yes and no	yes and no	0%	unknown
??	Interactive Editor	complete			0%	unknown
??	ROI Module	complete	no and yes	no and yes	0%	unknown
??	Volume Rendering	complete	yes and yes	no and yes	0%	unknown

Application CLI Modules

Slicer 3.6 Quality Assurance

Score	Name	Documentation	Help	Acknowledgment	Test coverage	valgrind errors
Gold	my module	complete	yes and yes	yes, yes, yes	80%	0
??	DiffusionWeightedTest				69.8%	unknown
??	DiffusionTensorEstimation				79.7%	unknown
??	DiffusionTensorMathematics				56.2%	unknown
??	OrientImage				85.7%	unknown
??	LinearRegistration				66.7%	unknown
??	RigidRegistration				1.0%	unknown
??	AffineRegistration				1.4%	unknown
??	BSplineDeformableRegistration				82.3%	unknown
??	TestGridTransformRegistration				90.7%	unknown
??	CheckerBoard				67.4%	unknown
??	ResampleVolume				57.1%	unknown
??	PolyDataToLabelmap				87.9%	unknown
??	GaussianBlurImageFilter				55.9%	unknown
??	ConfidenceConnected				87.5%	unknown
??	ExecutionModelTour				87.2%	unknown
??	ImageReadDicomWrite				86.1%	unknown
??	CurvatureAnisotropicDiffusion				64.3%	unknown
??	GradientAnisotropicDiffusion				63.4%	unknown
??	MedianImageFilter				51.1%	unknown
??	DWIDicomLoad				0%	unknown
??	HistogramMatching				65.0%	unknown
??	OtsuThresholdImageFilter				100%	unknown
??	OtsuThresholdSegmentation				90.9%	unknown
??	Subtract				71.7%	unknown
??	Multiply				77.6%	unknown
??	Add				84.9%	unknown
??	Threshold				55.8%	unknown
??	Mask				80.0%	unknown
??	Cast				14.6%	unknown
??	VotingBinaryHoleFillingImageFilter				100%	unknown
??	ModelMaker				57.4%	unknown
??	MultipleModelsExample				1.9%	unknown
??	GrayscaleModelMaker				82.1%	unknown
??	MergeModels				62.7%	unknown
??	GrayscaleFillHoleImageFilter				57.1%	unknown
??	GrayscaleGrindPeakImageFilter				64.5%	unknown
??	LabelMapSmoothing				87.9%	unknown
??	ImageLabelCombine				7.5%	unknown
??	ResampleVolume2				46.8%	unknown
??	ZeroCrossingBasedEdgeDetectionImageFilter				62.5%	unknown
??	FreesurferSurfaceSectionExtraction				60.0%	unknown

Testing Partition

Most Slicer modules have a GUI component and a Data Processing component.

Testing GUI components is still a challenge, so we will focus here on testing the Data Processing components. This can be done in most cases by partitioning the module into a GUI section and a Data Processing section, where the second one usually takes the form of a C++ class (although that is not a requirement).

The data processing section can be tested by using standard CTest/CMake mechanisms. Basically by adding ADD_TEST() entries to the CMakeLists.txt file of the module.

Luis Ibanez' scoring system

The following scoring will be applied to the data processing sections of all modules:

Slicer 3.6 Quality Assurance Scoring

Score	Code Coverage	Valgrind Errors	Documentation	Tutorial
Gold	> 80%	0	yes	yes
Silver	> 70%	< 10	yes	yes
Bronze	> 60%	< 50	yes	yes
Clay	> 50%	< 100	yes	yes
Coal	> 50%	> 100	yes	yes
Hazard	unknown	unknown	no	no

The code coverage and Valgrind error must be the ones reported on the Nightly Slicer Dashboard. Anecdotal data is not acceptable.