Difference between revisions of "Slicer3:Registration"
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Image:Registration_Fiducial_icon.png|The [[Modules:FiducialRegistration |'''Fiducial Alignment''']] module (Casey Goodlett) can align images based on pairs of manually selected fiducial points (rigid and affine). | Image:Registration_Fiducial_icon.png|The [[Modules:FiducialRegistration |'''Fiducial Alignment''']] module (Casey Goodlett) can align images based on pairs of manually selected fiducial points (rigid and affine). | ||
</gallery> | </gallery> | ||
| − | == Modules | + | == Auxilary Modules == |
*Transformation matrices derived from the above modules can be used as input for resampling other volumes (including DTI) using the Resample Volume 2 module. | *Transformation matrices derived from the above modules can be used as input for resampling other volumes (including DTI) using the Resample Volume 2 module. | ||
| + | *Modules:ROIModule-Documentation-3.4 | ||
| + | *Modules:Fiducials-Documentation-3.4 | ||
| + | *Modules:Data-Documentation-3.4 | ||
| + | *Modules:Editor-Documentation-3.4 | ||
| + | *Modules:OtsuThreshold-Documentation-3.4 | ||
| + | *Modules:ResampleDTIVolume-Documentation-3.4 | ||
| + | *http://www.slicer.org/slicerWiki/index.php/Modules:CheckerboardFilter-Documentation-3.4 | ||
| + | *[[Modules:ResampleVolume-Documentation-3.4|Resample Volume]] (Bill Lorensen) | ||
| + | *[[Modules:ResampleVolume2-Documentation-3.4|Resample Volume2]] (Francois Budin) | ||
| + | *[[Modules:SubtractImages-Documentation-3.4|Subtract Images]] (Bill Lorensen) | ||
== Use cases == | == Use cases == | ||
Revision as of 20:42, 19 January 2010
Home < Slicer3:RegistrationContents
Modules for Automated Registration
The Register Images Module (Casey Goodlett, Stephen Aylward) performs automated image registration, rigid to affine, based on image intensity similarities.
The Linear Registration (Daniel Blezek) module performs automated rigid registration. This is being replaced by the Register Images Module that performs the same function.
The Deformable B-Spline Registration Module (Bill Lorensen) performs automated image warping based on image intensities.
The ACPC Transform module (Nicole Aucoin) is used to orient brain images along the anatomical reference line between the anterior and posterior commissure.
The HAMMER module (Guorong Wu, Dinggang Shen) can align brain images of different individuals based on tissue class segmentation and intensity (experimental stage).
Modules for Interactive/Manual Registration
The Transforms Module(Alex Yarmarkovich) allows to manually and interactively move one image to align with another (rigid only). This can be used for initial alignment.
The Fiducial Alignment module (Casey Goodlett) can align images based on pairs of manually selected fiducial points (rigid and affine).
Auxilary Modules
- Transformation matrices derived from the above modules can be used as input for resampling other volumes (including DTI) using the Resample Volume 2 module.
- Modules:ROIModule-Documentation-3.4
- Modules:Fiducials-Documentation-3.4
- Modules:Data-Documentation-3.4
- Modules:Editor-Documentation-3.4
- Modules:OtsuThreshold-Documentation-3.4
- Modules:ResampleDTIVolume-Documentation-3.4
- http://www.slicer.org/slicerWiki/index.php/Modules:CheckerboardFilter-Documentation-3.4
- Resample Volume (Bill Lorensen)
- Resample Volume2 (Francois Budin)
- Subtract Images (Bill Lorensen)
